Prupe.1G054100_v2.0.a1

Golgin subfamily A member 6-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
3778017 .. 3779948
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G054100.1

Sequence Viewer

Length: 711 bp
ATGGGGGGTTTTGCTAGCAAGAGGAAGAGCAATTCAAGTGAGAAAGTAGATGTTGGTGGGTTGAGAGAAAAGGTGAGGAATATTCAAGAGGAAATGAGTGGGATGGTGTATGAGAGGAAGAAAGAGAGTGCAGCATATGAGAGGGACATGATGGTGTTTGCATTCAAGGAGGCTGAGTGGAAGCAAGAGAAGAAGAAGATGCGGGAGGAGGTGAAGATGTTGAGGAAGGTGGTGGAGGAGAAGGAGGAGAGAATTAGAGGGATTGAGGATGCAGGCTTAGTTTTGGGAGCTGGAAATAATAAGAGTGGTGGGGAGAAGGAGTGGAAAGTGTTGTTGGCTGAGCAAATGAGGGAGGAGAGAGCAAGAAGAGATGAGACTGTCGAGAAGTGGAAGCAGCTTTATCTGGCTATTAAGATGGAGCTTGATGAACTCATTCAGAGGACACATTGTGAAAATGGGCTGTACTGGAGAGCAGAGGAGGAAGACACTGTGGAAGAGCTAAAGAAAGACATCAAAGCCAAAGAAGAAATGATTGCAGGCCTAAAATCCAGAATAGTTTCTATGGAGCATGAACAATACAAGAAGGAACGAGAGATTGACATATTAAGGCAAAGCTTAAGAATCATGAGCTGCAAGAAGACACTGCAGGTCACTAAGAATGTTTCTCGAGATTCACAGCCTGTGAATGTGAAACAGGCTAGAAAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

27.8

Weight (kDa)

9.07

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23930 AT4G13540
fragaria_vesca FvH4_4g05260 FvH4_4g05260
malus_domestica MD13G1226700.v1.1
prunus_persica Prupe.1G054100_v2.0.a1
pyrus_communis pycom13g19980 pycom16g19380
rosa_chinensis RchiOBHm_Chr4g0396171
rosa_laevigata RLG00000009563
rosa_multiflora Rmu_sc0006325.1_g000042
rosa_roxburghii Rroxscaffold_5G00341020
rosa_rugosa Rorug03G0351100
rosa_samantha Rh4BG065400 Rh4CG072100 Rh4DG062200
rosa_wichuraiana Rw4G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 637
AciI CCGC 1 cut(s) 202
AdeI CACNNNGTG 1 cut(s) 449
AfaI GTAC 1 cut(s) 464
AflII CTTAAG 1 cut(s) 616
AgsI TTSAA 3 cut(s) 36, 86, 166
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 6 cut(s) 290, 397, 421, 499, 615, 630
AluI AGCT 6 cut(s) 290, 397, 421, 499, 615, 630
Alw26I GTCTC 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 666
AoxI GGCC 1 cut(s) 538
ApeKI GCWGC 3 cut(s) 131, 394, 630
Asp700I GAANNNNTTC 2 cut(s) 432, 556
AsuHPI GGTGA 2 cut(s) 85, 223
AsuNHI GCTAGC 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 666
BbsI GAAGAC 2 cut(s) 489, 644
BbvI GCAGC 3 cut(s) 143, 406, 617
BccI CCATC 3 cut(s) 97, 145, 409
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 2 cut(s) 15, 699
BfmI CTRYAG 1 cut(s) 644
BfrI CTTAAG 1 cut(s) 616
BfuAI ACCTGC 1 cut(s) 637
BisI GCNGC 3 cut(s) 132, 395, 631
BlpI GCTNAGC 1 cut(s) 339
BlsI GCNGC 3 cut(s) 133, 396, 632
BmeT110I CYCGRG 1 cut(s) 666
BmsI GCATC 2 cut(s) 189, 259
BmtI GCTAGC 1 cut(s) 18
BpiI GAAGAC 2 cut(s) 489, 644
BpmI CTGGAG 1 cut(s) 487
Bpu1102I GCTNAGC 1 cut(s) 339
BsaXI ACNNNNNCTCC 4 cut(s) 161, 191, 305, 335
Bse1I ACTGG 1 cut(s) 470
BseGI GGATG 2 cut(s) 108, 274
BseMII CTCAG 2 cut(s) 165, 330
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 5 cut(s) 221, 251, 260, 368, 491
BseXI GCAGC 3 cut(s) 143, 406, 617
BsgI GTGCAG 1 cut(s) 150
BshFI GGCC 1 cut(s) 540
BsiHKCI CYCGRG 1 cut(s) 666
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 1 cut(s) 540
BsoBI CYCGRG 1 cut(s) 666
Bsp1720I GCTNAGC 1 cut(s) 339
BspACI CCGC 1 cut(s) 202
BspANI GGCC 1 cut(s) 540
BspCNI CTCAG 2 cut(s) 166, 331
BspHI TCATGA 1 cut(s) 624
BspMAI CTGCAG 1 cut(s) 648
BspMI ACCTGC 1 cut(s) 637
BspOI GCTAGC 1 cut(s) 18
BspQI GCTCTTC 2 cut(s) 20, 489
BspTI CTTAAG 1 cut(s) 616
BsrI ACTGG 1 cut(s) 470
Bst4CI ACNGT 2 cut(s) 379, 490
Bst6I CTCTTC 3 cut(s) 20, 361, 489
BstAFI CTTAAG 1 cut(s) 616
BstC8I GCNNGC 3 cut(s) 16, 274, 538
BstDEI CTNAG 4 cut(s) 174, 277, 339, 654
BstF5I GGATG 2 cut(s) 108, 274
BstMAI GTCTC 1 cut(s) 368
BstSFI CTRYAG 1 cut(s) 644
BstV1I GCAGC 3 cut(s) 143, 406, 617
BstV2I GAAGAC 2 cut(s) 489, 644
BsuRI GGCC 1 cut(s) 540
BtsCI GGATG 2 cut(s) 108, 274
BtsI GCAGTG 1 cut(s) 641
BtsIMutI CAGTG 2 cut(s) 486, 641
BveI ACCTGC 1 cut(s) 637
Cac8I GCNNGC 3 cut(s) 16, 274, 538
CciI TCATGA 1 cut(s) 624
Csp6I GTAC 1 cut(s) 463
CviAII CATG 3 cut(s) 148, 569, 625
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 4 cut(s) 174, 277, 339, 654
DraIII CACNNNGTG 1 cut(s) 449
Eam1104I CTCTTC 3 cut(s) 20, 361, 489
EarI CTCTTC 3 cut(s) 20, 361, 489
Eco147I AGGCCT 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 666
FaeI CATG 3 cut(s) 151, 572, 628
FaiI YATR 8 cut(s) 111, 136, 138, 149, 563, 570, 602, 626
FaqI GGGAC 1 cut(s) 158
FatI CATG 3 cut(s) 147, 568, 624
FauI CCCGC 1 cut(s) 195
FauNDI CATATG 1 cut(s) 136
Fnu4HI GCNGC 3 cut(s) 132, 395, 631
FokI GGATG 2 cut(s) 115, 281
Fsp4HI GCNGC 3 cut(s) 132, 395, 631
FspBI CTAG 2 cut(s) 15, 699
GluI GCNGC 3 cut(s) 132, 395, 631
GsuI CTGGAG 1 cut(s) 487
HaeIII GGCC 1 cut(s) 540
Hin1II CATG 3 cut(s) 151, 572, 628
HindIII AAGCTT 1 cut(s) 613
HinfI GANTC 2 cut(s) 621, 671
HphI GGTGA 2 cut(s) 85, 223
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 6 cut(s) 86, 382, 549, 625, 666, 668
HpyAV CCTTC 4 cut(s) 220, 235, 310, 577
HpyCH4III ACNGT 2 cut(s) 379, 490
HpyCH4V TGCA 6 cut(s) 131, 161, 272, 536, 633, 646
HpyF3I CTNAG 4 cut(s) 174, 277, 339, 654
Hsp92II CATG 3 cut(s) 151, 572, 628
LguI GCTCTTC 2 cut(s) 20, 489
LmnI GCTCC 3 cut(s) 287, 418, 565
LpnPI CCDG 9 cut(s) 258, 276, 389, 451, 522, 562, 632, 680, 693
Lsp1109I GCAGC 3 cut(s) 143, 406, 617
LweI GCATC 2 cut(s) 189, 259
MaeI CTAG 2 cut(s) 15, 699
MaeIII GTNAC 1 cut(s) 649
MluCI AATT 3 cut(s) 31, 252, 704
MroXI GAANNNNTTC 2 cut(s) 432, 556
MseI TTAA 3 cut(s) 411, 605, 617
MslI CAYNNNNRTG 1 cut(s) 152
MspCI CTTAAG 1 cut(s) 616
Mva1269I GAATGC 1 cut(s) 161
NdeI CATATG 1 cut(s) 136
NheI GCTAGC 1 cut(s) 14
NlaIII CATG 3 cut(s) 151, 572, 628
NmuCI GTSAC 1 cut(s) 649
PaeR7I CTCGAG 1 cut(s) 666
PagI TCATGA 1 cut(s) 624
PceI AGGCCT 1 cut(s) 540
PciSI GCTCTTC 2 cut(s) 20, 489
PctI GAATGC 1 cut(s) 161
PdmI GAANNNNTTC 2 cut(s) 432, 556
PfeI GAWTC 2 cut(s) 621, 671
PkrI GCNGC 3 cut(s) 133, 396, 632
PstI CTGCAG 1 cut(s) 648
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
RseI CAYNNNNRTG 1 cut(s) 152
SapI GCTCTTC 2 cut(s) 20, 489
SaqAI TTAA 3 cut(s) 411, 605, 617
SatI GCNGC 3 cut(s) 132, 395, 631
SfaNI GCATC 2 cut(s) 189, 259
SfcI CTRYAG 1 cut(s) 644
Sfr274I CTCGAG 1 cut(s) 666
SlaI CTCGAG 1 cut(s) 666
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 616, 666
SmoI CTYRAG 2 cut(s) 616, 666
Sse9I AATT 3 cut(s) 31, 252, 704
SseBI AGGCCT 1 cut(s) 540
SsiI CCGC 1 cut(s) 202
SspI AATATT 1 cut(s) 82
SspMI CTAG 2 cut(s) 15, 699
StuI AGGCCT 1 cut(s) 540
TaaI ACNGT 2 cut(s) 379, 490
TaqI TCGA 2 cut(s) 381, 667
TasI AATT 3 cut(s) 31, 252, 704
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 2 cut(s) 621, 671
Tru1I TTAA 3 cut(s) 411, 605, 617
Tru9I TTAA 3 cut(s) 411, 605, 617
TscAI CASTG 2 cut(s) 493, 648
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 3 cut(s) 131, 394, 630
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 2 cut(s) 441, 585
TspRI CASTG 2 cut(s) 493, 648
Vha464I CTTAAG 1 cut(s) 616
XhoI CTCGAG 1 cut(s) 666
XmnI GAANNNNTTC 2 cut(s) 432, 556
XspI CTAG 2 cut(s) 15, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.