Rh4CG072100

Golgin subfamily A member 6-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
13309209 .. 13310223
1015 bp
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UTR
Exon/CDS
Intron
Rh4CG072100.1

Sequence Viewer

Length: 738 bp
ATGGGTGGAACTGAAAGCAAGAATAAGAAGAGGAGTAGTTCAAGAGAGAAAGATTGTGGAAGAGGGGTAGTATTGAGAGGCAAGGTTAGGCAAATCCAAGAGGAAATGAGTGAGATGGTGTGTGAGAGAAAGAAAGAGAGTGCAGCATATGAGAGGGACATGATGGTGTTTGCGTTCAAGGAGGCTGAATGGAAGCAAGAGAAGAAGAAGATGAGGGAGGAGGTGAAGATGTTGAGGAACATGGTGGAAGAGAAAGAGGAGAGGATTAGGGTAATTGAAGGTAGTAAGAAGAGTAGTGGTCATGAGAATGCTGAAGGCTGGGAAGTGGTGTTGGGGAGTAGTTGTGCTGCTAATTTGTTGGTTGAGCAAATGAAGGAGGAGAGAGCAAGGAGAGATGAGACTGTGGAGAAGTGGAAGCAACTTTATCTGGCTATCAAGATGGAGCTTGATGATCTCATCCAGAGGACTCATTGTGGAACTGGACTATATTGGAGGGCAGAAGAAGAAGACATTATTGTGGAAGAGCTAAAGAGACAACTGAAAGCCAAAGAAGAGATCATTACAGGCCTAAACTCTAAGATAGTTGCAATGGAGAAAGAGCAATACAAGATGGAGCGAGAGATTGACATATTGAGGCAGAGCTTGAGAATCATGAGCTCCAAGAAGACAGTAGTGCAGGTCGCCAAGAATGTCTCCAAGGATTCACAGCTCGTGAAAAAGCACGCTAGGAAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

28.71

Weight (kDa)

9.16

Isoelectric Point (pI)

59.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23930 AT4G13540
fragaria_vesca FvH4_4g05260 FvH4_4g05260
malus_domestica MD13G1226700.v1.1
prunus_persica Prupe.1G054100_v2.0.a1
pyrus_communis pycom13g19980 pycom16g19380
rosa_chinensis RchiOBHm_Chr4g0396171
rosa_laevigata RLG00000009563
rosa_multiflora Rmu_sc0006325.1_g000042
rosa_roxburghii Rroxscaffold_5G00341020
rosa_rugosa Rorug03G0351100
rosa_samantha Rh4BG065400 Rh4CG072100 Rh4DG062200
rosa_wichuraiana Rw4G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 667
AcuI CTGAAG 1 cut(s) 333
AgsI TTSAA 3 cut(s) 42, 178, 278
AluBI AGCT 5 cut(s) 445, 526, 642, 657, 709
AluI AGCT 5 cut(s) 445, 526, 642, 657, 709
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 3 cut(s) 392, 526, 697
AoxI GGCC 1 cut(s) 565
ApeKI GCWGC 2 cut(s) 143, 347
AsuHPI GGTGA 1 cut(s) 235
BanII GRGCYC 1 cut(s) 659
BauI CACGAG 1 cut(s) 710
BbsI GAAGAC 2 cut(s) 513, 671
Bbv12I GWGCWC 1 cut(s) 659
BbvI GCAGC 2 cut(s) 155, 334
BccI CCATC 4 cut(s) 109, 157, 433, 604
BcoDI GTCTC 3 cut(s) 392, 526, 697
BfaI CTAG 1 cut(s) 726
BfuAI ACCTGC 1 cut(s) 667
BisI GCNGC 2 cut(s) 144, 348
BlsI GCNGC 2 cut(s) 145, 349
BpiI GAAGAC 2 cut(s) 513, 671
BpuEI CTTGAG 1 cut(s) 664
BsaJI CCNNGG 1 cut(s) 696
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bse1I ACTGG 1 cut(s) 484
Bse3DI GCAATG 1 cut(s) 594
BseDI CCNNGG 1 cut(s) 696
BseGI GGATG 1 cut(s) 456
BseMI GCAATG 1 cut(s) 594
BseNI ACTGG 1 cut(s) 484
BseRI GAGGAG 4 cut(s) 46, 233, 272, 392
BseXI GCAGC 2 cut(s) 155, 334
BseYI CCCAGC 1 cut(s) 318
BsgI GTGCAG 2 cut(s) 162, 695
BshFI GGCC 1 cut(s) 567
BsiHKAI GWGCWC 1 cut(s) 659
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 3 cut(s) 392, 526, 697
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 1 cut(s) 567
Bsp1286I GDGCHC 1 cut(s) 659
Bsp143I GATC 2 cut(s) 451, 555
BspANI GGCC 1 cut(s) 567
BspHI TCATGA 2 cut(s) 301, 651
BspMI ACCTGC 1 cut(s) 667
BspQI GCTCTTC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 594
BsrI ACTGG 1 cut(s) 484
BssECI CCNNGG 1 cut(s) 696
BssMI GATC 2 cut(s) 451, 555
BssSI CACGAG 1 cut(s) 710
BssT1I CCWWGG 1 cut(s) 696
Bst2BI CACGAG 1 cut(s) 710
Bst4CI ACNGT 2 cut(s) 403, 670
Bst6I CTCTTC 6 cut(s) 23, 55, 243, 284, 516, 546
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 1 cut(s) 576
BstF5I GGATG 1 cut(s) 456
BstKTI GATC 2 cut(s) 454, 558
BstMAI GTCTC 3 cut(s) 392, 526, 697
BstMBI GATC 2 cut(s) 451, 555
BstV1I GCAGC 2 cut(s) 155, 334
BstV2I GAAGAC 2 cut(s) 513, 671
BsuRI GGCC 1 cut(s) 567
BtsCI GGATG 1 cut(s) 456
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 1 cut(s) 723
CciI TCATGA 2 cut(s) 301, 651
CviAII CATG 4 cut(s) 160, 241, 302, 652
DdeI CTNAG 1 cut(s) 576
DpnI GATC 2 cut(s) 453, 557
DpnII GATC 2 cut(s) 451, 555
Eam1104I CTCTTC 6 cut(s) 23, 55, 243, 284, 516, 546
EarI CTCTTC 6 cut(s) 23, 55, 243, 284, 516, 546
Ecl136II GAGCTC 1 cut(s) 657
Eco130I CCWWGG 1 cut(s) 696
Eco147I AGGCCT 1 cut(s) 567
Eco24I GRGCYC 1 cut(s) 659
Eco53kI GAGCTC 1 cut(s) 657
Eco57I CTGAAG 1 cut(s) 333
EcoICRI GAGCTC 1 cut(s) 657
EcoT14I CCWWGG 1 cut(s) 696
EcoT38I GRGCYC 1 cut(s) 659
ErhI CCWWGG 1 cut(s) 696
FaeI CATG 4 cut(s) 163, 244, 305, 655
FaiI YATR 8 cut(s) 148, 150, 161, 242, 303, 487, 629, 653
FaqI GGGAC 1 cut(s) 170
FatI CATG 4 cut(s) 159, 240, 301, 651
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 144, 348
FokI GGATG 1 cut(s) 443
FriOI GRGCYC 1 cut(s) 659
Fsp4HI GCNGC 2 cut(s) 144, 348
FspBI CTAG 1 cut(s) 726
GluI GCNGC 2 cut(s) 144, 348
GsaI CCCAGC 1 cut(s) 322
HaeIII GGCC 1 cut(s) 567
Hin1II CATG 4 cut(s) 163, 244, 305, 655
HinfI GANTC 3 cut(s) 466, 648, 701
HphI GGTGA 1 cut(s) 235
Hpy188III TCNNGA 6 cut(s) 42, 302, 436, 460, 652, 712
HpyAV CCTTC 3 cut(s) 272, 308, 367
HpyCH4III ACNGT 2 cut(s) 403, 670
HpyCH4V TGCA 3 cut(s) 143, 587, 676
HpyF3I CTNAG 1 cut(s) 576
Hsp92II CATG 4 cut(s) 163, 244, 305, 655
Kzo9I GATC 2 cut(s) 451, 555
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 3 cut(s) 442, 613, 662
LpnPI CCDG 6 cut(s) 304, 413, 465, 473, 549, 662
Lsp1109I GCAGC 2 cut(s) 155, 334
MaeI CTAG 1 cut(s) 726
MalI GATC 2 cut(s) 453, 557
MboI GATC 2 cut(s) 451, 555
MhlI GDGCHC 1 cut(s) 659
MluCI AATT 3 cut(s) 273, 352, 731
MlyI GAGTC 1 cut(s) 460
MslI CAYNNNNRTG 3 cut(s) 164, 306, 515
Mva1269I GAATGC 1 cut(s) 313
NdeI CATATG 1 cut(s) 148
NdeII GATC 2 cut(s) 451, 555
NlaIII CATG 4 cut(s) 163, 244, 305, 655
PagI TCATGA 2 cut(s) 301, 651
PceI AGGCCT 1 cut(s) 567
PciSI GCTCTTC 1 cut(s) 516
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 648, 701
PkrI GCNGC 2 cut(s) 145, 349
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
Psp124BI GAGCTC 1 cut(s) 659
PspFI CCCAGC 1 cut(s) 318
RseI CAYNNNNRTG 3 cut(s) 164, 306, 515
SacI GAGCTC 1 cut(s) 659
SapI GCTCTTC 1 cut(s) 516
SatI GCNGC 2 cut(s) 144, 348
Sau3AI GATC 2 cut(s) 451, 555
SchI GAGTC 1 cut(s) 460
SduI GDGCHC 1 cut(s) 659
SetI ASST 9 cut(s) 87, 225, 283, 447, 528, 644, 659, 681, 711
SmiMI CAYNNNNRTG 3 cut(s) 164, 306, 515
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
Sse9I AATT 3 cut(s) 273, 352, 731
SseBI AGGCCT 1 cut(s) 567
SspMI CTAG 1 cut(s) 726
SstI GAGCTC 1 cut(s) 659
StuI AGGCCT 1 cut(s) 567
StyI CCWWGG 1 cut(s) 696
TaaI ACNGT 2 cut(s) 403, 670
TasI AATT 3 cut(s) 273, 352, 731
TfiI GAWTC 2 cut(s) 648, 701
TseI GCWGC 2 cut(s) 143, 347
TspDTI ATGAA 1 cut(s) 386
XspI CTAG 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.