Rh4AG073900

Glycine-rich cell wall structural

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017641
Physical Location & Seq
Forward (+)
15167832 .. 15168799
968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG073900.1

Sequence Viewer

Length: 522 bp
ATGCATACCCTACTCAGGTGTAGTGTCGTTCAAGCAGCTGAGAGGGTAAGGAAAACAGTGAGTGAGTGCGTGAGTGAGGTGAAGATGGAGATGCGGCGTATTGTTTTTGTGCTTGCTCTGGTTGCTTTATTAGCATCAGCAGCTTGTGCACGTATAGTGCCTGGTGATCAACCCGCTCCTAGCCCTAATGAGAAAACAGCCGTTTTGGATGCTACTGCATCTAAGGCAGCTGCCCAGACTGGCGTTAAAGACAAGAAGTGCATCGGTGCTGTTGGTGGATTTGCTGGAATGGGAGGCGTAGCTGGAGTTGGCGGTGTGATGCTCCTTGGTGGTGGGATTGGAAAATTTGGTGGAATAGGTGGAGTTGGAGGTCTTGGCGGAGCCGGTGGAGTAGGCGGTCTTGGCGGAGCTGGCGGTGGAGTTGGTGGCCTAGGCGGTGGAGCTGGTGGTGTTGGCGGTGTCGGGGGCGCTGCTGGTGGAGGAGCCGGCGGAATTGGGGGAATTGGTGGCCTTCACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

15.79

Weight (kDa)

9.5

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017641)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05700
prunus_persica Prupe.1G060400_v2.0.a1
pyrus_communis pycom16g19810
rosa_laevigata RLG00000009494
rosa_multiflora Rmu_sc0000487.1_g000083
rosa_roxburghii Rroxscaffold_5G00341780
rosa_rugosa Rorug03G0346600
rosa_samantha Rh4AG073900 Rh4BG071200 Rh4CG079400 Rh4DG068700
rosa_wichuraiana Rw4G005990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 176
AcsI RAATTY 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 1 cut(s) 32
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 6 cut(s) 38, 143, 230, 302, 410, 443
AluI AGCT 6 cut(s) 38, 143, 230, 302, 410, 443
Alw21I GWGCWC 1 cut(s) 151
Alw44I GTGCAC 1 cut(s) 147
AoxI GGCC 2 cut(s) 427, 508
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 5 cut(s) 35, 140, 227, 230, 470
ApoI RAATTY 1 cut(s) 344
AspA2I CCTAGG 1 cut(s) 430
AspLEI GCGC 1 cut(s) 470
AsuHPI GGTGA 3 cut(s) 91, 176, 506
AvrII CCTAGG 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 5 cut(s) 47, 152, 217, 239, 457
BccI CCATC 1 cut(s) 79
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 1 cut(s) 166
BfaI CTAG 2 cut(s) 180, 431
BfoI RGCGCY 1 cut(s) 471
BisI GCNGC 6 cut(s) 36, 95, 141, 228, 231, 471
BlnI CCTAGG 1 cut(s) 430
BlsI GCNGC 6 cut(s) 37, 96, 142, 229, 232, 472
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 382, 484
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 6 cut(s) 81, 143, 199, 227, 270, 309
BpmI CTGGAG 1 cut(s) 324
BsaAI YACGTR 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 325, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse118I RCCGGY 2 cut(s) 383, 485
Bse1I ACTGG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 325, 430
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 28, 30
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 495
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 5 cut(s) 47, 152, 217, 239, 457
BshFI GGCC 2 cut(s) 429, 510
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 384, 486
BslI CCNNNNNNNGG 1 cut(s) 15
BsnI GGCC 2 cut(s) 429, 510
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 166
BspANI GGCC 2 cut(s) 429, 510
BspCNI CTCAG 2 cut(s) 27, 31
BspLI GGNNCC 2 cut(s) 382, 484
BsrBI CCGCTC 1 cut(s) 176
BsrFI RCCGGY 2 cut(s) 383, 485
BsrI ACTGG 1 cut(s) 244
BssAI RCCGGY 2 cut(s) 383, 485
BssECI CCNNGG 2 cut(s) 325, 430
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 2 cut(s) 325, 430
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 58
BstAPI GCANNNNNTGC 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 3 cut(s) 114, 412, 487
BstDEI CTNAG 3 cut(s) 14, 39, 222
BstF5I GGATG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 7 cut(s) 122, 131, 140, 146, 224, 402, 411
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 5 cut(s) 47, 152, 217, 239, 457
BsuRI GGCC 2 cut(s) 429, 510
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 114, 412, 487
CfoI GCGC 1 cut(s) 470
Cfr10I RCCGGY 2 cut(s) 383, 485
CviAII CATG 1 cut(s) 519
DdeI CTNAG 3 cut(s) 14, 39, 222
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EciI GGCGGA 3 cut(s) 393, 420, 504
Eco130I CCWWGG 2 cut(s) 325, 430
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 2 cut(s) 325, 430
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 325, 430
FaeI CATG 1 cut(s) 522
FaiI YATR 3 cut(s) 6, 155, 520
FatI CATG 1 cut(s) 518
FauI CCCGC 1 cut(s) 181
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 6 cut(s) 36, 95, 141, 228, 231, 471
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 6 cut(s) 36, 95, 141, 228, 231, 471
FspBI CTAG 2 cut(s) 180, 431
GlaI GCGC 1 cut(s) 469
GluI GCNGC 6 cut(s) 36, 95, 141, 228, 231, 471
GsuI CTGGAG 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 2 cut(s) 429, 510
HapII CCGG 2 cut(s) 384, 486
HhaI GCGC 1 cut(s) 470
Hin1II CATG 1 cut(s) 522
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HpaII CCGG 2 cut(s) 384, 486
HphI GGTGA 3 cut(s) 91, 176, 506
Hpy166II GTNNAC 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 521
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 4 cut(s) 4, 149, 218, 261
HpyF10VI GCNNNNNNNGC 7 cut(s) 122, 131, 140, 146, 224, 402, 411
HpyF3I CTNAG 3 cut(s) 14, 39, 222
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 1 cut(s) 522
HspAI GCGC 1 cut(s) 468
KroI GCCGGC 1 cut(s) 485
KroNI GCCGGC 1 cut(s) 487
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 6 cut(s) 181, 327, 380, 407, 440, 482
Lsp1109I GCAGC 5 cut(s) 47, 152, 217, 239, 457
LweI GCATC 6 cut(s) 81, 143, 199, 227, 270, 309
MaeI CTAG 2 cut(s) 180, 431
MaeII ACGT 1 cut(s) 151
MalI GATC 1 cut(s) 168
MbiI CCGCTC 1 cut(s) 176
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 3 cut(s) 344, 492, 501
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 5 cut(s) 36, 70, 287, 362, 473
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 485
MseI TTAA 1 cut(s) 246
MspA1I CMGCKG 2 cut(s) 38, 230
MspI CCGG 2 cut(s) 384, 486
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 7 cut(s) 122, 131, 140, 146, 224, 402, 411
NaeI GCCGGC 1 cut(s) 487
NdeII GATC 1 cut(s) 166
NgoMIV GCCGGC 1 cut(s) 485
NlaIII CATG 1 cut(s) 522
NlaIV GGNNCC 2 cut(s) 382, 484
NsiI ATGCAT 1 cut(s) 6
PdiI GCCGGC 1 cut(s) 487
PkrI GCNGC 6 cut(s) 37, 96, 142, 229, 232, 472
Ppu21I YACGTR 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 382, 484
PvuII CAGCTG 2 cut(s) 38, 230
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 6 cut(s) 36, 95, 141, 228, 231, 471
Sau3AI GATC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 6 cut(s) 81, 143, 199, 227, 270, 309
Sse9I AATT 3 cut(s) 344, 492, 501
SspMI CTAG 2 cut(s) 180, 431
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 2 cut(s) 325, 430
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 154
TasI AATT 3 cut(s) 344, 492, 501
TauI GCSGC 1 cut(s) 97
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 63
TseI GCWGC 5 cut(s) 35, 140, 227, 230, 470
TspRI CASTG 1 cut(s) 63
VneI GTGCAC 1 cut(s) 147
XapI RAATTY 1 cut(s) 344
XmaJI CCTAGG 1 cut(s) 430
XspI CTAG 2 cut(s) 180, 431
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.