FvH4_4g05260

Golgin subfamily A member 6-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
4503759 .. 4505249
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05260.t1

Sequence Viewer

Length: 741 bp
ATGGGTGGAACTGAAAGCAAGAATAAGAAGAGGAGTAGTTCAAGGGAGAAAGATTACGGAAGAGGGGTGCTGAGAGGAAAAGTGAGGCAAATTCAAGAGGAAATGAGTGAGATGGTGTGTGAGAGGAAGAAAGAGAGCGCAGCATATGAGAGGGACATGATGGTGTTTGCGTTCAAGGAGGCTGAGTGGAAGCAAGAGAAGAAGAAGATGAGGGAGGAGGTGAAGATGTTGAGGAACATGGTGGAAGAGAAAGAGGAGAAGATTAGGGTAATTGAGGGGAGCAAGAACAGTGCTGGTGGTCATGAGAATAGTGAAGAAGACTGGGAAGTGGTGCTGGGGAGTAGTTGTGCAGCTACTTTGTTGGTTGAGCAAATGAGGGAGGAAAGAGCAAGGAGAGATGAGACTGTGGAGAAGTGGAAGCATCTCTATCTGGCTATTAAGATGGAGCTTGATGATCTCATCCAGAGAACTGACTGTGGAAATGGACTGTATTGGAAGGCAGAAGAAGAGGACATTATTTTGGAAGAGCTAAAGGGACAACTGAAAGCCAAAGAAGAGATCATTGCAAGCCTAAACTCAAAGATAGCTACGATGGAGAATGAGCAATACAAGAGGGAGCGAGAGATTGACATATTGAGGCAGAGCTTGAGAATCATGAGCTGCAAGAAGACAGTAGTGCAGGTCGCCAAGAATGTCTCCAAGGATTCACAGCTTGTGAAAAAGCACACTAGGAAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

28.84

Weight (kDa)

8.49

Isoelectric Point (pI)

59.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23930 AT4G13540
fragaria_vesca FvH4_4g05260 FvH4_4g05260
malus_domestica MD13G1226700.v1.1
prunus_persica Prupe.1G054100_v2.0.a1
pyrus_communis pycom13g19980 pycom16g19380
rosa_chinensis RchiOBHm_Chr4g0396171
rosa_laevigata RLG00000009563
rosa_multiflora Rmu_sc0006325.1_g000042
rosa_roxburghii Rroxscaffold_5G00341020
rosa_rugosa Rorug03G0351100
rosa_samantha Rh4BG065400 Rh4CG072100 Rh4DG062200
rosa_wichuraiana Rw4G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 670
AcsI RAATTY 1 cut(s) 90
AgsI TTSAA 3 cut(s) 42, 95, 175
AluBI AGCT 7 cut(s) 353, 448, 529, 587, 645, 660, 712
AluI AGCT 7 cut(s) 353, 448, 529, 587, 645, 660, 712
Alw26I GTCTC 2 cut(s) 395, 700
ApeKI GCWGC 3 cut(s) 140, 350, 660
ApoI RAATTY 1 cut(s) 90
AspLEI GCGC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 232
BbsI GAAGAC 2 cut(s) 324, 674
BbvI GCAGC 3 cut(s) 152, 362, 647
BccI CCATC 4 cut(s) 106, 154, 436, 586
BcoDI GTCTC 2 cut(s) 395, 700
BfaI CTAG 1 cut(s) 729
BfuAI ACCTGC 1 cut(s) 670
BisI GCNGC 3 cut(s) 141, 351, 661
BlsI GCNGC 3 cut(s) 142, 352, 662
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 1 cut(s) 430
BmuI ACTGGG 1 cut(s) 331
BpiI GAAGAC 2 cut(s) 324, 674
BpuEI CTTGAG 1 cut(s) 667
BsaJI CCNNGG 1 cut(s) 699
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 331, 361
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 561
BseDI CCNNGG 1 cut(s) 699
BseGI GGATG 1 cut(s) 459
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 2 cut(s) 62, 174
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 3 cut(s) 46, 230, 269
BseXI GCAGC 3 cut(s) 152, 362, 647
BseYI CCCAGC 1 cut(s) 334
BsgI GTGCAG 2 cut(s) 369, 698
BslFI GGGAC 2 cut(s) 167, 549
BsmAI GTCTC 2 cut(s) 395, 700
BsmFI GGGAC 2 cut(s) 167, 549
Bsp143I GATC 2 cut(s) 454, 558
BspCNI CTCAG 2 cut(s) 63, 175
BspHI TCATGA 2 cut(s) 301, 654
BspMI ACCTGC 1 cut(s) 670
BspQI GCTCTTC 1 cut(s) 519
BsrDI GCAATG 1 cut(s) 561
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 699
BssMI GATC 2 cut(s) 454, 558
BssT1I CCWWGG 1 cut(s) 699
Bst4CI ACNGT 6 cut(s) 290, 406, 476, 489, 673, 738
Bst6I CTCTTC 6 cut(s) 23, 55, 240, 501, 519, 549
BstC8I GCNNGC 1 cut(s) 568
BstDEI CTNAG 2 cut(s) 71, 183
BstF5I GGATG 1 cut(s) 459
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 2 cut(s) 457, 561
BstMAI GTCTC 2 cut(s) 395, 700
BstMBI GATC 2 cut(s) 454, 558
BstV1I GCAGC 3 cut(s) 152, 362, 647
BstV2I GAAGAC 2 cut(s) 324, 674
BtsCI GGATG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 295
BveI ACCTGC 1 cut(s) 670
Cac8I GCNNGC 1 cut(s) 568
CciI TCATGA 2 cut(s) 301, 654
CfoI GCGC 1 cut(s) 140
CviAII CATG 4 cut(s) 157, 238, 302, 655
DdeI CTNAG 2 cut(s) 71, 183
DpnI GATC 2 cut(s) 456, 560
DpnII GATC 2 cut(s) 454, 558
Eam1104I CTCTTC 6 cut(s) 23, 55, 240, 501, 519, 549
EarI CTCTTC 6 cut(s) 23, 55, 240, 501, 519, 549
Eco130I CCWWGG 1 cut(s) 699
EcoT14I CCWWGG 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 699
FaeI CATG 4 cut(s) 160, 241, 305, 658
FaiI YATR 7 cut(s) 145, 147, 158, 239, 303, 632, 656
FaqI GGGAC 2 cut(s) 167, 549
FatI CATG 4 cut(s) 156, 237, 301, 654
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 3 cut(s) 141, 351, 661
FokI GGATG 1 cut(s) 446
Fsp4HI GCNGC 3 cut(s) 141, 351, 661
FspBI CTAG 1 cut(s) 729
GlaI GCGC 1 cut(s) 139
GluI GCNGC 3 cut(s) 141, 351, 661
GsaI CCCAGC 1 cut(s) 338
HhaI GCGC 1 cut(s) 140
Hin1II CATG 4 cut(s) 160, 241, 305, 658
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 2 cut(s) 651, 704
HphI GGTGA 1 cut(s) 232
Hpy188III TCNNGA 4 cut(s) 95, 302, 463, 655
HpyAV CCTTC 1 cut(s) 490
HpyCH4III ACNGT 6 cut(s) 290, 406, 476, 489, 673, 738
HpyCH4V TGCA 4 cut(s) 350, 566, 663, 679
HpyF3I CTNAG 2 cut(s) 71, 183
Hsp92II CATG 4 cut(s) 160, 241, 305, 658
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 454, 558
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 3 cut(s) 279, 445, 616
LpnPI CCDG 6 cut(s) 279, 307, 320, 416, 476, 665
Lsp1109I GCAGC 3 cut(s) 152, 362, 647
LweI GCATC 1 cut(s) 430
MaeI CTAG 1 cut(s) 729
MalI GATC 2 cut(s) 456, 560
MboI GATC 2 cut(s) 454, 558
MluCI AATT 2 cut(s) 90, 270
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 1 cut(s) 161
NdeI CATATG 1 cut(s) 145
NdeII GATC 2 cut(s) 454, 558
NlaIII CATG 4 cut(s) 160, 241, 305, 658
PagI TCATGA 2 cut(s) 301, 654
PciSI GCTCTTC 1 cut(s) 519
PfeI GAWTC 2 cut(s) 651, 704
PkrI GCNGC 3 cut(s) 142, 352, 662
PspFI CCCAGC 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 161
SapI GCTCTTC 1 cut(s) 519
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 3 cut(s) 141, 351, 661
Sau3AI GATC 2 cut(s) 454, 558
SetI ASST 9 cut(s) 222, 355, 450, 531, 589, 647, 662, 684, 714
SfaNI GCATC 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
Sse9I AATT 2 cut(s) 90, 270
SspMI CTAG 1 cut(s) 729
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 6 cut(s) 290, 406, 476, 489, 673, 738
TasI AATT 2 cut(s) 90, 270
TfiI GAWTC 2 cut(s) 651, 704
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 1 cut(s) 295
TseI GCWGC 3 cut(s) 140, 350, 660
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 1 cut(s) 295
XapI RAATTY 1 cut(s) 90
XspI CTAG 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.