FvH4_4g05700

Glycine-rich cell wall structural

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017641
Physical Location & Seq
Reverse (-)
5051473 .. 5051925
453 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05700.t1

Sequence Viewer

Length: 453 bp
ATGGAGATGCAGCGTGTAGTTTTTGTGCTTGCTCTGGTTGCTGTTTTAGCATCAGCAGCTTGTGCACGTATGGTGCCTGGTGATCAACCCGCTACTAGCCCTAATGAGAAGACAGCCGTTCTGGATGCTTCTGCACCGAACGCAGCTGCCCCGACTGGCGTTAAAGACAAGAAGTGCATCGGTGCTATTGGCGGATTCGCAGGAATGGGAGGCGTAGCTGGAGTCGGCGGTGTAATGCCTCTTCGTGGTGGTGGCGTGATAGGTGGTGGGATTGGCAAATTTGGTGGAATAGGTGGAGTTGGCGGTCTCGGCGGAGTAGGTGGAGTTGGCGGTGTTGGCGGAGCTGGCGGTGGAGTTGGTGGCCTAGGCGGTGGAGCTGGTGGTGTTGGCGGTGTTGGCGGTGCTGCTGGAGGAGCCGGAGGAATTGGGGGAATCGGTGGCCTTCACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

13.05

Weight (kDa)

9.24

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017641)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05700
prunus_persica Prupe.1G060400_v2.0.a1
pyrus_communis pycom16g19810
rosa_laevigata RLG00000009494
rosa_multiflora Rmu_sc0000487.1_g000083
rosa_roxburghii Rroxscaffold_5G00341780
rosa_rugosa Rorug03G0346600
rosa_samantha Rh4AG073900 Rh4BG071200 Rh4CG079400 Rh4DG068700
rosa_wichuraiana Rw4G005990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 245
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 5 cut(s) 59, 146, 218, 344, 377
AluI AGCT 5 cut(s) 59, 146, 218, 344, 377
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 311
Alw44I GTGCAC 1 cut(s) 63
AoxI GGCC 2 cut(s) 361, 439
ApaLI GTGCAC 1 cut(s) 63
ApeKI GCWGC 5 cut(s) 10, 56, 143, 146, 404
ApoI RAATTY 1 cut(s) 278
AspA2I CCTAGG 1 cut(s) 364
AsuHPI GGTGA 2 cut(s) 92, 437
AvrII CCTAGG 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 73
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 5 cut(s) 22, 68, 133, 155, 391
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 78
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 2 cut(s) 96, 365
BisI GCNGC 5 cut(s) 11, 57, 144, 147, 405
BlnI CCTAGG 1 cut(s) 364
BlsI GCNGC 5 cut(s) 12, 58, 145, 148, 406
Bme1390I CCNGG 1 cut(s) 78
BmiI GGNNCC 2 cut(s) 75, 415
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 3 cut(s) 59, 115, 186
BpiI GAAGAC 1 cut(s) 116
BpmI CTGGAG 2 cut(s) 240, 429
BsaAI YACGTR 1 cut(s) 68
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 364
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 426
BseSI GKGCMC 1 cut(s) 67
BseXI GCAGC 5 cut(s) 22, 68, 133, 155, 391
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 2 cut(s) 363, 441
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 311
BsnI GGCC 2 cut(s) 363, 441
Bso31I GGTCTC 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 1 cut(s) 82
BspANI GGCC 2 cut(s) 363, 441
BspLI GGNNCC 2 cut(s) 75, 415
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 30, 346
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 67
BstV1I GCAGC 5 cut(s) 22, 68, 133, 155, 391
BstV2I GAAGAC 1 cut(s) 116
BsuRI GGCC 2 cut(s) 363, 441
BtsCI GGATG 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 30, 346
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 1 cut(s) 450
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
EciI GGCGGA 3 cut(s) 207, 327, 354
Eco130I CCWWGG 1 cut(s) 364
Eco31I GGTCTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 1 cut(s) 453
FaiI YATR 2 cut(s) 71, 451
FatI CATG 1 cut(s) 449
FauI CCCGC 1 cut(s) 97
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 5 cut(s) 11, 57, 144, 147, 405
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 5 cut(s) 11, 57, 144, 147, 405
FspBI CTAG 2 cut(s) 96, 365
GluI GCNGC 5 cut(s) 11, 57, 144, 147, 405
GsuI CTGGAG 2 cut(s) 240, 429
HaeIII GGCC 2 cut(s) 363, 441
HapII CCGG 1 cut(s) 417
Hin1II CATG 1 cut(s) 453
HinfI GANTC 3 cut(s) 195, 222, 432
HpaII CCGG 1 cut(s) 417
HphI GGTGA 2 cut(s) 92, 437
Hpy166II GTNNAC 1 cut(s) 65
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 452
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 4 cut(s) 10, 65, 134, 177
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 1 cut(s) 453
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 3 cut(s) 341, 374, 413
Lsp1109I GCAGC 5 cut(s) 22, 68, 133, 155, 391
LweI GCATC 3 cut(s) 59, 115, 186
MaeI CTAG 2 cut(s) 96, 365
MaeII ACGT 1 cut(s) 67
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 2 cut(s) 121, 233
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 2 cut(s) 278, 423
MlyI GAGTC 1 cut(s) 231
MnlI CCTC 4 cut(s) 203, 249, 404, 413
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 453
NlaIV GGNNCC 2 cut(s) 75, 415
NmeAIII GCCGAG 1 cut(s) 288
PfeI GAWTC 2 cut(s) 195, 432
PkrI GCNGC 5 cut(s) 12, 58, 145, 148, 406
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 75, 415
PvuII CAGCTG 1 cut(s) 146
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 5 cut(s) 11, 57, 144, 147, 405
Sau3AI GATC 1 cut(s) 82
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 1 cut(s) 67
SetI ASST 9 cut(s) 61, 70, 148, 220, 265, 295, 322, 346, 379
SfaNI GCATC 3 cut(s) 59, 115, 186
Sse9I AATT 2 cut(s) 278, 423
SspMI CTAG 2 cut(s) 96, 365
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 364
TaiI ACGT 1 cut(s) 70
TasI AATT 2 cut(s) 278, 423
TfiI GAWTC 2 cut(s) 195, 432
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseI GCWGC 5 cut(s) 10, 56, 143, 146, 404
VneI GTGCAC 1 cut(s) 63
XapI RAATTY 1 cut(s) 278
XmaJI CCTAGG 1 cut(s) 364
XspI CTAG 2 cut(s) 96, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.