Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0017640

Physical Location & Seq

Genomic Coordinates Reverse (-)

11217254 .. 11217922

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG062700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCCTCCACAATTTTCAGAAGCTTTCAAACCCACCCTTTTGTGTTCCATCCCACTACATTACTTAGAAGAAACAATGTTCTTTTGTATTGCACAATGAGAAGTGAACAAACCCAGACAGCCACCCAAGAGAAGGTTAAGCCACAAGTGAAAGTTTCTAACTTGAACCCGAATAAGAAACTGGAGAATATCTCGAAGGACTATGAAGCAGTCATAGGTATCGAAACCCATGTCCAGCTATCCACTCAGACCAAGGCCTTCTGTAGTTGCCCTTATAATTATGGCTCTCAACCAAACACTAGTATTTGCCCCATTTGTATGGGTCTGCCTGGTGCTTTACCGATTTTGAACTTTAAGGTCATTGAGTCTGCTGTGAAAGTTGGACTTGCACTCAATTGCAAATTGGCAATGAACTCGAAGTTTGATCGGAAACAATACTTTTACGCGGACCTTCCAAAGGGTTACCAAATATCCCAGTTTGATGTTCCAATTGCGACTGGTGGCTACATTGATTTGGATATTCCAGTAGAGTTTGGAGGTGGGCATAGGAAGTTCGGCATTACAAGAGTTCACATGGAAGAGGATGCAGGGAAGCTGATGCATTCAGACGACGGAAGTTACTCACAGGAAAGTACCTTTCGCTTCATACTTGCCATCAACATTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050567 GO:0070681 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

GatB_N GatB_Yqey

Protein Analysis

222

Amino Acids

24.93

Weight (kDa)

8.68

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatB_N	PF02934	71 - 207	5.2e-53	GatB/GatE catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04730
rosa_chinensis	RchiOBHm_Chr4g0395921
rosa_laevigata	RLG00000022853
rosa_roxburghii	Rroxscaffold_1G00041950 Rroxscaffold_1G00043970
rosa_rugosa	Rorug07G0205900
rosa_samantha	Rh4BG062700 Rh4CG069000 Rh7AG206700 Rh7BG206200 Rh7BG337300 Rh7DG213900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
AccII	CGCG	1 cut(s)	446
AciI	CCGC	1 cut(s)	446
AfaI	GTAC	1 cut(s)	634
AfiI	CCNNNNNNNGG	2 cut(s)	133, 457
AgsI	TTSAA	3 cut(s)	29, 166, 349
AhlI	ACTAGT	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	3 cut(s)	24, 238, 595
AluI	AGCT	3 cut(s)	24, 238, 595
AoxI	GGCC	2 cut(s)	3, 255
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AspS9I	GGNCC	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	448
BccI	CCATC	2 cut(s)	57, 662
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BciT130I	CCWGG	1 cut(s)	330
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	2 cut(s)	300, 667
BfmI	CTRYAG	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	2 cut(s)	574, 588
BmuI	ACTGGG	1 cut(s)	469
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 457
Bse1I	ACTGG	4 cut(s)	186, 475, 502, 524
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	2 cut(s)	49, 589
BseLI	CCNNNNNNNGG	2 cut(s)	133, 457
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	4 cut(s)	186, 475, 502, 524
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	2 cut(s)	5, 257
BslI	CCNNNNNNNGG	2 cut(s)	133, 457
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	5, 257
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	2 cut(s)	5, 257
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	4 cut(s)	186, 475, 502, 524
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	424
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	573
BstDEI	CTNAG	2 cut(s)	65, 246
BstEII	GGTNACC	1 cut(s)	461
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	2 cut(s)	49, 589
BstFNI	CGCG	1 cut(s)	446
BstKTI	GATC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	424
BstNI	CCWGG	1 cut(s)	330
BstPI	GGTNACC	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	5, 257
BtsCI	GGATG	2 cut(s)	49, 589
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	633
CviAII	CATG	2 cut(s)	230, 574
CviJI	RGCY	9 cut(s)	5, 24, 122, 142, 238, 257, 285, 504, 595
CviKI_1	RGCY	9 cut(s)	5, 24, 122, 142, 238, 257, 285, 504, 595
CviQI	GTAC	1 cut(s)	633
DdeI	CTNAG	2 cut(s)	65, 246
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Eco130I	CCWWGG	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	448
Eco91I	GGTNACC	1 cut(s)	461
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoO65I	GGTNACC	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	2 cut(s)	233, 577
FaiI	YATR	9 cut(s)	204, 215, 231, 276, 282, 320, 546, 575, 647
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FatI	CATG	2 cut(s)	229, 573
FokI	GGATG	2 cut(s)	36, 596
FspBI	CTAG	2 cut(s)	300, 667
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	5, 257
Hin1II	CATG	2 cut(s)	233, 577
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	1 cut(s)	365
Hpy166II	GTNNAC	2 cut(s)	107, 571
Hpy188I	TCNGA	4 cut(s)	20, 249, 429, 607
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	2 cut(s)	107, 571
Hpy99I	CGWCG	1 cut(s)	614
HpyAV	CCTTC	4 cut(s)	127, 190, 268, 461
HpyCH4V	TGCA	5 cut(s)	93, 389, 399, 587, 601
HpyF3I	CTNAG	2 cut(s)	65, 246
Hsp92II	CATG	2 cut(s)	233, 577
Kzo9I	GATC	1 cut(s)	424
LweI	GCATC	2 cut(s)	574, 588
MaeI	CTAG	2 cut(s)	300, 667
MaeIII	GTNAC	2 cut(s)	461, 617
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	2 cut(s)	81, 590
MfeI	CAATTG	2 cut(s)	394, 489
MluCI	AATT	5 cut(s)	12, 277, 394, 401, 489
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	3 cut(s)	16, 530, 574
Mph1103I	ATGCAT	1 cut(s)	603
MseI	TTAA	2 cut(s)	138, 354
MslI	CAYNNNNRTG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	330
MunI	CAATTG	2 cut(s)	394, 489
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	446
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	2 cut(s)	233, 577
NsiI	ATGCAT	1 cut(s)	603
PceI	AGGCCT	1 cut(s)	257
PctI	GAATGC	1 cut(s)	601
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PsiI	TTATAA	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	328
PspEI	GGTNACC	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	448
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	138, 354
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	330
SetI	ASST	9 cut(s)	26, 138, 220, 240, 360, 453, 541, 597, 638
SfaNI	GCATC	2 cut(s)	574, 588
SfcI	CTRYAG	1 cut(s)	262
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	299
Sse9I	AATT	5 cut(s)	12, 277, 394, 401, 489
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	446
SspMI	CTAG	2 cut(s)	300, 667
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	252
TaqI	TCGA	3 cut(s)	194, 222, 416
TasI	AATT	5 cut(s)	12, 277, 394, 401, 489
Tru1I	TTAA	2 cut(s)	138, 354
Tru9I	TTAA	2 cut(s)	138, 354
TspDTI	ATGAA	3 cut(s)	219, 425, 634
TspGWI	ACGGA	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	448
XagI	CCTNNNNNAGG	1 cut(s)	455
XspI	CTAG	2 cut(s)	300, 667
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.