Rh4BG071200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017641
Physical Location & Seq
Reverse (-)
12600443 .. 12601416
974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG071200.1

Sequence Viewer

Length: 525 bp
ATGCATACCCTACTCAGGTGTAGTGTCGTTCAAGCAGCTGAGAGGGTAAGGAAAACAGTGAGTGAGTGCGTGAGTGAGGTGAAGATGGAGATGCGGCGTATCGTTTTTGTGCTTGCTCTGGTTGCTTTATTAGCATCAGCAGCTTGTGCACGTATAGTGCCTGGTGATCAACCCGCTCCTAGCCCTAATGAGAAAACAGCCGTTTTGGATGCTACTGCATCTAAGGCAGCTGCCCAGACTGGCGTTAAAGACAAGAAGTGCATCGGTGCTGTTGGTGGATTTGCTGGAATGGGAGGCGTAGCTGGAGTCGGCGGTGTGATGCCTCTTCTTGGTGGTGGGATTGGAAAATTTGGTGGAATAGGTGGAGTTGGAGGTCTTGGCGGAGCCGGTGGAGTAGGCGGTCTTGGCGGAGCTGGCGGTGGAGTTGGTGGCCTAGGCGGTGGAGCTGGTGGTGTTGGCGGTGTCGGGGGCGCTGCTGGTGGAGGAGCCGGCGGAATTGGGGGAATTGGTGGCCTTCACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

15.88

Weight (kDa)

9.5

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017641)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05700
prunus_persica Prupe.1G060400_v2.0.a1
pyrus_communis pycom16g19810
rosa_laevigata RLG00000009494
rosa_multiflora Rmu_sc0000487.1_g000083
rosa_roxburghii Rroxscaffold_5G00341780
rosa_rugosa Rorug03G0346600
rosa_samantha Rh4AG073900 Rh4BG071200 Rh4CG079400 Rh4DG068700
rosa_wichuraiana Rw4G005990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 176
AcsI RAATTY 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 15, 329
AgsI TTSAA 1 cut(s) 32
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 6 cut(s) 38, 143, 230, 302, 413, 446
AluI AGCT 6 cut(s) 38, 143, 230, 302, 413, 446
Alw21I GWGCWC 1 cut(s) 151
Alw44I GTGCAC 1 cut(s) 147
AoxI GGCC 2 cut(s) 430, 511
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 5 cut(s) 35, 140, 227, 230, 473
ApoI RAATTY 1 cut(s) 347
AspA2I CCTAGG 1 cut(s) 433
AspLEI GCGC 1 cut(s) 473
AsuHPI GGTGA 3 cut(s) 91, 176, 509
AvrII CCTAGG 1 cut(s) 433
BaeGI GKGCMC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 5 cut(s) 47, 152, 217, 239, 460
BccI CCATC 1 cut(s) 79
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 1 cut(s) 166
BfaI CTAG 2 cut(s) 180, 434
BfoI RGCGCY 1 cut(s) 474
BisI GCNGC 6 cut(s) 36, 95, 141, 228, 231, 474
BlnI CCTAGG 1 cut(s) 433
BlsI GCNGC 6 cut(s) 37, 96, 142, 229, 232, 475
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 385, 487
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 6 cut(s) 81, 143, 199, 227, 270, 309
BpmI CTGGAG 1 cut(s) 324
BsaAI YACGTR 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 433
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 329
Bse118I RCCGGY 2 cut(s) 386, 488
Bse1I ACTGG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 15, 329
BseMII CTCAG 2 cut(s) 28, 30
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 498
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 5 cut(s) 47, 152, 217, 239, 460
BshFI GGCC 2 cut(s) 432, 513
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 387, 489
BslI CCNNNNNNNGG 2 cut(s) 15, 329
BsnI GGCC 2 cut(s) 432, 513
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 166
BspANI GGCC 2 cut(s) 432, 513
BspCNI CTCAG 2 cut(s) 27, 31
BspLI GGNNCC 2 cut(s) 385, 487
BsrBI CCGCTC 1 cut(s) 176
BsrFI RCCGGY 2 cut(s) 386, 488
BsrI ACTGG 1 cut(s) 244
BssAI RCCGGY 2 cut(s) 386, 488
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 433
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 330
BstAPI GCANNNNNTGC 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 3 cut(s) 114, 415, 490
BstDEI CTNAG 3 cut(s) 14, 39, 222
BstF5I GGATG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 7 cut(s) 122, 131, 140, 146, 224, 405, 414
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 5 cut(s) 47, 152, 217, 239, 460
BsuRI GGCC 2 cut(s) 432, 513
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 114, 415, 490
CfoI GCGC 1 cut(s) 473
Cfr10I RCCGGY 2 cut(s) 386, 488
CviAII CATG 1 cut(s) 522
DdeI CTNAG 3 cut(s) 14, 39, 222
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
EciI GGCGGA 3 cut(s) 396, 423, 507
Eco130I CCWWGG 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 433
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 433
FaeI CATG 1 cut(s) 525
FaiI YATR 3 cut(s) 6, 155, 523
FatI CATG 1 cut(s) 521
FauI CCCGC 1 cut(s) 181
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 6 cut(s) 36, 95, 141, 228, 231, 474
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 6 cut(s) 36, 95, 141, 228, 231, 474
FspBI CTAG 2 cut(s) 180, 434
GlaI GCGC 1 cut(s) 472
GluI GCNGC 6 cut(s) 36, 95, 141, 228, 231, 474
GsuI CTGGAG 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 474
HaeIII GGCC 2 cut(s) 432, 513
HapII CCGG 2 cut(s) 387, 489
HhaI GCGC 1 cut(s) 473
Hin1II CATG 1 cut(s) 525
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HinfI GANTC 1 cut(s) 306
HpaII CCGG 2 cut(s) 387, 489
HphI GGTGA 3 cut(s) 91, 176, 509
Hpy166II GTNNAC 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 4 cut(s) 4, 149, 218, 261
HpyF10VI GCNNNNNNNGC 7 cut(s) 122, 131, 140, 146, 224, 405, 414
HpyF3I CTNAG 3 cut(s) 14, 39, 222
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 1 cut(s) 525
HspAI GCGC 1 cut(s) 471
KroI GCCGGC 1 cut(s) 488
KroNI GCCGGC 1 cut(s) 490
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 5 cut(s) 181, 383, 410, 443, 485
Lsp1109I GCAGC 5 cut(s) 47, 152, 217, 239, 460
LweI GCATC 6 cut(s) 81, 143, 199, 227, 270, 309
MaeI CTAG 2 cut(s) 180, 434
MaeII ACGT 1 cut(s) 151
MalI GATC 1 cut(s) 168
MbiI CCGCTC 1 cut(s) 176
MboI GATC 1 cut(s) 166
MboII GAAGA 2 cut(s) 94, 317
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 3 cut(s) 347, 495, 504
MlyI GAGTC 1 cut(s) 315
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 6 cut(s) 36, 70, 287, 333, 365, 476
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 488
MseI TTAA 1 cut(s) 246
MspA1I CMGCKG 2 cut(s) 38, 230
MspI CCGG 2 cut(s) 387, 489
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 7 cut(s) 122, 131, 140, 146, 224, 405, 414
NaeI GCCGGC 1 cut(s) 490
NdeII GATC 1 cut(s) 166
NgoMIV GCCGGC 1 cut(s) 488
NlaIII CATG 1 cut(s) 525
NlaIV GGNNCC 2 cut(s) 385, 487
NsiI ATGCAT 1 cut(s) 6
PdiI GCCGGC 1 cut(s) 490
PkrI GCNGC 6 cut(s) 37, 96, 142, 229, 232, 475
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
Ppu21I YACGTR 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 385, 487
PvuII CAGCTG 2 cut(s) 38, 230
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 6 cut(s) 36, 95, 141, 228, 231, 474
Sau3AI GATC 1 cut(s) 166
SchI GAGTC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 6 cut(s) 81, 143, 199, 227, 270, 309
Sse9I AATT 3 cut(s) 347, 495, 504
SspMI CTAG 2 cut(s) 180, 434
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 154
TasI AATT 3 cut(s) 347, 495, 504
TauI GCSGC 1 cut(s) 97
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 63
TseI GCWGC 5 cut(s) 35, 140, 227, 230, 473
TspRI CASTG 1 cut(s) 63
VneI GTGCAC 1 cut(s) 147
XapI RAATTY 1 cut(s) 347
XmaJI CCTAGG 1 cut(s) 433
XspI CTAG 2 cut(s) 180, 434
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.