Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017640

Physical Location & Seq

Genomic Coordinates Forward (+)

62705231 .. 62710871

Gene Structure 5641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGACCTAGCCCGATATTACTACAGACACAGTGAGATCCAAACAAATTTGGCGTTGAAAGGACATCACCGAATGGCATGGATCCCAAAAGCTTCCCACCCTCATCGGGAGTCTAACGCATCACCAAGCATATGCAATCAACCCAAGCATGGTGGATTGATGGGTTGGTTCAAAGGCATTTGGGCAACTTTTCCTTACAAGCTAGGGTACCAAATATCCCACTTTGATGTTCCAACTGTAACCGGTGGCTACATTGATTTGGACATACTAGTAGAGTTTGGTGGTGGGCATAAGAAGTTTGGCATTACAAGACTTCACATGGAAGATGATGCAAGGAAGCTTATTGATTCAGTCGACGGAAGTTACTCGGAGGAAAGAACCCATATTTCCTTGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050567 GO:0070681 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

GatB_N GatB_Yqey

Protein Analysis

132

Amino Acids

15.08

Weight (kDa)

7.94

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatB_N	PF02934	69 - 120	8.8e-08	GatB/GatE catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04730
rosa_chinensis	RchiOBHm_Chr4g0395921
rosa_laevigata	RLG00000022853
rosa_roxburghii	Rroxscaffold_1G00041950 Rroxscaffold_1G00043970
rosa_rugosa	Rorug07G0205900
rosa_samantha	Rh4BG062700 Rh4CG069000 Rh7AG206700 Rh7BG206200 Rh7BG337300 Rh7DG213900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	354
AclWI	GGATC	3 cut(s)	31, 76, 89
AcsI	RAATTY	1 cut(s)	46
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	106, 149
AgeI	ACCGGT	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	58, 172
AhlI	ACTAGT	1 cut(s)	268
AluBI	AGCT	3 cut(s)	92, 202, 340
AluI	AGCT	3 cut(s)	92, 202, 340
AlwI	GGATC	3 cut(s)	31, 76, 89
ApoI	RAATTY	1 cut(s)	46
AsiGI	ACCGGT	1 cut(s)	242
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	59, 114
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	207
BccI	CCATC	1 cut(s)	154
BcuI	ACTAGT	1 cut(s)	268
BfaI	CTAG	3 cut(s)	8, 203, 269
BfmI	CTRYAG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	83, 209
BmsI	GCATC	2 cut(s)	128, 319
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 149
Bse118I	RCCGGY	1 cut(s)	242
BseLI	CCNNNNNNNGG	2 cut(s)	106, 149
BshNI	GGYRCC	1 cut(s)	207
BshTI	ACCGGT	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	106, 149
Bsp143I	GATC	2 cut(s)	36, 81
BspLI	GGNNCC	2 cut(s)	83, 209
BspPI	GGATC	3 cut(s)	31, 76, 89
BspT107I	GGYRCC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	242
BssMI	GATC	2 cut(s)	36, 81
Bst4CI	ACNGT	2 cut(s)	32, 238
BstKTI	GATC	2 cut(s)	39, 84
BstMBI	GATC	2 cut(s)	36, 81
BstSFI	CTRYAG	1 cut(s)	22
BstX2I	RGATCY	2 cut(s)	36, 81
BstYI	RGATCY	2 cut(s)	36, 81
BtsIMutI	CAGTG	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	208
CspAI	ACCGGT	1 cut(s)	242
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	3 cut(s)	78, 149, 319
CviJI	RGCY	5 cut(s)	11, 92, 202, 249, 340
CviKI_1	RGCY	5 cut(s)	11, 92, 202, 249, 340
CviQI	GTAC	1 cut(s)	208
DpnI	GATC	2 cut(s)	38, 83
DpnII	GATC	2 cut(s)	36, 81
Eco47I	GGWCC	1 cut(s)	4
FaeI	CATG	3 cut(s)	81, 152, 322
FaiI	YATR	8 cut(s)	79, 131, 133, 150, 266, 291, 320, 384
FatI	CATG	3 cut(s)	77, 148, 318
FauNDI	CATATG	1 cut(s)	131
FblI	GTMKAC	1 cut(s)	354
FspBI	CTAG	3 cut(s)	8, 203, 269
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	3 cut(s)	81, 152, 322
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	2 cut(s)	90, 338
HinfI	GANTC	2 cut(s)	110, 347
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	59, 114
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	1 cut(s)	359
HpyCH4III	ACNGT	2 cut(s)	32, 238
HpyCH4V	TGCA	3 cut(s)	135, 332, 394
Hsp92II	CATG	3 cut(s)	81, 152, 322
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	36, 81
LpnPI	CCDG	1 cut(s)	256
LweI	GCATC	2 cut(s)	128, 319
MaeI	CTAG	3 cut(s)	8, 203, 269
MaeIII	GTNAC	2 cut(s)	238, 362
MalI	GATC	2 cut(s)	38, 83
MboI	GATC	2 cut(s)	36, 81
MboII	GAAGA	1 cut(s)	335
MflI	RGATCY	2 cut(s)	36, 81
MluCI	AATT	1 cut(s)	46
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	2 cut(s)	111, 364
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	243
NdeI	CATATG	1 cut(s)	131
NdeII	GATC	2 cut(s)	36, 81
NlaIII	CATG	3 cut(s)	81, 152, 322
NlaIV	GGNNCC	2 cut(s)	83, 209
PfeI	GAWTC	1 cut(s)	347
PinAI	ACCGGT	1 cut(s)	242
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	83, 209
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	36, 81
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	353
Sau3AI	GATC	2 cut(s)	36, 81
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	119
SetI	ASST	4 cut(s)	9, 94, 204, 342
SfaNI	GCATC	2 cut(s)	128, 319
SfcI	CTRYAG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	225
SpeI	ACTAGT	1 cut(s)	268
Sse9I	AATT	1 cut(s)	46
SspMI	CTAG	3 cut(s)	8, 203, 269
TaaI	ACNGT	2 cut(s)	32, 238
TaqI	TCGA	1 cut(s)	354
TasI	AATT	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	347
TscAI	CASTG	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	3 cut(s)	8, 203, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.