Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017640

Physical Location & Seq

Genomic Coordinates Reverse (-)

12871619 .. 12871918

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG069000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAACTCGAAGTTTGATCGGAAACAATACTTTTACGCGGACCTTCCAAAGGGTTACCAAATATCCCAGTTTGATGTTCCAATTGCGACTGGTGGCTACATTGATTTGGATATTCCAGTAGAGTTTGGAGGTGGGCATAGGAAGTTCGGCATTACAAGAGTTCACATGGAAGAGGATGCAGGGAAGCTGATGCATTCAGACGACGGAAGTTACTCACAGGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050567 GO:0070681 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

GatB_N GatB_Yqey

Protein Analysis

75

Amino Acids

8.49

Weight (kDa)

5.11

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatB_N	PF02934	2 - 70	9.4e-23	GatB/GatE catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04730
rosa_chinensis	RchiOBHm_Chr4g0395921
rosa_laevigata	RLG00000022853
rosa_roxburghii	Rroxscaffold_1G00041950 Rroxscaffold_1G00043970
rosa_rugosa	Rorug07G0205900
rosa_samantha	Rh4BG062700 Rh4CG069000 Rh7AG206700 Rh7BG206200 Rh7BG337300 Rh7DG213900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AciI	CCGC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	49
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	166, 180
BmuI	ACTGGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	3 cut(s)	67, 94, 116
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseNI	ACTGG	3 cut(s)	67, 94, 116
Bsh1236I	CGCG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	38
BsrI	ACTGG	3 cut(s)	67, 94, 116
BssMI	GATC	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	165
BstEII	GGTNACC	1 cut(s)	53
BstENI	CCTNNNNNAGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstPI	GGTNACC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	40
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	2 cut(s)	96, 187
CviKI_1	RGCY	2 cut(s)	96, 187
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	40
Eco91I	GGTNACC	1 cut(s)	53
EcoNI	CCTNNNNNAGG	1 cut(s)	47
EcoO65I	GGTNACC	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	195
FaeI	CATG	1 cut(s)	169
FaiI	YATR	2 cut(s)	138, 167
FatI	CATG	1 cut(s)	165
FokI	GGATG	1 cut(s)	188
Hin1II	CATG	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	21, 199
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	179, 193
Hsp92II	CATG	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	16
LpnPI	CCDG	5 cut(s)	75, 80, 129, 165, 203
LweI	GCATC	2 cut(s)	166, 180
MaeIII	GTNAC	2 cut(s)	53, 209
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	182
MfeI	CAATTG	1 cut(s)	81
MluCI	AATT	1 cut(s)	81
MnlI	CCTC	2 cut(s)	122, 166
Mph1103I	ATGCAT	1 cut(s)	195
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	193
MvnI	CGCG	1 cut(s)	38
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	169
NsiI	ATGCAT	1 cut(s)	195
PctI	GAATGC	1 cut(s)	193
PspEI	GGTNACC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	40
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	40
SetI	ASST	3 cut(s)	45, 133, 189
SfaNI	GCATC	2 cut(s)	166, 180
SgeI	CNNG	8 cut(s)	19, 49, 79, 102, 128, 168, 178, 192
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	1 cut(s)	38
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	40
XagI	CCTNNNNNAGG	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.