pycom13g19980

Golgin subfamily A member 6-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
15910827 .. 15912128
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g19980.1

Sequence Viewer

Length: 753 bp
ATGGGCGGGATTGCGAGCAAGAAGAGGGGTAATTTAAGTGAGAGAAATGTTGGTGGGTTGAGAGATAAGGTGAGGAGTATTCAAGAGGAGATGAGTGGGATGGTGTGTGAGAGGAAGAAGGAGAGTGCGGCATATGAGAGGGACATGATGGTGTTCGCATTCAAGGAGGCTGAGTGGAAGCAGGAGAAGAAGAAGATGAGGGAGGAGGTGAAGATGCTGAGGAAGGTTGTGGAAGAGAAGGAGGAAAGGATTAGGGGAATGGAGGATTGTGGTGGGGTTGTGGTGATGGGAGGTGGGAATGATAATAAGAGTGGTGATGGTGGTGGTGGGGAGAATAATAGTAAAGAGTGGGAAGTGTTGTTGGGGAGTGTTTTTCTGGCTGAGCAAATGAGGGAGGAGAGAGCAAGGAGGGATGAGACCGTGGAGAAGTGGAAGCAGCTTTATCTGGCTATTAAGGTGGAGCTTGATGATCTCATTCAGAGAACACATTGTGGAAATGGGCTGTATTGGAAGGCAGAGGAAGAAGACATAGTAGAAGAGCTAAAGAGAGAGCTCAAAGCCAAGGAAGAAATGATTGCATCTCTAAAATCCAAAATAGCTTCAATGGAGCATGAACATTTCAAGAAGGAAAGAGAGATTGACATATTAAGGCAGAGCTTACGAATCATCAGCTGCAAGAAGACAATGCACGCCCCTAAGAATGTTTCTAGAGATTCACAGCTCGTGAAACTGAAACAGGCCAGAAAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

28.91

Weight (kDa)

8.85

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23930 AT4G13540
fragaria_vesca FvH4_4g05260 FvH4_4g05260
malus_domestica MD13G1226700.v1.1
prunus_persica Prupe.1G054100_v2.0.a1
pyrus_communis pycom13g19980 pycom16g19380
rosa_chinensis RchiOBHm_Chr4g0396171
rosa_laevigata RLG00000009563
rosa_multiflora Rmu_sc0006325.1_g000042
rosa_roxburghii Rroxscaffold_5G00341020
rosa_rugosa Rorug03G0351100
rosa_samantha Rh4BG065400 Rh4CG072100 Rh4DG062200
rosa_wichuraiana Rw4G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 6, 128
AdeI CACNNNGTG 1 cut(s) 491
AgsI TTSAA 4 cut(s) 83, 163, 603, 622
AluBI AGCT 8 cut(s) 439, 463, 541, 553, 599, 657, 672, 721
AluI AGCT 8 cut(s) 439, 463, 541, 553, 599, 657, 672, 721
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 1 cut(s) 410
AoxI GGCC 1 cut(s) 738
ApeKI GCWGC 2 cut(s) 436, 672
AsuHPI GGTGA 4 cut(s) 82, 220, 295, 326
BanII GRGCYC 1 cut(s) 555
BauI CACGAG 1 cut(s) 722
BbsI GAAGAC 2 cut(s) 531, 686
Bbv12I GWGCWC 1 cut(s) 555
BbvCI CCTCAGC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 448, 659
BccI CCATC 4 cut(s) 94, 142, 280, 311
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 1 cut(s) 708
BisI GCNGC 3 cut(s) 129, 437, 673
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 3 cut(s) 130, 438, 674
BmsI GCATC 2 cut(s) 204, 587
BpiI GAAGAC 2 cut(s) 531, 686
Bpu10I CCTNAGC 1 cut(s) 218
Bpu1102I GCTNAGC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 420, 561
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
BseDI CCNNGG 2 cut(s) 420, 561
BseGI GGATG 2 cut(s) 105, 418
BseMII CTCAG 3 cut(s) 162, 209, 372
BseRI GAGGAG 4 cut(s) 88, 101, 218, 410
BseXI GCAGC 2 cut(s) 448, 659
BshFI GGCC 1 cut(s) 740
BsiHKAI GWGCWC 1 cut(s) 555
BslFI GGGAC 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 1 cut(s) 740
Bso31I GGTCTC 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 1 cut(s) 469
Bsp1720I GCTNAGC 1 cut(s) 381
BspACI CCGC 2 cut(s) 6, 128
BspANI GGCC 1 cut(s) 740
BspCNI CTCAG 3 cut(s) 163, 210, 373
BspQI GCTCTTC 1 cut(s) 531
BspTNI GGTCTC 1 cut(s) 410
BssECI CCNNGG 2 cut(s) 420, 561
BssMI GATC 1 cut(s) 469
BssSI CACGAG 1 cut(s) 722
BssT1I CCWWGG 1 cut(s) 561
Bst2BI CACGAG 1 cut(s) 722
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 3 cut(s) 17, 228, 531
BstC8I GCNNGC 2 cut(s) 16, 690
BstDEI CTNAG 4 cut(s) 171, 218, 381, 696
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 2 cut(s) 105, 418
BstKTI GATC 1 cut(s) 472
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 1 cut(s) 469
BstV1I GCAGC 2 cut(s) 448, 659
BstV2I GAAGAC 2 cut(s) 531, 686
BsuRI GGCC 1 cut(s) 740
BtgI CCRYGG 1 cut(s) 420
BtsCI GGATG 2 cut(s) 105, 418
Cac8I GCNNGC 2 cut(s) 16, 690
CviAII CATG 2 cut(s) 145, 611
DdeI CTNAG 4 cut(s) 171, 218, 381, 696
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
DraIII CACNNNGTG 1 cut(s) 491
Eam1104I CTCTTC 3 cut(s) 17, 228, 531
EarI CTCTTC 3 cut(s) 17, 228, 531
Ecl136II GAGCTC 1 cut(s) 553
Eco130I CCWWGG 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 410
Eco53kI GAGCTC 1 cut(s) 553
EcoICRI GAGCTC 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 561
EcoT38I GRGCYC 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 561
FaeI CATG 2 cut(s) 148, 614
FaiI YATR 6 cut(s) 133, 135, 146, 530, 612, 644
FaqI GGGAC 1 cut(s) 155
FatI CATG 2 cut(s) 144, 610
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 3 cut(s) 129, 437, 673
FokI GGATG 2 cut(s) 112, 425
FriOI GRGCYC 1 cut(s) 555
Fsp4HI GCNGC 3 cut(s) 129, 437, 673
FspBI CTAG 1 cut(s) 708
GluI GCNGC 3 cut(s) 129, 437, 673
HaeIII GGCC 1 cut(s) 740
Hin1II CATG 2 cut(s) 148, 614
HinfI GANTC 2 cut(s) 663, 713
HphI GGTGA 4 cut(s) 82, 220, 295, 326
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 4 cut(s) 83, 622, 708, 724
HpyAV CCTTC 5 cut(s) 112, 217, 232, 505, 619
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4V TGCA 3 cut(s) 578, 675, 688
HpyF3I CTNAG 4 cut(s) 171, 218, 381, 696
Hsp92II CATG 2 cut(s) 148, 614
Kzo9I GATC 1 cut(s) 469
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 2 cut(s) 460, 607
LpnPI CCDG 4 cut(s) 167, 362, 431, 722
Lsp1109I GCAGC 2 cut(s) 448, 659
LweI GCATC 2 cut(s) 204, 587
MaeI CTAG 1 cut(s) 708
MalI GATC 1 cut(s) 471
MboI GATC 1 cut(s) 469
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 2 cut(s) 31, 746
MseI TTAA 3 cut(s) 35, 453, 647
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 672
Mva1269I GAATGC 1 cut(s) 158
NdeI CATATG 1 cut(s) 133
NdeII GATC 1 cut(s) 469
NlaIII CATG 2 cut(s) 148, 614
PciSI GCTCTTC 1 cut(s) 531
PctI GAATGC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 663, 713
PkrI GCNGC 3 cut(s) 130, 438, 674
Psp124BI GAGCTC 1 cut(s) 555
PvuII CAGCTG 1 cut(s) 672
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 555
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 3 cut(s) 35, 453, 647
SatI GCNGC 3 cut(s) 129, 437, 673
Sau3AI GATC 1 cut(s) 469
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 2 cut(s) 204, 587
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 2 cut(s) 31, 746
SsiI CCGC 2 cut(s) 6, 128
SspMI CTAG 1 cut(s) 708
SstI GAGCTC 1 cut(s) 555
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 1 cut(s) 421
TasI AATT 2 cut(s) 31, 746
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 2 cut(s) 663, 713
Tru1I TTAA 3 cut(s) 35, 453, 647
Tru9I TTAA 3 cut(s) 35, 453, 647
TseI GCWGC 2 cut(s) 436, 672
TspDTI ATGAA 1 cut(s) 627
XbaI TCTAGA 1 cut(s) 707
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.