Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0017640

Physical Location & Seq

Genomic Coordinates Forward (+)

4113316 .. 4119493

Gene Structure 6178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAGAAGTGCACAAACCACCCAGGCAACCACCCAAGAAAAGGTTAAGCCCCCACAACCGATCATTTCCAACTTGACCCAGAATAAGACACTTGAGAATGCCTTGAAGGACTACGAAGCAGTCATAGGTATCAAAACCCATGTCCAGCTATTCACTCTTACTAAGGTCATTGAGTCTGCTGTGAAAGTTGGACTTGCACTCAATTGCAAATTGGCACTGAACTTGAAGTTTTATAGGAAACAATACTTCTATGCTGACCTTCCAAAGCGGTACCAAATATCCCAGTTTGATGTTCTAATTGCAATTGGTGGCTACATTGATTTGGATATTCCAGTAGAGTTTGGTGGTGGGCACAAGAAGTTTGGCGTTACAAGAGTTCACATGGAAGAAGATGCAGAGAAGTTGATGCATTCAGACGATGGAAGTTACTCACATGATAGTACCTTTGTTGATCTAACTGGAGCGGGTGTGCCCTTGCTTGAGATTGTTTCTGAACCTGATATGAGAAATGGTTCACTTTGTTTTGATGGCAATGTTTCTGTCCGACCAATTGGGCAATCACAGTTTGGGAAAAAGGGTCGACGCCTCAATAGTTTGCAAAGAACCATAACAGTTACTATACCGGTTGCAGATATCATAGTAACGAAGGCCAATCCAGTTCCTCCGAGGGTTTTAATGGCTCACCAAGAAAAGGCGGTGGGTGACTACAGATGGGACACACGAGCTTATGATTCACCTGCAAAAGCTGAACAAGGCAATCTACATGAAGTACGTGCAAGCAAGGCAAGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050567 GO:0070681 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

GatB_N GatB_Yqey

Protein Analysis

265

Amino Acids

29.27

Weight (kDa)

8.9

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatB_N	PF02934	55 - 170	3.9e-32	GatB/GatE catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04730
rosa_chinensis	RchiOBHm_Chr4g0395921
rosa_laevigata	RLG00000022853
rosa_roxburghii	Rroxscaffold_1G00041950 Rroxscaffold_1G00043970
rosa_rugosa	Rorug07G0205900
rosa_samantha	Rh4BG062700 Rh4CG069000 Rh7AG206700 Rh7BG206200 Rh7BG337300 Rh7DG213900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	745
Acc36I	ACCTGC	1 cut(s)	745
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	270
AccBSI	CCGCTC	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	580
AciI	CCGC	3 cut(s)	268, 464, 695
AcyI	GRCGYC	1 cut(s)	583
AfaI	GTAC	3 cut(s)	272, 442, 771
AfiI	CCNNNNNNNGG	2 cut(s)	40, 691
AgeI	ACCGGT	1 cut(s)	622
AgsI	TTSAA	2 cut(s)	106, 226
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	3 cut(s)	148, 725, 746
AluI	AGCT	3 cut(s)	148, 725, 746
Alw21I	GWGCWC	1 cut(s)	13
Alw44I	GTGCAC	1 cut(s)	9
AoxI	GGCC	1 cut(s)	648
ApaLI	GTGCAC	1 cut(s)	9
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AsiGI	ACCGGT	1 cut(s)	622
Asp700I	GAANNNNTTC	1 cut(s)	511
Asp718I	GGTACC	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	674, 713, 726
BaeGI	GKGCMC	3 cut(s)	13, 354, 474
BanI	GGYRCC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	720
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	3 cut(s)	413, 521, 705
BciT130I	CCWGG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	706
BfuAI	ACCTGC	1 cut(s)	745
Bme1390I	CCNGG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	23
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	2 cut(s)	382, 396
BmuI	ACTGGG	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	480
BpuEI	CTTGAG	2 cut(s)	113, 500
BsaAI	YACGTR	1 cut(s)	773
BsaHI	GRCGYC	1 cut(s)	583
BsaJI	CCNNGG	2 cut(s)	21, 665
BsaWI	WCCGGW	1 cut(s)	622
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 691
Bse118I	RCCGGY	1 cut(s)	622
Bse1I	ACTGG	4 cut(s)	283, 332, 463, 656
Bse3DI	GCAATG	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	2 cut(s)	21, 665
BseLI	CCNNNNNNNGG	2 cut(s)	40, 691
BseMI	GCAATG	1 cut(s)	538
BseNI	ACTGG	4 cut(s)	283, 332, 463, 656
BseSI	GKGCMC	3 cut(s)	13, 354, 474
BshFI	GGCC	1 cut(s)	650
BshNI	GGYRCC	1 cut(s)	270
BshTI	ACCGGT	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	623
BslFI	GGGAC	1 cut(s)	728
BslI	CCNNNNNNNGG	2 cut(s)	40, 691
BsmFI	GGGAC	1 cut(s)	728
BsmI	GAATGC	2 cut(s)	103, 409
BsnI	GGCC	1 cut(s)	650
Bsp1286I	GDGCHC	3 cut(s)	13, 354, 474
Bsp143I	GATC	2 cut(s)	60, 451
BspACI	CCGC	3 cut(s)	268, 464, 695
BspANI	GGCC	1 cut(s)	650
BspLI	GGNNCC	1 cut(s)	272
BspMI	ACCTGC	1 cut(s)	745
BspT107I	GGYRCC	1 cut(s)	270
BsrBI	CCGCTC	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	622
BsrI	ACTGG	4 cut(s)	283, 332, 463, 656
BssAI	RCCGGY	1 cut(s)	622
BssECI	CCNNGG	2 cut(s)	21, 665
BssMI	GATC	2 cut(s)	60, 451
BssNI	GRCGYC	1 cut(s)	583
BssSI	CACGAG	1 cut(s)	720
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	564, 613
BstACI	GRCGYC	1 cut(s)	583
BstBAI	YACGTR	1 cut(s)	773
BstC8I	GCNNGC	2 cut(s)	778, 787
BstDEI	CTNAG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	63, 454
BstMBI	GATC	2 cut(s)	60, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	782, 786
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	706
BstSLI	GKGCMC	3 cut(s)	13, 354, 474
BsuRI	GGCC	1 cut(s)	650
BtsIMutI	CAGTG	1 cut(s)	215
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	2 cut(s)	778, 787
Cfr10I	RCCGGY	1 cut(s)	622
CseI	GACGC	1 cut(s)	591
Csp6I	GTAC	3 cut(s)	271, 441, 770
CspAI	ACCGGT	1 cut(s)	622
CviAII	CATG	4 cut(s)	140, 382, 434, 764
CviJI	RGCY	7 cut(s)	49, 148, 312, 650, 680, 725, 746
CviKI_1	RGCY	7 cut(s)	49, 148, 312, 650, 680, 725, 746
CviQI	GTAC	3 cut(s)	271, 441, 770
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	62, 453
DpnII	GATC	2 cut(s)	60, 451
Eco32I	GATATC	1 cut(s)	634
EcoRII	CCWGG	1 cut(s)	21
EcoRV	GATATC	1 cut(s)	634
EcoT22I	ATGCAT	1 cut(s)	411
FaeI	CATG	4 cut(s)	143, 385, 437, 767
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	1 cut(s)	728
FatI	CATG	4 cut(s)	139, 381, 433, 763
FauI	CCCGC	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	580
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	650
HapII	CCGG	1 cut(s)	623
HgaI	GACGC	1 cut(s)	591
Hin1I	GRCGYC	1 cut(s)	583
Hin1II	CATG	4 cut(s)	143, 385, 437, 767
HincII	GTYRAC	1 cut(s)	581
HindII	GTYRAC	1 cut(s)	581
HinfI	GANTC	2 cut(s)	173, 731
HpaII	CCGG	1 cut(s)	623
HphI	GGTGA	3 cut(s)	674, 713, 726
Hpy166II	GTNNAC	4 cut(s)	11, 379, 515, 581
Hpy188I	TCNGA	4 cut(s)	415, 493, 545, 666
Hpy8I	GTNNAC	4 cut(s)	11, 379, 515, 581
Hpy99I	CGWCG	1 cut(s)	585
HpyAV	CCTTC	3 cut(s)	100, 269, 640
HpyCH4III	ACNGT	2 cut(s)	564, 613
HpyCH4IV	ACGT	1 cut(s)	772
HpyF10VI	GCNNNNNNNGC	2 cut(s)	782, 786
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	772
Hsp92I	GRCGYC	1 cut(s)	583
Hsp92II	CATG	4 cut(s)	143, 385, 437, 767
KpnI	GGTACC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	60, 451
LmnI	GCTCC	1 cut(s)	461
LweI	GCATC	2 cut(s)	382, 396
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	5 cut(s)	367, 425, 613, 640, 701
MalI	GATC	2 cut(s)	62, 453
MbiI	CCGCTC	1 cut(s)	464
MboI	GATC	2 cut(s)	60, 451
MboII	GAAGA	2 cut(s)	398, 401
MfeI	CAATTG	3 cut(s)	202, 303, 549
MhlI	GDGCHC	3 cut(s)	13, 354, 474
MluCI	AATT	5 cut(s)	202, 209, 297, 303, 549
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	3 cut(s)	93, 169, 568
MnlI	CCTC	3 cut(s)	596, 660, 672
Mph1103I	ATGCAT	1 cut(s)	411
MroXI	GAANNNNTTC	1 cut(s)	511
MseI	TTAA	2 cut(s)	45, 674
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	1 cut(s)	23
MunI	CAATTG	3 cut(s)	202, 303, 549
Mva1269I	GAATGC	2 cut(s)	103, 409
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	782, 786
NdeII	GATC	2 cut(s)	60, 451
NlaIII	CATG	4 cut(s)	143, 385, 437, 767
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	701
NsiI	ATGCAT	1 cut(s)	411
PaqCI	CACCTGC	1 cut(s)	745
PctI	GAATGC	2 cut(s)	103, 409
PdmI	GAANNNNTTC	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	731
PinAI	ACCGGT	1 cut(s)	622
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Ppu21I	YACGTR	1 cut(s)	773
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	272
RsaI	GTAC	3 cut(s)	272, 442, 771
RsaNI	GTAC	3 cut(s)	271, 441, 770
SalI	GTCGAC	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	45, 674
Sau3AI	GATC	2 cut(s)	60, 451
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	3 cut(s)	13, 354, 474
SfaNI	GCATC	2 cut(s)	382, 396
SfcI	CTRYAG	1 cut(s)	706
SmlI	CTYRAG	2 cut(s)	92, 479
SmoI	CTYRAG	2 cut(s)	92, 479
Sse9I	AATT	5 cut(s)	202, 209, 297, 303, 549
SsiI	CCGC	3 cut(s)	268, 464, 695
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	564, 613
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	1 cut(s)	580
TasI	AATT	5 cut(s)	202, 209, 297, 303, 549
TfiI	GAWTC	1 cut(s)	731
Tru1I	TTAA	2 cut(s)	45, 674
Tru9I	TTAA	2 cut(s)	45, 674
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	701
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	1 cut(s)	780
TspRI	CASTG	1 cut(s)	222
VneI	GTGCAC	1 cut(s)	9
XmiI	GTMKAC	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	511
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.