Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0017640

Physical Location & Seq

Genomic Coordinates Reverse (-)

35155262 .. 35155975

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG337300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCCTCCACAATTTTCAGAAGCTTTCAAACCCACCCTTTTGTGTTCCATCCCACCACATTACTTAGAAGAAAGAATGTTCTTTTGTATTGTACAATGAGAAGTCAACAAATCCAGATAGCCACCCAAGAGAAGGTTAAGCCACAAGTGAAAGTTTCTAACTTGAACCCGAATAAGAAGCTGGAGAATATCTCGAAGGACTATGAAGCAGTCATAGGTATCGAAACCCATGTCCAGCTATCTACTCAGACCAAGGCCTTTTGTAGTTGCCCTTATAATTACGGCTCTCAACCAAACACTAGTATTTGCCCCATTTGTATGGGTCTGCCTGGTGCTTTACCGATTTTGAACTTTAAGGTCATTGAGTCTGCTGTGAAAGTTGGGCTTGCACTCAATTGCAAATTGGCAATGAACTCGAAGTTTGATAGGAAACAATACTTTTACGCGGACCTTCCAAAGGGGTACCAAATATCCCAGTTTGATGTTCCAATTGCGACCGGTAGCTACATTGATTTGGATATTCCAGTAGAGTTTGGTGGTGGGCATAGGAAGTTTGGCATTACAAGAGTTCACATGGAAGAGAATGCAGGGAAGCTGATGCATTCAGACGATGGAAGTTACTCACAGGAAAGTACATTTCGCTTTGTACTTGCCATCAACATTTTTCTAGTTCATATAAAATACTGTTTGTTTCTTTTCTGCAGGTTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050567 GO:0070681 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

GatB_N GatB_Yqey

Protein Analysis

237

Amino Acids

26.85

Weight (kDa)

9.15

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatB_N	PF02934	71 - 208	9.2e-51	GatB/GatE catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04730
rosa_chinensis	RchiOBHm_Chr4g0395921
rosa_laevigata	RLG00000022853
rosa_roxburghii	Rroxscaffold_1G00041950 Rroxscaffold_1G00043970
rosa_rugosa	Rorug07G0205900
rosa_samantha	Rh4BG062700 Rh4CG069000 Rh7AG206700 Rh7BG206200 Rh7BG337300 Rh7DG213900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
Acc36I	ACCTGC	1 cut(s)	693
Acc65I	GGTACC	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	462
AccII	CGCG	1 cut(s)	446
AciI	CCGC	1 cut(s)	446
AfaI	GTAC	4 cut(s)	94, 464, 634, 648
AfiI	CCNNNNNNNGG	2 cut(s)	133, 457
AgeI	ACCGGT	1 cut(s)	497
AgsI	TTSAA	3 cut(s)	29, 166, 349
AhlI	ACTAGT	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	5 cut(s)	24, 181, 238, 504, 595
AluI	AGCT	5 cut(s)	24, 181, 238, 504, 595
AoxI	GGCC	2 cut(s)	3, 255
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AsiGI	ACCGGT	1 cut(s)	497
Asp718I	GGTACC	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	462
BccI	CCATC	3 cut(s)	57, 605, 662
BceAI	ACGGC	1 cut(s)	298
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BciT130I	CCWGG	1 cut(s)	330
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	2 cut(s)	300, 668
BfmI	CTRYAG	1 cut(s)	700
BfuAI	ACCTGC	1 cut(s)	693
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	1 cut(s)	464
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	1 cut(s)	588
BmuI	ACTGGG	1 cut(s)	469
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 457
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	2 cut(s)	475, 524
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	2 cut(s)	133, 457
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	2 cut(s)	475, 524
Bsh1236I	CGCG	1 cut(s)	446
Bsh1285I	CGRYCG	1 cut(s)	498
BshFI	GGCC	2 cut(s)	5, 257
BshNI	GGYRCC	1 cut(s)	462
BshTI	ACCGGT	1 cut(s)	497
BsiEI	CGRYCG	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	133, 457
BsmI	GAATGC	2 cut(s)	589, 601
BsnI	GGCC	2 cut(s)	5, 257
Bsp1407I	TGTACA	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	708
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	2 cut(s)	5, 257
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	1 cut(s)	464
BspMAI	CTGCAG	1 cut(s)	704
BspMI	ACCTGC	1 cut(s)	693
BspT107I	GGYRCC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	497
BsrGI	TGTACA	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	475, 524
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	708
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	686
Bst6I	CTCTTC	1 cut(s)	573
BstAUI	TGTACA	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	2 cut(s)	65, 246
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	49
BstFNI	CGCG	1 cut(s)	446
BstKTI	GATC	1 cut(s)	711
BstMBI	GATC	1 cut(s)	708
BstMCI	CGRYCG	1 cut(s)	498
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	700
BstUI	CGCG	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	5, 257
BtsCI	GGATG	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	693
Cac8I	GCNNGC	1 cut(s)	387
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	4 cut(s)	93, 463, 633, 647
CspAI	ACCGGT	1 cut(s)	497
CviAII	CATG	2 cut(s)	230, 574
CviQI	GTAC	4 cut(s)	93, 463, 633, 647
DdeI	CTNAG	2 cut(s)	65, 246
DpnI	GATC	1 cut(s)	710
DpnII	GATC	1 cut(s)	708
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Eco130I	CCWWGG	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	448
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	2 cut(s)	233, 577
FaiI	YATR	9 cut(s)	204, 215, 231, 276, 320, 546, 575, 675, 677
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FatI	CATG	2 cut(s)	229, 573
FokI	GGATG	1 cut(s)	36
FspBI	CTAG	2 cut(s)	300, 668
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	5, 257
HapII	CCGG	1 cut(s)	498
Hin1II	CATG	2 cut(s)	233, 577
HincII	GTYRAC	1 cut(s)	107
HindII	GTYRAC	1 cut(s)	107
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	498
Hpy166II	GTNNAC	2 cut(s)	107, 571
Hpy188I	TCNGA	3 cut(s)	20, 249, 607
Hpy188III	TCNNGA	2 cut(s)	115, 193
Hpy8I	GTNNAC	2 cut(s)	107, 571
HpyAV	CCTTC	3 cut(s)	127, 190, 461
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4V	TGCA	5 cut(s)	389, 399, 587, 601, 702
HpyF3I	CTNAG	2 cut(s)	65, 246
Hsp92II	CATG	2 cut(s)	233, 577
KpnI	GGTACC	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	708
LweI	GCATC	1 cut(s)	588
MaeI	CTAG	2 cut(s)	300, 668
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	1 cut(s)	710
MboI	GATC	1 cut(s)	708
MboII	GAAGA	2 cut(s)	81, 590
MfeI	CAATTG	2 cut(s)	394, 489
MluCI	AATT	5 cut(s)	12, 277, 394, 401, 489
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	1 cut(s)	16
Mph1103I	ATGCAT	1 cut(s)	603
MseI	TTAA	2 cut(s)	138, 354
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	330
MunI	CAATTG	2 cut(s)	394, 489
Mva1269I	GAATGC	2 cut(s)	589, 601
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	446
NdeII	GATC	1 cut(s)	708
NlaIII	CATG	2 cut(s)	233, 577
NlaIV	GGNNCC	1 cut(s)	464
NsiI	ATGCAT	1 cut(s)	603
PceI	AGGCCT	1 cut(s)	257
PctI	GAATGC	2 cut(s)	589, 601
PinAI	ACCGGT	1 cut(s)	497
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PsiI	TTATAA	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	464
PspPI	GGNCC	1 cut(s)	448
PstI	CTGCAG	1 cut(s)	704
RsaI	GTAC	4 cut(s)	94, 464, 634, 648
RsaNI	GTAC	4 cut(s)	93, 463, 633, 647
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	138, 354
Sau3AI	GATC	1 cut(s)	708
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	330
SfaNI	GCATC	1 cut(s)	588
SfcI	CTRYAG	1 cut(s)	700
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	299
Sse9I	AATT	5 cut(s)	12, 277, 394, 401, 489
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	446
SspMI	CTAG	2 cut(s)	300, 668
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	686
TaqI	TCGA	3 cut(s)	194, 222, 416
TasI	AATT	5 cut(s)	12, 277, 394, 401, 489
TatI	WGTACW	3 cut(s)	92, 632, 646
Tru1I	TTAA	2 cut(s)	138, 354
Tru9I	TTAA	2 cut(s)	138, 354
TspDTI	ATGAA	3 cut(s)	219, 425, 662
VpaK11BI	GGWCC	1 cut(s)	448
XagI	CCTNNNNNAGG	1 cut(s)	455
XspI	CTAG	2 cut(s)	300, 668
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.