Rh4DG068700

Glycine-rich cell wall structural

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017641
Physical Location & Seq
Reverse (-)
10201119 .. 10201571
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG068700.1

Sequence Viewer

Length: 453 bp
ATGGAGATGCGGCGTATCGTTTTTGTGCTTGCTCTGGTTGCTTTATTAGCATCAGCAGCTTGTGCACGTATGGTGCCTGGTGATCAACCCGCTACTAGCCCTAATGAGAAAACAGCCGTTTTGGATGCTACTGCACCTAAGGCAGCTGCCCCGACTGGCGTTAAAGACAAGAAGTGCATCGGTGCTGTTGGTGGATTCGCTGGAATGGGAGGCGTAGCTGGAGTCGGCGGTGTGATGCCTCTTCTTGGTGGTGGGATAGGTGGTGGGATCGGAAAATTTGGTGGAATAGGTGGAGTTGGAGGTCTTGGCGGAGTCGGTGGAGTAGGCGGTATTGGCGGAGCTGGCGGTGGAGTTGGTGGCCTAGGCGGTGGAGCTGGTGGTGTTGGCGGTGTCGGGGGCGCTGCTGGTGGAGGAGCCGGCGGAATTGGGGGAATTGGTGGCCTTCACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

13.05

Weight (kDa)

9.51

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017641)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05700
prunus_persica Prupe.1G060400_v2.0.a1
pyrus_communis pycom16g19810
rosa_laevigata RLG00000009494
rosa_multiflora Rmu_sc0000487.1_g000083
rosa_roxburghii Rroxscaffold_5G00341780
rosa_rugosa Rorug03G0346600
rosa_samantha Rh4AG073900 Rh4BG071200 Rh4CG079400 Rh4DG068700
rosa_wichuraiana Rw4G005990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 245
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 5 cut(s) 59, 146, 218, 341, 374
AluI AGCT 5 cut(s) 59, 146, 218, 341, 374
Alw21I GWGCWC 1 cut(s) 67
Alw44I GTGCAC 1 cut(s) 63
AlwI GGATC 1 cut(s) 275
AoxI GGCC 2 cut(s) 358, 439
ApaLI GTGCAC 1 cut(s) 63
ApeKI GCWGC 4 cut(s) 56, 143, 146, 401
ApoI RAATTY 1 cut(s) 275
AspA2I CCTAGG 1 cut(s) 361
AspLEI GCGC 1 cut(s) 401
AsuHPI GGTGA 2 cut(s) 92, 437
AvrII CCTAGG 1 cut(s) 361
AxyI CCTNAGG 1 cut(s) 138
BaeGI GKGCMC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 4 cut(s) 68, 133, 155, 388
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 78
BclI TGATCA 1 cut(s) 82
BfaI CTAG 2 cut(s) 96, 362
BfoI RGCGCY 1 cut(s) 402
BisI GCNGC 5 cut(s) 11, 57, 144, 147, 402
BlnI CCTAGG 1 cut(s) 361
BlsI GCNGC 5 cut(s) 12, 58, 145, 148, 403
Bme1390I CCNGG 1 cut(s) 78
BmiI GGNNCC 2 cut(s) 75, 415
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 4 cut(s) 59, 115, 186, 225
BpmI CTGGAG 1 cut(s) 240
BsaAI YACGTR 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 361
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 1 cut(s) 416
Bse1I ACTGG 1 cut(s) 160
Bse21I CCTNAGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 426
BseSI GKGCMC 1 cut(s) 67
BseXI GCAGC 4 cut(s) 68, 133, 155, 388
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 2 cut(s) 360, 441
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 245
BsnI GGCC 2 cut(s) 360, 441
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 82, 267
BspANI GGCC 2 cut(s) 360, 441
BspLI GGNNCC 2 cut(s) 75, 415
BspPI GGATC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 416
BsrI ACTGG 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 2 cut(s) 82, 267
BssT1I CCWWGG 1 cut(s) 361
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 68
BstC8I GCNNGC 3 cut(s) 30, 343, 418
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 130
BstH2I RGCGCY 1 cut(s) 402
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 2 cut(s) 85, 270
BstMBI GATC 2 cut(s) 82, 267
BstMWI GCNNNNNNNGC 7 cut(s) 38, 47, 56, 62, 140, 333, 342
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 67
BstV1I GCAGC 4 cut(s) 68, 133, 155, 388
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 2 cut(s) 360, 441
BtsCI GGATG 1 cut(s) 130
Cac8I GCNNGC 3 cut(s) 30, 343, 418
CfoI GCGC 1 cut(s) 401
Cfr10I RCCGGY 1 cut(s) 416
CviAII CATG 1 cut(s) 450
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 84, 269
DpnII GATC 2 cut(s) 82, 267
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
EciI GGCGGA 3 cut(s) 324, 351, 435
Eco130I CCWWGG 1 cut(s) 361
Eco81I CCTNAGG 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 1 cut(s) 453
FaiI YATR 2 cut(s) 71, 451
FatI CATG 1 cut(s) 449
FauI CCCGC 1 cut(s) 97
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 5 cut(s) 11, 57, 144, 147, 402
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 5 cut(s) 11, 57, 144, 147, 402
FspBI CTAG 2 cut(s) 96, 362
GlaI GCGC 1 cut(s) 400
GluI GCNGC 5 cut(s) 11, 57, 144, 147, 402
GsuI CTGGAG 1 cut(s) 240
HaeII RGCGCY 1 cut(s) 402
HaeIII GGCC 2 cut(s) 360, 441
HapII CCGG 1 cut(s) 417
HhaI GCGC 1 cut(s) 401
Hin1II CATG 1 cut(s) 453
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HinfI GANTC 3 cut(s) 195, 222, 312
HpaII CCGG 1 cut(s) 417
HphI GGTGA 2 cut(s) 92, 437
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 452
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 65, 134, 177
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 47, 56, 62, 140, 333, 342
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 1 cut(s) 453
HspAI GCGC 1 cut(s) 399
KroI GCCGGC 1 cut(s) 416
KroNI GCCGGC 1 cut(s) 418
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 2 cut(s) 82, 267
LmnI GCTCC 3 cut(s) 338, 371, 413
Lsp1109I GCAGC 4 cut(s) 68, 133, 155, 388
LweI GCATC 4 cut(s) 59, 115, 186, 225
MaeI CTAG 2 cut(s) 96, 362
MaeII ACGT 1 cut(s) 67
MalI GATC 2 cut(s) 84, 269
MboI GATC 2 cut(s) 82, 267
MboII GAAGA 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 3 cut(s) 275, 423, 432
MlyI GAGTC 2 cut(s) 231, 321
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 4 cut(s) 203, 249, 293, 404
MroNI GCCGGC 1 cut(s) 416
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 7 cut(s) 38, 47, 56, 62, 140, 333, 342
NaeI GCCGGC 1 cut(s) 418
NdeII GATC 2 cut(s) 82, 267
NgoMIV GCCGGC 1 cut(s) 416
NlaIII CATG 1 cut(s) 453
NlaIV GGNNCC 2 cut(s) 75, 415
PdiI GCCGGC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 5 cut(s) 12, 58, 145, 148, 403
PleI GAGTC 2 cut(s) 230, 320
PpsI GAGTC 2 cut(s) 230, 320
Ppu21I YACGTR 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 75, 415
PvuII CAGCTG 1 cut(s) 146
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 5 cut(s) 11, 57, 144, 147, 402
Sau3AI GATC 2 cut(s) 82, 267
SchI GAGTC 2 cut(s) 231, 321
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 1 cut(s) 67
SfaNI GCATC 4 cut(s) 59, 115, 186, 225
Sse9I AATT 3 cut(s) 275, 423, 432
SspMI CTAG 2 cut(s) 96, 362
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 361
TaiI ACGT 1 cut(s) 70
TasI AATT 3 cut(s) 275, 423, 432
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseI GCWGC 4 cut(s) 56, 143, 146, 401
VneI GTGCAC 1 cut(s) 63
XapI RAATTY 1 cut(s) 275
XmaJI CCTAGG 1 cut(s) 361
XspI CTAG 2 cut(s) 96, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.