Prupe.1G060400_v2.0.a1

Glycine-rich cell wall structural

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017641
Physical Location & Seq
Reverse (-)
4260209 .. 4260742
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G060400.1

Sequence Viewer

Length: 534 bp
ATGGAGATGTGGCGTGTCGTTTTGGTGCTTGCTTTGTCATCAGCACTATTGCATGCAAGCAGTGCACGTAAGGTTCCTGGAGATGACCATGTTAGCCATAATGAGCAAACCGTGGTTGTGCATGCAAGTGCACCAACGGCAGAGTCACCTACTGGCCTTGGTGACATGAAGAACTTCATATATGGCGGCGTTGGTGGGTTTGCTGGGATGGGAGGATGGGCTGGAGTTGGCGGTGTGATGCCTATTCTTGGTGGAATTGGTGGCGGGATTGGCAAAGCTGGTGGAATTGGAGGTGTTGGGGGAGTAGGAGGTATTGGAGGTGTTGGTGGTGGTGCTGGCGGTCTCGGCGGTCTTGGGGGGTTAGGTGGTGGTGCTGGTCACGGCGGTCTTGGGGGGTTAGGTGGCGGTACCGGTGGAGTTGGCGGTATTGGCGGGTTAGGTGGAGCTGGTGGAGCTGGCGGTTTAGGTGGTGTGGGTGGTGCTGCTGGCGGTGGAGTTGGTGGTGGAGCTGGTGGCATTCTTCCATGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

15.34

Weight (kDa)

6.48

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017641)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05700
prunus_persica Prupe.1G060400_v2.0.a1
pyrus_communis pycom16g19810
rosa_laevigata RLG00000009494
rosa_multiflora Rmu_sc0000487.1_g000083
rosa_roxburghii Rroxscaffold_5G00341780
rosa_rugosa Rorug03G0346600
rosa_samantha Rh4AG073900 Rh4BG071200 Rh4CG079400 Rh4DG068700
rosa_wichuraiana Rw4G005990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 407
AccB1I GGYRCC 1 cut(s) 407
AfaI GTAC 1 cut(s) 409
AfiI CCNNNNNNNGG 1 cut(s) 248
AgeI ACCGGT 1 cut(s) 410
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 4 cut(s) 278, 446, 455, 509
AluI AGCT 4 cut(s) 278, 446, 455, 509
Alw21I GWGCWC 2 cut(s) 67, 133
Alw26I GTCTC 1 cut(s) 347
Alw44I GTGCAC 2 cut(s) 63, 129
AoxI GGCC 1 cut(s) 154
ApaLI GTGCAC 2 cut(s) 63, 129
ApeKI GCWGC 1 cut(s) 482
AsiGI ACCGGT 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 173
Asp718I GGTACC 1 cut(s) 407
AsuHPI GGTGA 2 cut(s) 138, 173
BaeGI GKGCMC 2 cut(s) 67, 133
BanI GGYRCC 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 67, 133
BbvI GCAGC 1 cut(s) 469
BccI CCATC 2 cut(s) 202, 210
BceAI ACGGC 2 cut(s) 153, 397
BciT130I CCWGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 347
BisI GCNGC 2 cut(s) 187, 483
BlsI GCNGC 2 cut(s) 188, 484
Bme1390I CCNGG 1 cut(s) 78
BmiI GGNNCC 2 cut(s) 75, 409
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 228
BpmI CTGGAG 2 cut(s) 99, 243
BsaAI YACGTR 1 cut(s) 68
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 111, 157
BsaWI WCCGGW 1 cut(s) 410
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 111, 157
BseGI GGATG 2 cut(s) 213, 221
BseLI CCNNNNNNNGG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 157
BseSI GKGCMC 2 cut(s) 67, 133
BseXI GCAGC 1 cut(s) 469
BseYI CCCAGC 1 cut(s) 203
BshFI GGCC 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 407
BshTI ACCGGT 1 cut(s) 410
BsiHKAI GWGCWC 2 cut(s) 67, 133
BsiSI CCGG 1 cut(s) 411
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 347
BsmI GAATGC 1 cut(s) 516
BsnI GGCC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 67, 133
BspANI GGCC 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 75, 409
BspT107I GGYRCC 1 cut(s) 407
BspTNI GGTCTC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 410
BsrI ACTGG 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 2 cut(s) 111, 157
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 68
BstC8I GCNNGC 7 cut(s) 30, 54, 58, 123, 337, 457, 487
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 213, 221
BstMAI GTCTC 1 cut(s) 347
BstMWI GCNNNNNNNGC 6 cut(s) 62, 137, 270, 345, 429, 452
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 2 cut(s) 56, 125
BstSCI CCNGG 1 cut(s) 76
BstSLI GKGCMC 2 cut(s) 67, 133
BstV1I GCAGC 1 cut(s) 469
BsuRI GGCC 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 213, 221
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 7 cut(s) 30, 54, 58, 123, 337, 457, 487
Cfr10I RCCGGY 1 cut(s) 410
Csp6I GTAC 1 cut(s) 408
CspAI ACCGGT 1 cut(s) 410
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviAII CATG 5 cut(s) 53, 89, 122, 166, 525
CviJI RGCY 7 cut(s) 96, 156, 221, 278, 446, 455, 509
CviKI_1 RGCY 7 cut(s) 96, 156, 221, 278, 446, 455, 509
CviQI GTAC 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 5 cut(s) 56, 92, 125, 169, 528
FaiI YATR 9 cut(s) 54, 90, 99, 123, 167, 179, 181, 183, 526
FatI CATG 5 cut(s) 52, 88, 121, 165, 524
FauI CCCGC 2 cut(s) 257, 425
Fnu4HI GCNGC 2 cut(s) 187, 483
FokI GGATG 2 cut(s) 220, 228
Fsp4HI GCNGC 2 cut(s) 187, 483
GluI GCNGC 2 cut(s) 187, 483
GsaI CCCAGC 1 cut(s) 207
GsuI CTGGAG 2 cut(s) 99, 243
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 411
Hin1II CATG 5 cut(s) 56, 92, 125, 169, 528
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 411
HphI GGTGA 2 cut(s) 138, 173
Hpy166II GTNNAC 2 cut(s) 65, 131
Hpy8I GTNNAC 2 cut(s) 65, 131
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 6 cut(s) 52, 56, 65, 121, 125, 131
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 137, 270, 345, 429, 452
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 5 cut(s) 56, 92, 125, 169, 528
KpnI GGTACC 1 cut(s) 411
LmnI GCTCC 3 cut(s) 443, 452, 506
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 1 cut(s) 228
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 3 cut(s) 144, 161, 377
MboII GAAGA 2 cut(s) 181, 512
MhlI GDGCHC 2 cut(s) 67, 133
MluCI AATT 2 cut(s) 255, 285
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 4 cut(s) 206, 284, 302, 311
MroXI GAANNNNTTC 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 126
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 516
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 6 cut(s) 62, 137, 270, 345, 429, 452
NlaIII CATG 5 cut(s) 56, 92, 125, 169, 528
NlaIV GGNNCC 2 cut(s) 75, 409
NmeAIII GCCGAG 1 cut(s) 324
NmuCI GTSAC 3 cut(s) 144, 161, 377
NspI RCATGY 2 cut(s) 56, 125
PaeI GCATGC 2 cut(s) 56, 125
PctI GAATGC 1 cut(s) 516
PdmI GAANNNNTTC 1 cut(s) 173
PfoI TCCNGGA 1 cut(s) 76
PinAI ACCGGT 1 cut(s) 410
PkrI GCNGC 2 cut(s) 188, 484
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 75, 409
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
RseI CAYNNNNRTG 1 cut(s) 126
SatI GCNGC 2 cut(s) 187, 483
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 2 cut(s) 67, 133
SfaNI GCATC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 126
SphI GCATGC 2 cut(s) 56, 125
Sse9I AATT 2 cut(s) 255, 285
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 70
TasI AATT 2 cut(s) 255, 285
TauI GCSGC 1 cut(s) 189
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 3 cut(s) 144, 161, 377
TseI GCWGC 1 cut(s) 482
Tsp45I GTSAC 3 cut(s) 144, 161, 377
TspDTI ATGAA 2 cut(s) 166, 182
TspRI CASTG 1 cut(s) 67
VneI GTGCAC 2 cut(s) 63, 129
XceI RCATGY 2 cut(s) 56, 125
XmnI GAANNNNTTC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.