pycom16g19380

Golgin subfamily A member 6-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
16420572 .. 16422203
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g19380.1

Sequence Viewer

Length: 804 bp
ATGGGCGGGTTTCTGAGCAAGAAGAAGGGTAATTTAAGTGAGAAAAATGCTGGTGGGTTGAGAGAAAAGGTGAGGAGTATTCAAGAGGAGATGAGTGAGATGGTGTGTGAGAGGAAGAAGGAGAGTGCAGCATATGAGAGGGACATGATGGTGTTTGCATTCAAGGAGGCTGAGTGGAAGCAAGAGAAGAAGAAGATGAGGGAGGAAGTGAAGATGTTGAGGAAGGTGGTGGAGGAGAAGGAGGAGAGGATTAGGGGAATGGAGGACTCTGGTGGTGGGGTTATGGTGGTCGGAGGTGGGAATAATAATAAGAGTAGTGTTGGCGGCGGCAGTGGTGGTGATGGTCGTGGAGTTGGTGGTGGTGGTGGTGGTGGGGAGAATAATGGTAAAGAGTGGGAAGTGTTGTTGGGGAGTGTTTTCTTGGCTGAGCAAATGAAGGAGGAAAGAGCAAGGAGGGATGAGACTGTGGAAAAGTGGAAGCAACTTTATCTGGCTATTAAGGTGGAGCTTGATGATCTCATTCAGAGGACACATTCTGGAAATGGGCTGTATTGGAAGGCAGAGGAAGAAGACAGTGTGGAAGATCTAAAGAGAGAGCTCAAAGCCAAGGAAGAAATGATTGCCTCTCTAAAATCCAAAATAGCTTCAATGGAGCATGACCATTTTAAGAAGGAAAGAGAGATTGACATAATAAGGCAGAGCTTACGAATCATGAGCTGCAAGAAGACACTGCAGGCCCCTAAGAATGTTTCTAGAGATTCACAGCTTGTGAAACCGAAAAAGAAACAGGCCAGAAAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

30.17

Weight (kDa)

9.22

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23930 AT4G13540
fragaria_vesca FvH4_4g05260 FvH4_4g05260
malus_domestica MD13G1226700.v1.1
prunus_persica Prupe.1G054100_v2.0.a1
pyrus_communis pycom13g19980 pycom16g19380
rosa_chinensis RchiOBHm_Chr4g0396171
rosa_laevigata RLG00000009563
rosa_multiflora Rmu_sc0006325.1_g000042
rosa_roxburghii Rroxscaffold_5G00341020
rosa_rugosa Rorug03G0351100
rosa_samantha Rh4BG065400 Rh4CG072100 Rh4DG062200
rosa_wichuraiana Rw4G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 6, 324, 327
AgsI TTSAA 3 cut(s) 83, 163, 648
AluBI AGCT 6 cut(s) 508, 598, 644, 702, 717, 766
AluI AGCT 6 cut(s) 508, 598, 644, 702, 717, 766
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 1 cut(s) 455
AoxI GGCC 2 cut(s) 735, 789
ApeKI GCWGC 2 cut(s) 128, 717
AspS9I GGNCC 1 cut(s) 736
AsuHPI GGTGA 2 cut(s) 82, 350
BanII GRGCYC 1 cut(s) 600
BbsI GAAGAC 2 cut(s) 576, 731
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 2 cut(s) 140, 704
BccI CCATC 3 cut(s) 94, 142, 335
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 1 cut(s) 753
BfmI CTRYAG 1 cut(s) 731
BglII AGATCT 1 cut(s) 583
BisI GCNGC 4 cut(s) 129, 325, 328, 718
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 4 cut(s) 130, 326, 329, 719
BmgT120I GGNCC 1 cut(s) 736
BmiI GGNNCC 1 cut(s) 738
BpiI GAAGAC 2 cut(s) 576, 731
Bpu1102I GCTNAGC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 606
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
BseDI CCNNGG 1 cut(s) 606
BseGI GGATG 1 cut(s) 463
BseMII CTCAG 3 cut(s) 5, 162, 417
BseRI GAGGAG 4 cut(s) 88, 101, 248, 257
BseXI GCAGC 2 cut(s) 140, 704
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 2 cut(s) 737, 791
BsiHKAI GWGCWC 1 cut(s) 600
BslFI GGGAC 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 2 cut(s) 737, 791
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 2 cut(s) 514, 583
Bsp1720I GCTNAGC 1 cut(s) 426
BspACI CCGC 3 cut(s) 6, 324, 327
BspANI GGCC 2 cut(s) 737, 791
BspCNI CTCAG 3 cut(s) 6, 163, 418
BspHI TCATGA 1 cut(s) 711
BspLI GGNNCC 1 cut(s) 738
BspMAI CTGCAG 1 cut(s) 735
BssECI CCNNGG 1 cut(s) 606
BssMI GATC 2 cut(s) 514, 583
BssT1I CCWWGG 1 cut(s) 606
Bst4CI ACNGT 2 cut(s) 466, 575
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 4 cut(s) 14, 171, 426, 741
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 2 cut(s) 517, 586
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 2 cut(s) 514, 583
BstSFI CTRYAG 1 cut(s) 731
BstV1I GCAGC 2 cut(s) 140, 704
BstV2I GAAGAC 2 cut(s) 576, 731
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 2 cut(s) 737, 791
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 2 cut(s) 337, 728
BtsIMutI CAGTG 3 cut(s) 337, 580, 728
Cac8I GCNNGC 1 cut(s) 735
CciI TCATGA 1 cut(s) 711
Cfr13I GGNCC 1 cut(s) 736
CviAII CATG 3 cut(s) 145, 656, 712
DdeI CTNAG 4 cut(s) 14, 171, 426, 741
DpnI GATC 2 cut(s) 516, 585
DpnII GATC 2 cut(s) 514, 583
Ecl136II GAGCTC 1 cut(s) 598
Eco130I CCWWGG 1 cut(s) 606
Eco24I GRGCYC 1 cut(s) 600
Eco53kI GAGCTC 1 cut(s) 598
EcoICRI GAGCTC 1 cut(s) 598
EcoO109I RGGNCCY 1 cut(s) 736
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 3 cut(s) 148, 659, 715
FaiI YATR 7 cut(s) 133, 135, 146, 284, 657, 689, 713
FaqI GGGAC 1 cut(s) 155
FatI CATG 3 cut(s) 144, 655, 711
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 129, 325, 328, 718
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 4 cut(s) 129, 325, 328, 718
FspBI CTAG 1 cut(s) 753
GluI GCNGC 4 cut(s) 129, 325, 328, 718
HaeIII GGCC 2 cut(s) 737, 791
Hin1II CATG 3 cut(s) 148, 659, 715
HinfI GANTC 3 cut(s) 266, 708, 758
HphI GGTGA 2 cut(s) 82, 350
Hpy188I TCNGA 3 cut(s) 15, 293, 525
Hpy188III TCNNGA 4 cut(s) 83, 537, 712, 753
HpyAV CCTTC 7 cut(s) 19, 112, 217, 232, 430, 550, 664
HpyCH4III ACNGT 2 cut(s) 466, 575
HpyCH4V TGCA 4 cut(s) 128, 158, 720, 733
HpyF3I CTNAG 4 cut(s) 14, 171, 426, 741
Hsp92II CATG 3 cut(s) 148, 659, 715
Kzo9I GATC 2 cut(s) 514, 583
LmnI GCTCC 2 cut(s) 505, 652
LpnPI CCDG 6 cut(s) 36, 255, 476, 522, 719, 773
Lsp1109I GCAGC 2 cut(s) 140, 704
MaeI CTAG 1 cut(s) 753
MalI GATC 2 cut(s) 516, 585
MboI GATC 2 cut(s) 514, 583
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 2 cut(s) 31, 797
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 271
MseI TTAA 3 cut(s) 35, 498, 666
MslI CAYNNNNRTG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 158
NdeI CATATG 1 cut(s) 133
NdeII GATC 2 cut(s) 514, 583
NlaIII CATG 3 cut(s) 148, 659, 715
NlaIV GGNNCC 1 cut(s) 738
PagI TCATGA 1 cut(s) 711
PctI GAATGC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 708, 758
PkrI GCNGC 4 cut(s) 130, 326, 329, 719
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 600
PspN4I GGNNCC 1 cut(s) 738
PspPI GGNCC 1 cut(s) 736
PstI CTGCAG 1 cut(s) 735
PsuI RGATCY 1 cut(s) 583
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 600
SaqAI TTAA 3 cut(s) 35, 498, 666
SatI GCNGC 4 cut(s) 129, 325, 328, 718
Sau3AI GATC 2 cut(s) 514, 583
Sau96I GGNCC 1 cut(s) 736
SchI GAGTC 1 cut(s) 260
SduI GDGCHC 1 cut(s) 600
SfcI CTRYAG 1 cut(s) 731
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 2 cut(s) 31, 797
SsiI CCGC 3 cut(s) 6, 324, 327
SspMI CTAG 1 cut(s) 753
SstI GAGCTC 1 cut(s) 600
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 2 cut(s) 466, 575
TasI AATT 2 cut(s) 31, 797
TauI GCSGC 2 cut(s) 327, 330
TfiI GAWTC 2 cut(s) 708, 758
Tru1I TTAA 3 cut(s) 35, 498, 666
Tru9I TTAA 3 cut(s) 35, 498, 666
TscAI CASTG 3 cut(s) 337, 580, 735
TseI GCWGC 2 cut(s) 128, 717
TspDTI ATGAA 1 cut(s) 449
TspRI CASTG 3 cut(s) 337, 580, 735
XbaI TCTAGA 1 cut(s) 752
XspI CTAG 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.