Rh4DG062200

Golgin subfamily A member 6-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
9276733 .. 9277278
546 bp
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UTR
Exon/CDS
Intron
Rh4DG062200.1

Sequence Viewer

Length: 546 bp
ATGGGTGGAACTGAAAGCAAGAATAAGAAGAGGAGTAGTTCAAGAGAGAGAGATTGTGGAAGAGGGATAGTATTGAGAGGCAAGGTGAGGCAAATCCAAGAGGAAATGAGTGAGATGGTGTGTGAGAGAAAGAAAGAGAGTGCAGCATATGAGAGGGACATGATGGTGTTTGCGTTCAAGGAGGCTGAATGGAAGCAAGAGAAGAAGAAGATGAGGGAGGAGGTGAAGATGCTGAGGAACATGGTGGAACAAAAAGAGGAGAGGATTAGGGTAATTGAAGGTAGTAAGAAGAGTAGTGGTCATGAGAATGCTGAAGACTGGGAAGTGGTGTTGGGGAGTAGTGCTGCTGCTAATTTGTTGGTTGAGCAAATGAAGGAGGAGAGAGCAAGGAGAGATGAGACTGTGGAGAAGTGGAAGCAGCTTTATCTGGCTATCAAGATGGAGCTTGATGATCTCATCCAGAGGACTCATTGTGGTAATAGCTTCCTCTCTCTCTCTCTCACTCACTCTCTAACATGCATTGTTATAATCCACACAAGTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

21.08

Weight (kDa)

8.62

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23930 AT4G13540
fragaria_vesca FvH4_4g05260 FvH4_4g05260
malus_domestica MD13G1226700.v1.1
prunus_persica Prupe.1G054100_v2.0.a1
pyrus_communis pycom13g19980 pycom16g19380
rosa_chinensis RchiOBHm_Chr4g0396171
rosa_laevigata RLG00000009563
rosa_multiflora Rmu_sc0006325.1_g000042
rosa_roxburghii Rroxscaffold_5G00341020
rosa_rugosa Rorug03G0351100
rosa_samantha Rh4BG065400 Rh4CG072100 Rh4DG062200
rosa_wichuraiana Rw4G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 527
AcuI CTGAAG 1 cut(s) 333
AgsI TTSAA 3 cut(s) 42, 178, 278
AluBI AGCT 3 cut(s) 421, 445, 483
AluI AGCT 3 cut(s) 421, 445, 483
Alw26I GTCTC 1 cut(s) 392
ApeKI GCWGC 4 cut(s) 143, 344, 347, 418
AsuHPI GGTGA 2 cut(s) 97, 235
BbsI GAAGAC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 4 cut(s) 155, 331, 334, 430
BccI CCATC 3 cut(s) 109, 157, 433
BcoDI GTCTC 1 cut(s) 392
BisI GCNGC 4 cut(s) 144, 345, 348, 419
BlsI GCNGC 4 cut(s) 145, 346, 349, 420
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 321
Bpu10I CCTNAGC 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 323
BseGI GGATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 4 cut(s) 46, 233, 272, 392
BseXI GCAGC 4 cut(s) 155, 331, 334, 430
BsgI GTGCAG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 313
Bsp143I GATC 1 cut(s) 451
BspCNI CTCAG 1 cut(s) 225
BspHI TCATGA 1 cut(s) 301
BsrI ACTGG 1 cut(s) 323
BssMI GATC 1 cut(s) 451
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 3 cut(s) 23, 55, 284
BstDEI CTNAG 1 cut(s) 233
BstF5I GGATG 1 cut(s) 456
BstKTI GATC 1 cut(s) 454
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 1 cut(s) 451
BstNSI RCATGY 1 cut(s) 519
BstV1I GCAGC 4 cut(s) 155, 331, 334, 430
BstV2I GAAGAC 1 cut(s) 321
BtsCI GGATG 1 cut(s) 456
CciI TCATGA 1 cut(s) 301
CviAII CATG 4 cut(s) 160, 241, 302, 516
CviJI RGCY 5 cut(s) 185, 421, 431, 445, 483
CviKI_1 RGCY 5 cut(s) 185, 421, 431, 445, 483
DdeI CTNAG 1 cut(s) 233
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
Eam1104I CTCTTC 3 cut(s) 23, 55, 284
EarI CTCTTC 3 cut(s) 23, 55, 284
Eco57I CTGAAG 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 521
FaeI CATG 4 cut(s) 163, 244, 305, 519
FaiI YATR 9 cut(s) 148, 150, 161, 242, 303, 517, 527, 542, 544
FaqI GGGAC 1 cut(s) 170
FatI CATG 4 cut(s) 159, 240, 301, 515
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 144, 345, 348, 419
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 4 cut(s) 144, 345, 348, 419
GluI GCNGC 4 cut(s) 144, 345, 348, 419
Hin1II CATG 4 cut(s) 163, 244, 305, 519
HinfI GANTC 1 cut(s) 466
HphI GGTGA 2 cut(s) 97, 235
Hpy188III TCNNGA 4 cut(s) 42, 302, 436, 460
HpyAV CCTTC 2 cut(s) 272, 367
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 2 cut(s) 143, 519
HpyF3I CTNAG 1 cut(s) 233
Hsp92II CATG 4 cut(s) 163, 244, 305, 519
Kzo9I GATC 1 cut(s) 451
LmnI GCTCC 1 cut(s) 442
LpnPI CCDG 3 cut(s) 304, 413, 473
Lsp1109I GCAGC 4 cut(s) 155, 331, 334, 430
LweI GCATC 1 cut(s) 219
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MboII GAAGA 8 cut(s) 40, 72, 214, 217, 220, 238, 301, 326
MluCI AATT 2 cut(s) 273, 352
MlyI GAGTC 1 cut(s) 460
Mph1103I ATGCAT 1 cut(s) 521
MslI CAYNNNNRTG 2 cut(s) 164, 306
Mva1269I GAATGC 1 cut(s) 313
NdeI CATATG 1 cut(s) 148
NdeII GATC 1 cut(s) 451
NlaIII CATG 4 cut(s) 163, 244, 305, 519
NsiI ATGCAT 1 cut(s) 521
NspI RCATGY 1 cut(s) 519
PagI TCATGA 1 cut(s) 301
PctI GAATGC 1 cut(s) 313
PkrI GCNGC 4 cut(s) 145, 346, 349, 420
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PsiI TTATAA 1 cut(s) 527
RseI CAYNNNNRTG 2 cut(s) 164, 306
SatI GCNGC 4 cut(s) 144, 345, 348, 419
Sau3AI GATC 1 cut(s) 451
SchI GAGTC 1 cut(s) 460
SetI ASST 6 cut(s) 87, 225, 283, 423, 447, 485
SfaNI GCATC 1 cut(s) 219
SmiMI CAYNNNNRTG 2 cut(s) 164, 306
Sse9I AATT 2 cut(s) 273, 352
TaaI ACNGT 1 cut(s) 403
TasI AATT 2 cut(s) 273, 352
TseI GCWGC 4 cut(s) 143, 344, 347, 418
TspDTI ATGAA 1 cut(s) 386
XceI RCATGY 1 cut(s) 519
Zsp2I ATGCAT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.