Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0017640

Physical Location & Seq

Genomic Coordinates Reverse (-)

17294691 .. 17295386

Gene Structure 696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG206200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCCTCCACAATTTTCAGAAGCTTTCAAACCCACCCTTTTGTGTTCCATCCCACCACATTACTTAGAAGAAAGAATGTTCTTTTGTATTGCACAATGAGAAGTCAACAAACCCAGACAGCCACCCAAGTGAAAGTTTCTAACTTGAACCCGAATAAGAAGCTGGAGAATATCTCGAAGGACTATGAAGCAGTCATAGGTATCGAAACCCATGTCCAGCTATCTACTCAGACCAAGGCCTTTTGTAGTTGCCCTTATAATTACGGCTCTCAACCAAACACTAGTATTTGCCCCATTTGTATGGGTCTGCCTGGTGCTTTACCGATTTTGAACTTTAAGGTCATTGAGTCTGCTGTGAAAGTTGGGCTTGCACTCAATTGCAAATTGGCAATAAACTCGAAGTTTGATAGGAAACAATACTTTTACGCGGACCTTCCAAAGGGGTACCAAATATCCCAGTTTGATGTTCCAATTGCGACCGGTGGCTACATTGATTTGGATATTCCAGTAGAGTTTGGTGGTGGGCATAGGAAGTTTGGCATTACAAGAGTTCACATGGAAGAGGATGCAGGGAAGCTGATGCATTCAGACGATGGAAGTTACTCACAGGAAAGTACATTTCGCTTTGTACTTGCCATCAACATTTTTCTAGTTCATATAAAATACTGTTTGTTTCTTTTCTGCAGGTTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050567 GO:0070681 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

GatB_N GatB_Yqey

Protein Analysis

231

Amino Acids

26.07

Weight (kDa)

8.97

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatB_N	PF02934	65 - 202	1.2e-52	GatB/GatE catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04730
rosa_chinensis	RchiOBHm_Chr4g0395921
rosa_laevigata	RLG00000022853
rosa_roxburghii	Rroxscaffold_1G00041950 Rroxscaffold_1G00043970
rosa_rugosa	Rorug07G0205900
rosa_samantha	Rh4BG062700 Rh4CG069000 Rh7AG206700 Rh7BG206200 Rh7BG337300 Rh7DG213900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
Acc36I	ACCTGC	1 cut(s)	675
Acc65I	GGTACC	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	444
AccII	CGCG	1 cut(s)	428
AciI	CCGC	1 cut(s)	428
AfaI	GTAC	3 cut(s)	446, 616, 630
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgeI	ACCGGT	1 cut(s)	479
AgsI	TTSAA	3 cut(s)	29, 148, 331
AhlI	ACTAGT	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	310
AleI	CACNNNNGTG	1 cut(s)	128
AluBI	AGCT	4 cut(s)	24, 163, 220, 577
AluI	AGCT	4 cut(s)	24, 163, 220, 577
AoxI	GGCC	2 cut(s)	3, 237
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
AsiGI	ACCGGT	1 cut(s)	479
Asp718I	GGTACC	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	444
BccI	CCATC	3 cut(s)	57, 587, 644
BceAI	ACGGC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	378, 412
BciT130I	CCWGG	1 cut(s)	312
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	2 cut(s)	282, 650
BfmI	CTRYAG	1 cut(s)	682
BfuAI	ACCTGC	1 cut(s)	675
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	446
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	451
BmsI	GCATC	2 cut(s)	556, 570
BmuI	ACTGGG	1 cut(s)	451
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
BpmI	CTGGAG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	2 cut(s)	457, 506
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	49, 571
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	2 cut(s)	457, 506
Bsh1236I	CGCG	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	5, 239
BshNI	GGYRCC	1 cut(s)	444
BshTI	ACCGGT	1 cut(s)	479
BsiEI	CGRYCG	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	5, 239
Bsp143I	GATC	1 cut(s)	690
BspACI	CCGC	1 cut(s)	428
BspANI	GGCC	2 cut(s)	5, 239
BspCNI	CTCAG	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	428
BspLI	GGNNCC	1 cut(s)	446
BspMAI	CTGCAG	1 cut(s)	686
BspMI	ACCTGC	1 cut(s)	675
BspT107I	GGYRCC	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	479
BsrI	ACTGG	2 cut(s)	457, 506
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	690
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	668
Bst6I	CTCTTC	1 cut(s)	555
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	2 cut(s)	65, 228
BstENI	CCTNNNNNAGG	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	49, 571
BstFNI	CGCG	1 cut(s)	428
BstKTI	GATC	1 cut(s)	693
BstMBI	GATC	1 cut(s)	690
BstMCI	CGRYCG	1 cut(s)	480
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	682
BstUI	CGCG	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	5, 239
BtsCI	GGATG	2 cut(s)	49, 571
BveI	ACCTGC	1 cut(s)	675
Cac8I	GCNNGC	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	3 cut(s)	445, 615, 629
CspAI	ACCGGT	1 cut(s)	479
CviAII	CATG	2 cut(s)	212, 556
CviQI	GTAC	3 cut(s)	445, 615, 629
DdeI	CTNAG	2 cut(s)	65, 228
DpnI	GATC	1 cut(s)	692
DpnII	GATC	1 cut(s)	690
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco130I	CCWWGG	1 cut(s)	234
Eco147I	AGGCCT	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	430
EcoNI	CCTNNNNNAGG	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	2 cut(s)	215, 559
FaiI	YATR	9 cut(s)	186, 197, 213, 258, 302, 528, 557, 657, 659
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FatI	CATG	2 cut(s)	211, 555
FokI	GGATG	2 cut(s)	36, 578
FspBI	CTAG	2 cut(s)	282, 650
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	5, 239
HapII	CCGG	1 cut(s)	480
Hin1II	CATG	2 cut(s)	215, 559
HincII	GTYRAC	1 cut(s)	107
HindII	GTYRAC	1 cut(s)	107
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	1 cut(s)	347
HpaII	CCGG	1 cut(s)	480
Hpy166II	GTNNAC	2 cut(s)	107, 553
Hpy188I	TCNGA	3 cut(s)	20, 231, 589
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	2 cut(s)	107, 553
HpyAV	CCTTC	2 cut(s)	172, 443
HpyCH4III	ACNGT	1 cut(s)	668
HpyCH4V	TGCA	6 cut(s)	93, 371, 381, 569, 583, 684
HpyF3I	CTNAG	2 cut(s)	65, 228
Hsp92II	CATG	2 cut(s)	215, 559
KpnI	GGTACC	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	690
LweI	GCATC	2 cut(s)	556, 570
MaeI	CTAG	2 cut(s)	282, 650
MaeIII	GTNAC	1 cut(s)	599
MalI	GATC	1 cut(s)	692
MboI	GATC	1 cut(s)	690
MboII	GAAGA	2 cut(s)	81, 572
MfeI	CAATTG	2 cut(s)	376, 471
MluCI	AATT	5 cut(s)	12, 259, 376, 383, 471
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	2 cut(s)	16, 556
Mph1103I	ATGCAT	1 cut(s)	585
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	128, 299
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	312
MunI	CAATTG	2 cut(s)	376, 471
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	428
NdeII	GATC	1 cut(s)	690
NlaIII	CATG	2 cut(s)	215, 559
NlaIV	GGNNCC	1 cut(s)	446
NsiI	ATGCAT	1 cut(s)	585
OliI	CACNNNNGTG	1 cut(s)	128
PceI	AGGCCT	1 cut(s)	239
PctI	GAATGC	1 cut(s)	583
PinAI	ACCGGT	1 cut(s)	479
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PsiI	TTATAA	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	446
PspPI	GGNCC	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	686
RsaI	GTAC	3 cut(s)	446, 616, 630
RsaNI	GTAC	3 cut(s)	445, 615, 629
RseI	CAYNNNNRTG	2 cut(s)	128, 299
SaqAI	TTAA	1 cut(s)	336
Sau3AI	GATC	1 cut(s)	690
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	8 cut(s)	26, 165, 202, 222, 342, 435, 579, 689
SfaNI	GCATC	2 cut(s)	556, 570
SfcI	CTRYAG	1 cut(s)	682
SinI	GGWCC	1 cut(s)	430
SmiMI	CAYNNNNRTG	2 cut(s)	128, 299
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	5 cut(s)	12, 259, 376, 383, 471
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	1 cut(s)	428
SspMI	CTAG	2 cut(s)	282, 650
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	668
TaqI	TCGA	3 cut(s)	176, 204, 398
TasI	AATT	5 cut(s)	12, 259, 376, 383, 471
TatI	WGTACW	2 cut(s)	614, 628
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TspDTI	ATGAA	2 cut(s)	201, 644
VpaK11BI	GGWCC	1 cut(s)	430
XagI	CCTNNNNNAGG	1 cut(s)	437
XspI	CTAG	2 cut(s)	282, 650
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.