Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000487.1

Orthogroup ID

OG0017641

Physical Location & Seq

Genomic Coordinates Reverse (-)

354403 .. 354843

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000487.1_g000083.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggagatgcggcgtatcgtttttgtgcttgctctggtagctttattagcatcagcagcttgtgcacgtatggtgcctggtgatcaacccgctcctagccctaatgagaaaacagccgttttggatgctactgcatctaaggcagctgccccgactggcgttaaagacaagaagtgcatcggtgctgttggtggatttgctggaatgggaggcgtagctggagtcggcggtgtgatgcctcttcttggtggtgggattggaaaatttggtggaataggtggagttggaggtcttggcggagccggtggagtaggcggtcttggcggagctggcggtggagttggtggcctaggaggtggagctggtggtgttggcggtgtcgggggcgctgctggtggaggagccggcggaattgggggaattggtggccttcacccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

12.73

Weight (kDa)

9.51

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05700
prunus_persica	Prupe.1G060400_v2.0.a1
pyrus_communis	pycom16g19810
rosa_laevigata	RLG00000009494
rosa_multiflora	Rmu_sc0000487.1_g000083
rosa_roxburghii	Rroxscaffold_5G00341780
rosa_rugosa	Rorug03G0346600
rosa_samantha	Rh4AG073900 Rh4BG071200 Rh4CG079400 Rh4DG068700
rosa_wichuraiana	Rw4G005990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	92
AciI	CCGC	9 cut(s)	10, 90, 228, 297, 315, 324, 333, 375, 408
AcsI	RAATTY	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	6 cut(s)	41, 59, 146, 218, 329, 362
AluI	AGCT	6 cut(s)	41, 59, 146, 218, 329, 362
Alw21I	GWGCWC	1 cut(s)	67
Alw44I	GTGCAC	1 cut(s)	63
AoxI	GGCC	2 cut(s)	346, 427
ApaLI	GTGCAC	1 cut(s)	63
ApeKI	GCWGC	4 cut(s)	56, 143, 146, 389
ApoI	RAATTY	1 cut(s)	263
AspA2I	CCTAGG	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	389
AsuHPI	GGTGA	2 cut(s)	92, 425
AvrII	CCTAGG	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	68, 133, 155, 376
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	82
BfaI	CTAG	2 cut(s)	96, 350
BfoI	RGCGCY	1 cut(s)	390
BisI	GCNGC	5 cut(s)	11, 57, 144, 147, 390
BlnI	CCTAGG	1 cut(s)	349
BlsI	GCNGC	5 cut(s)	12, 58, 145, 148, 391
Bme1390I	CCNGG	1 cut(s)	78
BmiI	GGNNCC	3 cut(s)	75, 301, 403
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	5 cut(s)	59, 115, 143, 186, 225
BpmI	CTGGAG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	2 cut(s)	302, 404
Bse1I	ACTGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	414
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	4 cut(s)	68, 133, 155, 376
BshFI	GGCC	2 cut(s)	348, 429
BshNI	GGYRCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	303, 405
BslI	CCNNNNNNNGG	1 cut(s)	245
BsnI	GGCC	2 cut(s)	348, 429
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	9 cut(s)	10, 90, 228, 297, 315, 324, 333, 375, 408
BspANI	GGCC	2 cut(s)	348, 429
BspLI	GGNNCC	3 cut(s)	75, 301, 403
BspT107I	GGYRCC	1 cut(s)	73
BsrBI	CCGCTC	1 cut(s)	92
BsrFI	RCCGGY	2 cut(s)	302, 404
BsrI	ACTGG	1 cut(s)	160
BssAI	RCCGGY	2 cut(s)	302, 404
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	68
BstC8I	GCNNGC	3 cut(s)	30, 331, 406
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	130
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 47, 56, 62, 140, 321, 330
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	67
BstV1I	GCAGC	4 cut(s)	68, 133, 155, 376
BsuRI	GGCC	2 cut(s)	348, 429
BtsCI	GGATG	1 cut(s)	130
Cac8I	GCNNGC	3 cut(s)	30, 331, 406
CfoI	GCGC	1 cut(s)	389
Cfr10I	RCCGGY	2 cut(s)	302, 404
CviAII	CATG	1 cut(s)	438
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
EciI	GGCGGA	3 cut(s)	312, 339, 423
Eco130I	CCWWGG	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	1 cut(s)	441
FaiI	YATR	2 cut(s)	71, 439
FatI	CATG	1 cut(s)	437
FauI	CCCGC	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	5 cut(s)	11, 57, 144, 147, 390
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	5 cut(s)	11, 57, 144, 147, 390
FspBI	CTAG	2 cut(s)	96, 350
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	5 cut(s)	11, 57, 144, 147, 390
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	348, 429
HapII	CCGG	2 cut(s)	303, 405
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	1 cut(s)	441
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HinfI	GANTC	1 cut(s)	222
HpaII	CCGG	2 cut(s)	303, 405
HphI	GGTGA	2 cut(s)	92, 425
Hpy166II	GTNNAC	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	440
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	65, 134, 177
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 47, 56, 62, 140, 321, 330
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	441
HspAI	GCGC	1 cut(s)	387
KroI	GCCGGC	1 cut(s)	404
KroNI	GCCGGC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	5 cut(s)	97, 299, 326, 359, 401
Lsp1109I	GCAGC	4 cut(s)	68, 133, 155, 376
LweI	GCATC	5 cut(s)	59, 115, 143, 186, 225
MaeI	CTAG	2 cut(s)	96, 350
MaeII	ACGT	1 cut(s)	67
MalI	GATC	1 cut(s)	84
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	3 cut(s)	263, 411, 420
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	5 cut(s)	203, 249, 281, 347, 392
MroNI	GCCGGC	1 cut(s)	404
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	2 cut(s)	303, 405
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	7 cut(s)	38, 47, 56, 62, 140, 321, 330
NaeI	GCCGGC	1 cut(s)	406
NdeII	GATC	1 cut(s)	82
NgoMIV	GCCGGC	1 cut(s)	404
NlaIII	CATG	1 cut(s)	441
NlaIV	GGNNCC	3 cut(s)	75, 301, 403
PdiI	GCCGGC	1 cut(s)	406
PkrI	GCNGC	5 cut(s)	12, 58, 145, 148, 391
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	3 cut(s)	75, 301, 403
PvuII	CAGCTG	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	5 cut(s)	11, 57, 144, 147, 390
Sau3AI	GATC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	5 cut(s)	59, 115, 143, 186, 225
Sse9I	AATT	3 cut(s)	263, 411, 420
SsiI	CCGC	9 cut(s)	10, 90, 228, 297, 315, 324, 333, 375, 408
SspMI	CTAG	2 cut(s)	96, 350
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	349
TaiI	ACGT	1 cut(s)	70
TasI	AATT	3 cut(s)	263, 411, 420
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	4 cut(s)	56, 143, 146, 389
VneI	GTGCAC	1 cut(s)	63
XapI	RAATTY	1 cut(s)	263
XmaJI	CCTAGG	1 cut(s)	349
XspI	CTAG	2 cut(s)	96, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.