Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0017641

Physical Location & Seq

Genomic Coordinates Forward (+)

17192640 .. 17193086

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g19810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGATGTGGCGTGTCGTTTTGGTGCTTGCTTTGTCATCAGCGCTACTGCATGCAACTAGTGCACGCAAGGTGCCTGGTGATGATGGTCATGGCAGCACAACTGAGCACACAATGCTTGTGCATGCAAGTGCACCAGCGGCAGAGTCACCTACTGGCCTTCGTGACAAGAAGTGCATCTTTGGCGGCGTTGGTGGGTTTGCAGGGATGGGAGGGTTTGCTGGAGTTGGCGGGGTGATGCCGGTTCTTGGTGGAATTGGTGGAGGGATTGGGAAAGTTGGTGGAATAGGAGGAGTAGGAGGTATTGGCGGTGGTGGTCTTGGTGGAGTTGGCGGATTAGGCGGTGCTGGTGGCGCTGGTGGTCTTGGTGGTGTTGGAGGTGGCGTTGGTGGTGCAGCTGGCGGTGGCGTTGGTGGTGGAGCTGGTGCCCTTCTTCCACATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

13.16

Weight (kDa)

8.01

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05700
prunus_persica	Prupe.1G060400_v2.0.a1
pyrus_communis	pycom16g19810
rosa_laevigata	RLG00000009494
rosa_multiflora	Rmu_sc0000487.1_g000083
rosa_roxburghii	Rroxscaffold_5G00341780
rosa_rugosa	Rorug03G0346600
rosa_samantha	Rh4AG073900 Rh4BG071200 Rh4CG079400 Rh4DG068700
rosa_wichuraiana	Rw4G005990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	73, 425
AciI	CCGC	7 cut(s)	140, 186, 231, 309, 333, 342, 402
AfeI	AGCGCT	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	248
AhlI	ACTAGT	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	2 cut(s)	398, 422
AluI	AGCT	2 cut(s)	398, 422
Alw21I	GWGCWC	3 cut(s)	67, 111, 136
Alw44I	GTGCAC	2 cut(s)	63, 132
Aor51HI	AGCGCT	1 cut(s)	45
AoxI	GGCC	1 cut(s)	157
ApaLI	GTGCAC	2 cut(s)	63, 132
ApeKI	GCWGC	2 cut(s)	96, 395
AspLEI	GCGC	2 cut(s)	46, 356
AsuHPI	GGTGA	3 cut(s)	92, 141, 247
BaeGI	GKGCMC	3 cut(s)	67, 136, 430
BanI	GGYRCC	2 cut(s)	73, 425
Bbv12I	GWGCWC	3 cut(s)	67, 111, 136
BbvI	GCAGC	2 cut(s)	108, 407
BccI	CCATC	2 cut(s)	80, 202
BciT130I	CCWGG	1 cut(s)	78
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	1 cut(s)	60
BfoI	RGCGCY	2 cut(s)	47, 357
BisI	GCNGC	4 cut(s)	97, 141, 187, 396
BlsI	GCNGC	4 cut(s)	98, 142, 188, 397
Bme1390I	CCNGG	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	75, 427
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	2 cut(s)	186, 228
BpmI	CTGGAG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	213, 439
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	306
BseSI	GKGCMC	3 cut(s)	67, 136, 430
BseXI	GCAGC	2 cut(s)	108, 407
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	159
BshNI	GGYRCC	2 cut(s)	73, 425
BsiHKAI	GWGCWC	3 cut(s)	67, 111, 136
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	248
BsnI	GGCC	1 cut(s)	159
Bsp1286I	GDGCHC	4 cut(s)	67, 111, 136, 430
BspACI	CCGC	7 cut(s)	140, 186, 231, 309, 333, 342, 402
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	75, 427
BspT107I	GGYRCC	2 cut(s)	73, 425
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	78
BstAPI	GCANNNNNTGC	2 cut(s)	62, 115
BstC8I	GCNNGC	5 cut(s)	30, 54, 67, 126, 400
BstDEI	CTNAG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	213, 439
BstH2I	RGCGCY	2 cut(s)	47, 357
BstHHI	GCGC	2 cut(s)	46, 356
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 115, 140, 183, 339, 353
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	2 cut(s)	56, 128
BstSCI	CCNGG	1 cut(s)	76
BstSLI	GKGCMC	3 cut(s)	67, 136, 430
BstV1I	GCAGC	2 cut(s)	108, 407
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	213, 439
Cac8I	GCNNGC	5 cut(s)	30, 54, 67, 126, 400
CfoI	GCGC	2 cut(s)	46, 356
Cfr10I	RCCGGY	1 cut(s)	241
CviAII	CATG	3 cut(s)	53, 92, 125
CviJI	RGCY	3 cut(s)	159, 398, 422
CviKI_1	RGCY	3 cut(s)	159, 398, 422
DdeI	CTNAG	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	348
Eco47III	AGCGCT	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	3 cut(s)	56, 95, 128
FaiI	YATR	3 cut(s)	54, 93, 126
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	3 cut(s)	52, 91, 124
FauI	CCCGC	1 cut(s)	224
Fnu4HI	GCNGC	4 cut(s)	97, 141, 187, 396
FokI	GGATG	2 cut(s)	220, 426
Fsp4HI	GCNGC	4 cut(s)	97, 141, 187, 396
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	2 cut(s)	45, 355
GluI	GCNGC	4 cut(s)	97, 141, 187, 396
GsuI	CTGGAG	1 cut(s)	243
HaeII	RGCGCY	2 cut(s)	47, 357
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	2 cut(s)	46, 356
Hin1II	CATG	3 cut(s)	56, 95, 128
Hin6I	GCGC	2 cut(s)	44, 354
HinP1I	GCGC	2 cut(s)	44, 354
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	3 cut(s)	92, 141, 247
Hpy166II	GTNNAC	2 cut(s)	65, 134
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	2 cut(s)	65, 134
HpyAV	CCTTC	2 cut(s)	170, 440
HpyCH4V	TGCA	9 cut(s)	52, 56, 65, 124, 128, 134, 177, 203, 395
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 115, 140, 183, 339, 353
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	56, 95, 128
HspAI	GCGC	2 cut(s)	44, 354
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	2 cut(s)	108, 407
LweI	GCATC	2 cut(s)	186, 228
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	147, 164
MboII	GAAGA	1 cut(s)	425
MhlI	GDGCHC	4 cut(s)	67, 111, 136, 430
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	5 cut(s)	206, 257, 284, 293, 371
MslI	CAYNNNNRTG	1 cut(s)	129
MspA1I	CMGCKG	2 cut(s)	140, 398
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	6 cut(s)	62, 115, 140, 183, 339, 353
NlaIII	CATG	3 cut(s)	56, 95, 128
NlaIV	GGNNCC	2 cut(s)	75, 427
NmuCI	GTSAC	2 cut(s)	147, 164
NspI	RCATGY	2 cut(s)	56, 128
PaeI	GCATGC	2 cut(s)	56, 128
PkrI	GCNGC	4 cut(s)	98, 142, 188, 397
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	75, 427
PvuII	CAGCTG	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	129
SatI	GCNGC	4 cut(s)	97, 141, 187, 396
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	4 cut(s)	67, 111, 136, 430
SetI	ASST	6 cut(s)	75, 154, 304, 382, 400, 424
SfaNI	GCATC	2 cut(s)	186, 228
SmiMI	CAYNNNNRTG	1 cut(s)	129
SpeI	ACTAGT	1 cut(s)	59
SphI	GCATGC	2 cut(s)	56, 128
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	7 cut(s)	140, 186, 231, 309, 333, 342, 402
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	76
TasI	AATT	1 cut(s)	255
TauI	GCSGC	2 cut(s)	143, 189
TseFI	GTSAC	2 cut(s)	147, 164
TseI	GCWGC	2 cut(s)	96, 395
Tsp45I	GTSAC	2 cut(s)	147, 164
VneI	GTGCAC	2 cut(s)	63, 132
XceI	RCATGY	2 cut(s)	56, 128
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.