Rh4BG065400

Golgin subfamily A member 6-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
11655154 .. 11655816
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG065400.1

Sequence Viewer

Length: 663 bp
ATGGGTGGAACTGAAAGCAAGAATAAGAAGAGGAGTAGTTCAAGAGAGAAAGATTGTGGAAGAGGGGTAGTATTGAGAGGCAAGGTTAGGCAAATCCAAGAGGAAATGAGTGAGATGGTGTGTGAGAGAAAGAAAGAGAGTGCAGCATATGAGAGGGACATGATGGTGTTTGCGTTCAAGGAGGCTGAATGGAAGCAAGAGAAGAAGAAGATGAGGGAGGAGGTGAAGATGTTGAGGAACATGGTGGAAGAGAAAGAGGAGAGGATTAGGGTAATTGAAGGTAGTAAGAAGAGTAGTGGTCATGAGAATGCTGAAGGCTGGGAAGTGGTGTTGGGGAGTAGTTGTGCTGCTAATTTGTTGGTTGAGCAAATGAAGGAGGAGAGAGCAAGGAGAGATGAGACTGTGGAGAAGTGGAAGCAACTTTATCTGGCTATCAAGATGGAGCTTGATGATCTCATCCAGAGGACTCATTGTGGTAATAGCTCCCTCTCTCTCTCTCTCACTCACTCTCTAACATGCATTGTTATAATCCACACGAGTATATATTATCTTATCTACTATGATGCAATCTTTCATTCTCATTTACTTCTGCATCTGAGGCATATCTCTCTGTTCTCAATTACTTGGAAATATGATTGCCAGATCCAATTGTTAAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

25.76

Weight (kDa)

8.44

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23930 AT4G13540
fragaria_vesca FvH4_4g05260 FvH4_4g05260
malus_domestica MD13G1226700.v1.1
prunus_persica Prupe.1G054100_v2.0.a1
pyrus_communis pycom13g19980 pycom16g19380
rosa_chinensis RchiOBHm_Chr4g0396171
rosa_laevigata RLG00000009563
rosa_multiflora Rmu_sc0006325.1_g000042
rosa_roxburghii Rroxscaffold_5G00341020
rosa_rugosa Rorug03G0351100
rosa_samantha Rh4BG065400 Rh4CG072100 Rh4DG062200
rosa_wichuraiana Rw4G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 527
AclWI GGATC 1 cut(s) 637
AcuI CTGAAG 1 cut(s) 333
AgsI TTSAA 3 cut(s) 42, 178, 278
AluBI AGCT 2 cut(s) 445, 483
AluI AGCT 2 cut(s) 445, 483
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 1 cut(s) 637
ApeKI GCWGC 2 cut(s) 143, 347
AsuHPI GGTGA 1 cut(s) 235
BauI CACGAG 1 cut(s) 535
BbvI GCAGC 2 cut(s) 155, 334
BccI CCATC 3 cut(s) 109, 157, 433
BcoDI GTCTC 1 cut(s) 392
BisI GCNGC 2 cut(s) 144, 348
BlsI GCNGC 2 cut(s) 145, 349
BmsI GCATC 2 cut(s) 553, 601
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
BseGI GGATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 587
BseRI GAGGAG 4 cut(s) 46, 233, 272, 392
BseXI GCAGC 2 cut(s) 155, 334
BseYI CCCAGC 1 cut(s) 318
BsgI GTGCAG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 451, 642
BspCNI CTCAG 1 cut(s) 588
BspHI TCATGA 1 cut(s) 301
BspPI GGATC 1 cut(s) 637
BssMI GATC 2 cut(s) 451, 642
BssSI CACGAG 1 cut(s) 535
Bst2BI CACGAG 1 cut(s) 535
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 4 cut(s) 23, 55, 243, 284
BstDEI CTNAG 1 cut(s) 596
BstF5I GGATG 1 cut(s) 456
BstKTI GATC 2 cut(s) 454, 645
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 2 cut(s) 451, 642
BstMWI GCNNNNNNNGC 1 cut(s) 598
BstNSI RCATGY 1 cut(s) 519
BstV1I GCAGC 2 cut(s) 155, 334
BstX2I RGATCY 1 cut(s) 642
BstYI RGATCY 1 cut(s) 642
BtsCI GGATG 1 cut(s) 456
CciI TCATGA 1 cut(s) 301
CviAII CATG 4 cut(s) 160, 241, 302, 516
CviJI RGCY 5 cut(s) 185, 318, 431, 445, 483
CviKI_1 RGCY 5 cut(s) 185, 318, 431, 445, 483
DdeI CTNAG 1 cut(s) 596
DpnI GATC 2 cut(s) 453, 644
DpnII GATC 2 cut(s) 451, 642
Eam1104I CTCTTC 4 cut(s) 23, 55, 243, 284
EarI CTCTTC 4 cut(s) 23, 55, 243, 284
Eco57I CTGAAG 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 521
FaeI CATG 4 cut(s) 163, 244, 305, 519
FaqI GGGAC 1 cut(s) 170
FatI CATG 4 cut(s) 159, 240, 301, 515
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 144, 348
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 2 cut(s) 144, 348
GluI GCNGC 2 cut(s) 144, 348
GsaI CCCAGC 1 cut(s) 322
Hin1II CATG 4 cut(s) 163, 244, 305, 519
HinfI GANTC 1 cut(s) 466
HphI GGTGA 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 597
Hpy188III TCNNGA 4 cut(s) 42, 302, 436, 460
HpyAV CCTTC 3 cut(s) 272, 308, 367
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 4 cut(s) 143, 519, 566, 592
HpyF10VI GCNNNNNNNGC 1 cut(s) 598
HpyF3I CTNAG 1 cut(s) 596
Hsp92II CATG 4 cut(s) 163, 244, 305, 519
Kzo9I GATC 2 cut(s) 451, 642
LmnI GCTCC 2 cut(s) 442, 488
LpnPI CCDG 4 cut(s) 304, 413, 473, 653
Lsp1109I GCAGC 2 cut(s) 155, 334
LweI GCATC 2 cut(s) 553, 601
MalI GATC 2 cut(s) 453, 644
MboI GATC 2 cut(s) 451, 642
MboII GAAGA 8 cut(s) 40, 72, 214, 217, 220, 238, 260, 301
MfeI CAATTG 1 cut(s) 647
MflI RGATCY 1 cut(s) 642
MluCI AATT 4 cut(s) 273, 352, 618, 647
MlyI GAGTC 1 cut(s) 460
Mph1103I ATGCAT 1 cut(s) 521
MseI TTAA 1 cut(s) 653
MslI CAYNNNNRTG 2 cut(s) 164, 306
MunI CAATTG 1 cut(s) 647
Mva1269I GAATGC 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 598
NdeI CATATG 1 cut(s) 148
NdeII GATC 2 cut(s) 451, 642
NlaIII CATG 4 cut(s) 163, 244, 305, 519
NsiI ATGCAT 1 cut(s) 521
NspI RCATGY 1 cut(s) 519
PagI TCATGA 1 cut(s) 301
PctI GAATGC 1 cut(s) 313
PkrI GCNGC 2 cut(s) 145, 349
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PsiI TTATAA 1 cut(s) 527
PspFI CCCAGC 1 cut(s) 318
PsuI RGATCY 1 cut(s) 642
RseI CAYNNNNRTG 2 cut(s) 164, 306
SaqAI TTAA 1 cut(s) 653
SatI GCNGC 2 cut(s) 144, 348
Sau3AI GATC 2 cut(s) 451, 642
SchI GAGTC 1 cut(s) 460
SetI ASST 5 cut(s) 87, 225, 283, 447, 485
SfaNI GCATC 2 cut(s) 553, 601
SmiMI CAYNNNNRTG 2 cut(s) 164, 306
Sse9I AATT 4 cut(s) 273, 352, 618, 647
TaaI ACNGT 1 cut(s) 403
TasI AATT 4 cut(s) 273, 352, 618, 647
Tru1I TTAA 1 cut(s) 653
Tru9I TTAA 1 cut(s) 653
TseI GCWGC 2 cut(s) 143, 347
TspDTI ATGAA 2 cut(s) 386, 563
XceI RCATGY 1 cut(s) 519
Zsp2I ATGCAT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.