Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009242

Physical Location & Seq

Genomic Coordinates Forward (+)

9841455 .. 9850902

Gene Structure 9448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG054600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGAGAAAGAAGGGAATATCTCTCAGTATGGCGTGTTTAGAGAGGGCCTCTCCAGCTTTGAAGGAAATCCTGCTCAAACTATACCACAGTGCCAACAAGTCCACAGAGATTGATCATCACTTGTATGAATTTGGGTCTGTGGAATACCATATCCAGTCATCAGCTTCAGATGAACACATTACATACTTGTCAATATCAACTCCACTACTTACCCAAGAAGTCCTGTTACCATATGGGTTTTCACATCGTACCAAACAGATGGTAACAGCAATTTGTCCTGATGCTGTTGAGATCATTGAACCTGCAAAAGAAGGATACCAGCTTACTTTAAGGCTTGATTTTGCTAAATTGCCAAACGGAAAAGATTCACTGAAGGTAATTGCTGAGATTTCTGCTGTGCAAGCAAGAATATTAAGTTCTCGGCTTAAAGAAATTTTGATGAATGTCAACTCCCAAGATTCATATCAAGGGATGTATACGCCAATCAAGCTTGTGTATCGCCCAAGTGAGCCTTTCTTCATAATTATACAGCCACAGAAAATCATAGCAGTATTCCCCATACATTTTACAGACAAACCAGATGTCATTATCGCAACAACCTTCTTTCAGGAACTTATGGATGTTGGAAGCTCTGAAAAATGGGCCAAAGCACCTCCTTGTTGCTGGTCACCAATTCCACCTCCAGGGTTAAGAGGGGAACTTTTTGAAGACTTGAGTACCACAGGAGGATTTGTGTCTTTTGAGATTTCTCCACGGCATGTCAAAGGTAAAAAACTGGACAAGACAGTATGGAGCTTATTGAATTTCTATGCCTATGTTAAATTCCATGTAAAGAGTACCAGAAGTTTTATTCAGAGAAGGATGAGAAAGCGTTTGGAGGGACTAGTTGAGCTCCTTCATAAGCGCAACATAAAAGTCGAAGATGAAGAAGAAGAAAAGCGAAGACGCAAGATTCAAGGATTCAAGTGTACGATAAGGATAGCCAATCTACCAAAACTTTCTGTCCTTAAACGAAGATATAATGGATTCAGCAGGACGATCAAGAGAATCCGATCTCGAATTAGAATCCATGGATTCGGGCGATTTCGTCACCGATGGTTGAAAATACCAAAGTTCTCTTCTTCAATGGGGTATACCAAATTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008360 GO:0009653 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022603 GO:0022604 GO:0022607 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

382

Amino Acids

44.16

Weight (kDa)

9.85

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	100 - 301	1.7e-29	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33385 AT2G33385 AT2G33385 AT2G33385
fragaria_vesca	FvH4_4g04380 FvH4_4g04380
malus_domestica	MD16G1224900.v1.1
prunus_persica	Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0394951
rosa_laevigata	RLG00000009656
rosa_multiflora	Rmu_sc0005802.1_g000026
rosa_roxburghii	Rroxscaffold_5G00339920
rosa_rugosa	Rorug03G0360500.1 Rorug03G0360600.1 Rorug03G0360700.1
rosa_samantha	Rh4AG056000 Rh4BG054600 Rh4CG060500 Rh4DG051900
rosa_wichuraiana	Rw4G004460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	310
AccI	GTMKAC	2 cut(s)	476, 1133
AcsI	RAATTY	4 cut(s)	128, 432, 802, 821
AcuI	CTGAAG	2 cut(s)	150, 392
AfaI	GTAC	4 cut(s)	250, 718, 838, 970
AfiI	CCNNNNNNNGG	1 cut(s)	683
AgsI	TTSAA	8 cut(s)	61, 299, 707, 802, 956, 964, 1102, 1125
AhlI	ACTAGT	1 cut(s)	883
AjnI	CCWGG	1 cut(s)	682
AjuI	GAANNNNNNNTTGG	2 cut(s)	1102, 1134
AluBI	AGCT	7 cut(s)	56, 164, 322, 490, 630, 795, 892
AluI	AGCT	7 cut(s)	56, 164, 322, 490, 630, 795, 892
Alw21I	GWGCWC	1 cut(s)	894
AoxI	GGCC	2 cut(s)	45, 642
ApoI	RAATTY	4 cut(s)	128, 432, 802, 821
ArsI	GACNNNNNNTTYG	2 cut(s)	567, 599
Asp700I	GAANNNNTTC	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	906
AspS9I	GGNCC	2 cut(s)	45, 642
AsuHPI	GGTGA	2 cut(s)	660, 1082
BaeI	ACNNNNGTAYC	2 cut(s)	700, 733
BanII	GRGCYC	1 cut(s)	894
BarI	GAAGNNNNNNTAC	2 cut(s)	210, 242
BbsI	GAAGAC	2 cut(s)	714, 949
Bbv12I	GWGCWC	1 cut(s)	894
BccI	CCATC	2 cut(s)	253, 1089
BceAI	ACGGC	1 cut(s)	770
BciT130I	CCWGG	1 cut(s)	684
BciVI	GTATCC	1 cut(s)	308
BclI	TGATCA	1 cut(s)	112
BcuI	ACTAGT	1 cut(s)	883
BfaI	CTAG	1 cut(s)	884
BfuAI	ACCTGC	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	684
BmgT120I	GGNCC	2 cut(s)	45, 642
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	1 cut(s)	271
BpiI	GAAGAC	2 cut(s)	714, 949
BplI	GAGNNNNNCTC	4 cut(s)	32, 64, 34, 66
BpmI	CTGGAG	2 cut(s)	36, 666
BpuEI	CTTGAG	1 cut(s)	733
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	3 cut(s)	683, 752, 1069
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	683
Bse1I	ACTGG	2 cut(s)	154, 780
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	3 cut(s)	683, 752, 1069
BseGI	GGATG	3 cut(s)	477, 625, 867
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	683
BseMII	CTCAG	2 cut(s)	37, 375
BseNI	ACTGG	2 cut(s)	154, 780
BshFI	GGCC	2 cut(s)	47, 644
BsiHKAI	GWGCWC	1 cut(s)	894
BslFI	GGGAC	1 cut(s)	894
BslI	CCNNNNNNNGG	1 cut(s)	683
BsmFI	GGGAC	1 cut(s)	894
BsnI	GGCC	2 cut(s)	47, 644
Bsp1286I	GDGCHC	1 cut(s)	894
Bsp143I	GATC	4 cut(s)	112, 291, 1038, 1052
Bsp19I	CCATGG	1 cut(s)	1069
BspANI	GGCC	2 cut(s)	47, 644
BspCNI	CTCAG	2 cut(s)	36, 376
BspMI	ACCTGC	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	154, 780
BssECI	CCNNGG	3 cut(s)	683, 752, 1069
BssMI	GATC	4 cut(s)	112, 291, 1038, 1052
BssNAI	GTATAC	2 cut(s)	477, 1134
BssT1I	CCWWGG	1 cut(s)	1069
Bst1107I	GTATAC	2 cut(s)	477, 1134
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	89, 787
Bst6I	CTCTTC	1 cut(s)	1123
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	23, 384
BstDSI	CCRYGG	2 cut(s)	752, 1069
BstEII	GGTNACC	1 cut(s)	666
BstF5I	GGATG	3 cut(s)	477, 625, 867
BstHHI	GCGC	1 cut(s)	906
BstKTI	GATC	4 cut(s)	115, 294, 1041, 1055
BstMBI	GATC	4 cut(s)	112, 291, 1038, 1052
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 401, 487
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	761
BstPI	GGTNACC	1 cut(s)	666
BstSCI	CCNGG	1 cut(s)	682
BstV2I	GAAGAC	2 cut(s)	714, 949
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstZ17I	GTATAC	2 cut(s)	477, 1134
BsuI	GTATCC	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	47, 644
BtgI	CCRYGG	2 cut(s)	752, 1069
BtsCI	GGATG	3 cut(s)	477, 625, 867
BtsIMutI	CAGTG	2 cut(s)	94, 368
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	402
CfoI	GCGC	1 cut(s)	906
Cfr13I	GGNCC	2 cut(s)	45, 642
CseI	GACGC	1 cut(s)	954
Csp6I	GTAC	4 cut(s)	249, 717, 837, 969
CspCI	CAANNNNNGTGG	2 cut(s)	91, 126
CviAII	CATG	3 cut(s)	758, 827, 1070
CviQI	GTAC	4 cut(s)	249, 717, 837, 969
DdeI	CTNAG	2 cut(s)	23, 384
DpnI	GATC	4 cut(s)	114, 293, 1040, 1054
DpnII	GATC	4 cut(s)	112, 291, 1038, 1052
Eam1104I	CTCTTC	1 cut(s)	1123
EarI	CTCTTC	1 cut(s)	1123
Ecl136II	GAGCTC	1 cut(s)	892
Eco130I	CCWWGG	1 cut(s)	1069
Eco24I	GRGCYC	1 cut(s)	894
Eco53kI	GAGCTC	1 cut(s)	892
Eco57I	CTGAAG	2 cut(s)	150, 392
Eco91I	GGTNACC	1 cut(s)	666
EcoICRI	GAGCTC	1 cut(s)	892
EcoO109I	RGGNCCY	1 cut(s)	45
EcoO65I	GGTNACC	1 cut(s)	666
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	1069
EcoT38I	GRGCYC	1 cut(s)	894
ErhI	CCWWGG	1 cut(s)	1069
FaeI	CATG	3 cut(s)	761, 830, 1073
FalI	AAGNNNNNCTT	2 cut(s)	496, 528
FaqI	GGGAC	1 cut(s)	894
FatI	CATG	3 cut(s)	757, 826, 1069
FauNDI	CATATG	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	112
FblI	GTMKAC	2 cut(s)	476, 1133
FokI	GGATG	3 cut(s)	484, 632, 874
FriOI	GRGCYC	1 cut(s)	894
FspBI	CTAG	1 cut(s)	884
GlaI	GCGC	1 cut(s)	905
GsuI	CTGGAG	2 cut(s)	36, 666
HaeIII	GGCC	2 cut(s)	47, 644
HgaI	GACGC	1 cut(s)	954
HhaI	GCGC	1 cut(s)	906
Hin1II	CATG	3 cut(s)	761, 830, 1073
Hin6I	GCGC	1 cut(s)	904
HinP1I	GCGC	1 cut(s)	904
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	8 cut(s)	365, 458, 952, 960, 1026, 1047, 1065, 1074
HphI	GGTGA	2 cut(s)	660, 1082
Hpy166II	GTNNAC	5 cut(s)	102, 448, 477, 969, 1134
Hpy188I	TCNGA	4 cut(s)	169, 634, 855, 1052
Hpy188III	TCNNGA	4 cut(s)	278, 608, 1042, 1056
Hpy8I	GTNNAC	5 cut(s)	102, 448, 477, 969, 1134
HpyAV	CCTTC	7 cut(s)	4, 55, 305, 367, 610, 852, 905
HpyCH4III	ACNGT	2 cut(s)	89, 787
HpyCH4V	TGCA	2 cut(s)	305, 400
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 401, 487
HpyF3I	CTNAG	2 cut(s)	23, 384
Hsp92II	CATG	3 cut(s)	761, 830, 1073
HspAI	GCGC	1 cut(s)	904
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	112, 291, 1038, 1052
LmnI	GCTCC	2 cut(s)	792, 897
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	884
MaeIII	GTNAC	4 cut(s)	225, 262, 666, 1088
MalI	GATC	4 cut(s)	114, 293, 1040, 1054
MboI	GATC	4 cut(s)	112, 291, 1038, 1052
MhlI	GDGCHC	1 cut(s)	894
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	7 cut(s)	36, 58, 663, 686, 690, 719, 871
MroXI	GAANNNNTTC	1 cut(s)	364
MseI	TTAA	6 cut(s)	329, 413, 426, 689, 819, 1008
MslI	CAYNNNNRTG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	684
MvaI	CCWGG	1 cut(s)	684
MwoI	GCNNNNNNNGC	3 cut(s)	53, 401, 487
NcoI	CCATGG	1 cut(s)	1069
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	4 cut(s)	112, 291, 1038, 1052
NlaIII	CATG	3 cut(s)	761, 830, 1073
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	2 cut(s)	666, 1088
NspI	RCATGY	1 cut(s)	761
PdmI	GAANNNNTTC	1 cut(s)	364
PfeI	GAWTC	8 cut(s)	365, 458, 952, 960, 1026, 1047, 1065, 1074
Psp124BI	GAGCTC	1 cut(s)	894
Psp6I	CCWGG	1 cut(s)	682
PspEI	GGTNACC	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	682
PspPI	GGNCC	2 cut(s)	45, 642
RsaI	GTAC	4 cut(s)	250, 718, 838, 970
RsaNI	GTAC	4 cut(s)	249, 717, 837, 969
RseI	CAYNNNNRTG	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	894
SaqAI	TTAA	6 cut(s)	329, 413, 426, 689, 819, 1008
Sau3AI	GATC	4 cut(s)	112, 291, 1038, 1052
Sau96I	GGNCC	2 cut(s)	45, 642
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	1 cut(s)	894
SfaNI	GCATC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	712
SmoI	CTYRAG	1 cut(s)	712
SpeI	ACTAGT	1 cut(s)	883
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	1 cut(s)	884
SstI	GAGCTC	1 cut(s)	894
StyD4I	CCNGG	1 cut(s)	682
StyI	CCWWGG	1 cut(s)	1069
TaaI	ACNGT	2 cut(s)	89, 787
TaqI	TCGA	2 cut(s)	918, 1057
TfiI	GAWTC	8 cut(s)	365, 458, 952, 960, 1026, 1047, 1065, 1074
Tru1I	TTAA	6 cut(s)	329, 413, 426, 689, 819, 1008
Tru9I	TTAA	6 cut(s)	329, 413, 426, 689, 819, 1008
TscAI	CASTG	2 cut(s)	94, 375
TseFI	GTSAC	2 cut(s)	666, 1088
Tsp45I	GTSAC	2 cut(s)	666, 1088
TspDTI	ATGAA	7 cut(s)	141, 186, 450, 455, 508, 887, 939
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	2 cut(s)	94, 375
XapI	RAATTY	4 cut(s)	128, 432, 802, 821
XceI	RCATGY	1 cut(s)	761
XmiI	GTMKAC	2 cut(s)	476, 1133
XmnI	GAANNNNTTC	1 cut(s)	364
XspI	CTAG	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.