Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0017640

Physical Location & Seq

Genomic Coordinates Reverse (-)

13335301 .. 13339670

Gene Structure 4370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGATCACACAGGTAACTAATTTTAAGAAGAGGGACTACTCTGTTGCAATTAGAAGAAAGCTGTATCTGCTTCCTAATAACCTAGCAAAGATGGCAAACAAGAGTGGAATACAGGAAAAAGGAAAGGACAATCCTGAATATGCCAAATTGCTTAAAAAGGGAATTAACCTTGATTTGGAAGAGAAACTAGATATGATGTTCCAGCAAGTTACTGCAACTAGTGTTCATACTTGGGCACCATCATCTGGTGTACTTCTATATGATGATATGGAAGTTAACAATGTTACAGTTCCGTTAGATAGCGATGATAATTTGACCCGTCCCGTTGAGGTCATTGCGGGTTCTTTGGGTAAGAGGAAAAGGACACCAACAAAACAACAAATTGCTCATTTACATATTAGCTATCTTAATTATTTGGTTGGGAACAATACTTTTACGGACCTTCCAAATGGGTACCAAATATCCCACTTTGATGTTCCAATTGCAACCGGTGGTCACATTGATTTGGATATTCTAGTAGAGTTTGGTGGTGGGCATAGGAAGTTTGGCATTACAAGACTTCACATGGAAGAGGACGCAAGGAAGCTTATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050567 GO:0070681 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

GatB_N GatB_Yqey

Protein Analysis

199

Amino Acids

22.34

Weight (kDa)

7.92

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatB_N	PF02934	144 - 197	2.4e-10	GatB/GatE catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04730
rosa_chinensis	RchiOBHm_Chr4g0395921
rosa_laevigata	RLG00000022853
rosa_roxburghii	Rroxscaffold_1G00041950 Rroxscaffold_1G00043970
rosa_rugosa	Rorug07G0205900
rosa_samantha	Rh4BG062700 Rh4CG069000 Rh7AG206700 Rh7BG206200 Rh7BG337300 Rh7DG213900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	453
AccB1I	GGYRCC	2 cut(s)	235, 453
AccB7I	CCANNNNNTGG	1 cut(s)	245
AciI	CCGC	1 cut(s)	338
AfaI	GTAC	2 cut(s)	252, 455
AfiI	CCNNNNNNNGG	2 cut(s)	175, 245
AgeI	ACCGGT	1 cut(s)	488
AhlI	ACTAGT	1 cut(s)	218
AluBI	AGCT	3 cut(s)	61, 402, 586
AluI	AGCT	3 cut(s)	61, 402, 586
AsiGI	ACCGGT	1 cut(s)	488
Asp718I	GGTACC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	439
BaeGI	GKGCMC	1 cut(s)	238
BanI	GGYRCC	2 cut(s)	235, 453
BarI	GAAGNNNNNNTAC	2 cut(s)	20, 52
BccI	CCATC	2 cut(s)	85, 247
BclI	TGATCA	1 cut(s)	3
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	4 cut(s)	83, 188, 219, 515
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	2 cut(s)	237, 455
BsaWI	WCCGGW	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 245
Bse118I	RCCGGY	1 cut(s)	488
Bse3DI	GCAATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	2 cut(s)	175, 245
BseMI	GCAATG	1 cut(s)	333
BseSI	GKGCMC	1 cut(s)	238
BshNI	GGYRCC	2 cut(s)	235, 453
BshTI	ACCGGT	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	2 cut(s)	47, 306
BslI	CCNNNNNNNGG	2 cut(s)	175, 245
BsmFI	GGGAC	2 cut(s)	47, 306
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	338
BspLI	GGNNCC	2 cut(s)	237, 455
BspT107I	GGYRCC	2 cut(s)	235, 453
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	488
BssAI	RCCGGY	1 cut(s)	488
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	3 cut(s)	23, 174, 564
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 92
BstSLI	GKGCMC	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	439
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	251, 454
CspAI	ACCGGT	1 cut(s)	488
CviAII	CATG	1 cut(s)	565
CviJI	RGCY	3 cut(s)	61, 402, 586
CviKI_1	RGCY	3 cut(s)	61, 402, 586
CviQI	GTAC	2 cut(s)	251, 454
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	23, 174, 564
EarI	CTCTTC	3 cut(s)	23, 174, 564
Eco47I	GGWCC	1 cut(s)	439
FaeI	CATG	1 cut(s)	568
FaiI	YATR	9 cut(s)	141, 194, 228, 259, 261, 269, 396, 537, 566
FaqI	GGGAC	2 cut(s)	47, 306
FatI	CATG	1 cut(s)	564
FauI	CCCGC	1 cut(s)	331
FbaI	TGATCA	1 cut(s)	3
FspBI	CTAG	4 cut(s)	83, 188, 219, 515
HapII	CCGG	1 cut(s)	489
HgaI	GACGC	1 cut(s)	584
Hin1II	CATG	1 cut(s)	568
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	584
HpaI	GTTAAC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	489
Hpy166II	GTNNAC	2 cut(s)	251, 277
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	2 cut(s)	251, 277
HpyAV	CCTTC	1 cut(s)	452
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	3 cut(s)	47, 215, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 92
Hsp92II	CATG	1 cut(s)	568
KpnI	GGTACC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	5 cut(s)	98, 147, 215, 231, 502
MaeI	CTAG	4 cut(s)	83, 188, 219, 515
MaeIII	GTNAC	4 cut(s)	13, 208, 283, 494
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	4 cut(s)	40, 66, 191, 581
MfeI	CAATTG	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	8 cut(s)	19, 48, 146, 162, 310, 381, 409, 480
MnlI	CCTC	4 cut(s)	24, 322, 348, 565
MseI	TTAA	6 cut(s)	24, 153, 165, 276, 408, 595
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	1 cut(s)	489
MunI	CAATTG	1 cut(s)	480
MwoI	GCNNNNNNNGC	2 cut(s)	67, 92
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	568
NlaIV	GGNNCC	2 cut(s)	237, 455
NmuCI	GTSAC	1 cut(s)	494
PflMI	CCANNNNNTGG	1 cut(s)	245
PinAI	ACCGGT	1 cut(s)	488
PspN4I	GGNNCC	2 cut(s)	237, 455
PspPI	GGNCC	1 cut(s)	439
RsaI	GTAC	2 cut(s)	252, 455
RsaNI	GTAC	2 cut(s)	251, 454
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	6 cut(s)	24, 153, 165, 276, 408, 595
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	439
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	8 cut(s)	15, 63, 84, 171, 333, 404, 444, 588
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	471
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	8 cut(s)	19, 48, 146, 162, 310, 381, 409, 480
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	4 cut(s)	83, 188, 219, 515
TaaI	ACNGT	1 cut(s)	289
TasI	AATT	8 cut(s)	19, 48, 146, 162, 310, 381, 409, 480
TatI	WGTACW	1 cut(s)	250
Tru1I	TTAA	6 cut(s)	24, 153, 165, 276, 408, 595
Tru9I	TTAA	6 cut(s)	24, 153, 165, 276, 408, 595
TseFI	GTSAC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	1 cut(s)	215
TspGWI	ACGGA	2 cut(s)	282, 452
Van91I	CCANNNNNTGG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	439
XspI	CTAG	4 cut(s)	83, 188, 219, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.