Rorug03G0351100

Golgin subfamily A member 6-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014006
Physical Location & Seq
Forward (+)
42912228 .. 42915359
3132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0351100.1

Sequence Viewer

Length: 507 bp
ATGGGATGCTCCAGAGTGTGGGACACTCCGACCCGAGCCTGGGAGGCTCCCTTCTCGTATGGTGATAACTTCTTCCCCATACTTTTTCGTGACTTGACTAGCGGGGCTAGTCCGTTATTTTCGGGTGACTCTGCCGAATTTTCGGTAGAGTTATTCCTAAGGTGGGCCCCACAGGGCCACCTCGGAATTCAGGGTGAAATTCGGGGCGGTCCGTCTCAAGTGCAGATCATTGAAAATGCTCAGTGGATTAGAAATAAGGCAATTTTGTTGACCCATTTCTCTTCCCGCTACCATTTAGAGGGCAACTTCCATCTCCAGAAGAGTCGCTGCTCTGCTTGTGCATACCCAGCTGTCCGCACCAGGAAATTCAATTGGAGTGTGAAGGCCATCAGGAGGAAGACCACCGGGACTGGAAGGATGTGGTATCTGTGGAATGTCCCACGCAGGTTTAAGAGTGGTTTCAGGGAAGGTGCTGATCCTTTTAGTTTTATACTCCTTGATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

19.29

Weight (kDa)

10.02

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37e PF01907 102 - 129 8.5e-10 Ribosomal protein L37e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23930 AT4G13540
fragaria_vesca FvH4_4g05260 FvH4_4g05260
malus_domestica MD13G1226700.v1.1
prunus_persica Prupe.1G054100_v2.0.a1
pyrus_communis pycom13g19980 pycom16g19380
rosa_chinensis RchiOBHm_Chr4g0396171
rosa_laevigata RLG00000009563
rosa_multiflora Rmu_sc0006325.1_g000042
rosa_roxburghii Rroxscaffold_5G00341020
rosa_rugosa Rorug03G0351100
rosa_samantha Rh4BG065400 Rh4CG072100 Rh4DG062200
rosa_wichuraiana Rw4G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 435
AccB7I CCANNNNNTGG 1 cut(s) 18
AciI CCGC 4 cut(s) 102, 207, 286, 355
AclWI GGATC 1 cut(s) 470
AcsI RAATTY 4 cut(s) 137, 186, 198, 365
AfiI CCNNNNNNNGG 6 cut(s) 18, 39, 40, 163, 298, 393
AgsI TTSAA 2 cut(s) 233, 370
AjnI CCWGG 2 cut(s) 38, 359
AluBI AGCT 1 cut(s) 350
AluI AGCT 1 cut(s) 350
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 470
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 3 cut(s) 165, 175, 384
ApaI GGGCCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 327
ApoI RAATTY 4 cut(s) 137, 186, 198, 365
AspS9I GGNCC 4 cut(s) 165, 166, 175, 209
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 3 cut(s) 74, 137, 206
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 209
AxyI CCTNAGG 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 404
BbvI GCAGC 1 cut(s) 314
BccI CCATC 2 cut(s) 318, 395
BciT130I CCWGG 2 cut(s) 40, 361
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 2 cut(s) 99, 108
BfuAI ACCTGC 1 cut(s) 435
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
Bme1390I CCNGG 3 cut(s) 40, 361, 406
Bme18I GGWCC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 4 cut(s) 165, 166, 175, 209
BmiI GGNNCC 3 cut(s) 48, 167, 168
BmrFI CCNGG 3 cut(s) 40, 361, 406
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 406
BsaJI CCNNGG 2 cut(s) 39, 181
Bsc4I CCNNNNNNNGG 6 cut(s) 18, 39, 40, 163, 298, 393
Bse1I ACTGG 1 cut(s) 415
Bse21I CCTNAGG 1 cut(s) 158
BseBI CCWGG 2 cut(s) 40, 361
BseDI CCNNGG 2 cut(s) 39, 181
BseGI GGATG 2 cut(s) 11, 423
BseLI CCNNNNNNNGG 6 cut(s) 18, 39, 40, 163, 298, 393
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 415
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 1 cut(s) 314
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 242
BshFI GGCC 3 cut(s) 167, 177, 386
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 1 cut(s) 405
BslFI GGGAC 3 cut(s) 35, 421, 422
BslI CCNNNNNNNGG 6 cut(s) 18, 39, 40, 163, 298, 393
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 3 cut(s) 35, 421, 422
BsnI GGCC 3 cut(s) 167, 177, 386
BsoBI CYCGRG 1 cut(s) 33
Bsp120I GGGCCC 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 2 cut(s) 225, 475
BspACI CCGC 4 cut(s) 102, 207, 286, 355
BspANI GGCC 3 cut(s) 167, 177, 386
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 3 cut(s) 48, 167, 168
BspMI ACCTGC 1 cut(s) 435
BspPI GGATC 1 cut(s) 470
BsrI ACTGG 1 cut(s) 415
BssECI CCNNGG 2 cut(s) 39, 181
BssMI GATC 2 cut(s) 225, 475
Bst2UI CCWGG 2 cut(s) 40, 361
Bst6I CTCTTC 2 cut(s) 286, 314
BstDEI CTNAG 2 cut(s) 158, 240
BstF5I GGATG 2 cut(s) 11, 423
BstKTI GATC 2 cut(s) 228, 478
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 2 cut(s) 225, 475
BstMWI GCNNNNNNNGC 2 cut(s) 44, 347
BstNI CCWGG 2 cut(s) 40, 361
BstSCI CCNGG 3 cut(s) 38, 359, 404
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 314
BstV2I GAAGAC 1 cut(s) 404
Bsu36I CCTNAGG 1 cut(s) 158
BsuRI GGCC 3 cut(s) 167, 177, 386
BtsCI GGATG 2 cut(s) 11, 423
BtsIMutI CAGTG 1 cut(s) 248
BveI ACCTGC 1 cut(s) 435
Cfr13I GGNCC 4 cut(s) 165, 166, 175, 209
CpoI CGGWCCG 1 cut(s) 209
CspI CGGWCCG 1 cut(s) 209
CviJI RGCY 7 cut(s) 38, 47, 107, 167, 177, 350, 386
CviKI_1 RGCY 7 cut(s) 38, 47, 107, 167, 177, 350, 386
DdeI CTNAG 2 cut(s) 158, 240
DpnI GATC 2 cut(s) 227, 477
DpnII GATC 2 cut(s) 225, 475
Eam1104I CTCTTC 2 cut(s) 286, 314
EarI CTCTTC 2 cut(s) 286, 314
Eco24I GRGCYC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 209
Eco81I CCTNAGG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 38, 359
EcoT38I GRGCYC 1 cut(s) 169
Esp3I CGTCTC 1 cut(s) 219
FaiI YATR 5 cut(s) 60, 80, 343, 491, 505
FaqI GGGAC 3 cut(s) 35, 421, 422
FauI CCCGC 2 cut(s) 95, 293
Fnu4HI GCNGC 1 cut(s) 328
FokI GGATG 2 cut(s) 18, 430
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 328
FspBI CTAG 2 cut(s) 99, 108
GluI GCNGC 1 cut(s) 328
GsaI CCCAGC 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 3 cut(s) 167, 177, 386
HapII CCGG 1 cut(s) 405
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 2 cut(s) 128, 322
HpaII CCGG 1 cut(s) 405
HphI GGTGA 3 cut(s) 74, 137, 206
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 2 cut(s) 30, 185
Hpy188III TCNNGA 4 cut(s) 12, 89, 316, 391
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 4 cut(s) 61, 376, 408, 461
HpyCH4V TGCA 2 cut(s) 223, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 347
HpyF3I CTNAG 2 cut(s) 158, 240
Kzo9I GATC 2 cut(s) 225, 475
LmnI GCTCC 2 cut(s) 14, 52
Lsp1109I GCAGC 1 cut(s) 314
MaeI CTAG 2 cut(s) 99, 108
MaeIII GTNAC 2 cut(s) 89, 125
MalI GATC 2 cut(s) 227, 477
MboI GATC 2 cut(s) 225, 475
MboII GAAGA 4 cut(s) 64, 273, 331, 409
MfeI CAATTG 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 6 cut(s) 137, 186, 198, 261, 365, 370
MlyI GAGTC 2 cut(s) 122, 331
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 4 cut(s) 37, 191, 292, 387
MseI TTAA 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 3 cut(s) 40, 361, 406
MunI CAATTG 1 cut(s) 370
MvaI CCWGG 2 cut(s) 40, 361
MwoI GCNNNNNNNGC 2 cut(s) 44, 347
NciI CCSGG 1 cut(s) 406
NdeII GATC 2 cut(s) 225, 475
NlaIV GGNNCC 3 cut(s) 48, 167, 168
NmuCI GTSAC 2 cut(s) 89, 125
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 1 cut(s) 329
PleI GAGTC 2 cut(s) 122, 330
PpsI GAGTC 2 cut(s) 122, 330
Psp6I CCWGG 2 cut(s) 38, 359
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 2 cut(s) 38, 359
PspN4I GGNNCC 3 cut(s) 48, 167, 168
PspOMI GGGCCC 1 cut(s) 165
PspPI GGNCC 4 cut(s) 165, 166, 175, 209
PvuII CAGCTG 1 cut(s) 350
Rsr2I CGGWCCG 1 cut(s) 209
RsrII CGGWCCG 1 cut(s) 209
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 2 cut(s) 225, 475
Sau96I GGNCC 4 cut(s) 165, 166, 175, 209
SchI GAGTC 2 cut(s) 122, 331
ScrFI CCNGG 3 cut(s) 40, 361, 406
SduI GDGCHC 1 cut(s) 169
SetI ASST 5 cut(s) 164, 183, 352, 449, 472
SinI GGWCC 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 6 cut(s) 137, 186, 198, 261, 365, 370
SsiI CCGC 4 cut(s) 102, 207, 286, 355
SspMI CTAG 2 cut(s) 99, 108
StyD4I CCNGG 3 cut(s) 38, 359, 404
TasI AATT 6 cut(s) 137, 186, 198, 261, 365, 370
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 1 cut(s) 248
TseFI GTSAC 2 cut(s) 89, 125
TseI GCWGC 1 cut(s) 327
Tsp45I GTSAC 2 cut(s) 89, 125
TspGWI ACGGA 2 cut(s) 102, 201
TspRI CASTG 1 cut(s) 248
Van91I CCANNNNNTGG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 4 cut(s) 137, 186, 198, 365
XspI CTAG 2 cut(s) 99, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.