Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015593

Physical Location & Seq

Genomic Coordinates Forward (+)

5884737 .. 5886327

Gene Structure 1591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCTGATTATGATCCTGAAGCATGCAACACAAGGCTTCAACTTGGACTGGGCTTGGGTGGATATGCTCCAAGGCAAGAGATGAGGAATTCCAAGGATAGGCCTCTGGTTTGCTTTGACCTATCATTTACCCTTCTCCCAAAACCGGAGAAGATTGCTAACTTGGATCATCACATGGCAAATAGATCCAGTTTGACGATGAATATCATCGATGAAGACGATGAAGATCGGAGAAGCACTGATCGTGCCGATAGCGAGATCACCAACTTCAAAGATGGTGCAAGAAAGAAACTGAGGCTGACAAAAGAGCAAACCACTTTGCTGGAAGACAGCTTCAAGAGACATAGCACTCTTAATCCGAACCAGAAACATGCACTTGCTGAGCTACTGAATCTGAAGCCGAGGCAGGTTGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACAAAGCTGAAGCAAACAGAAGTGGACTGTGAGTTCTTGAAGAAATGGTGCGAAAGTCTGAACGCCGAGAACCGAAAACTGAAGAAGGAATTGCAGGAGCTAAAATTGTTGAGTGTGAATGGGGCATCATCACCACTATTGACTCATCAAATCCCAAAGACCACAATGCTCACAATGTGTTCATCTTGTGAGAGAAAGGCAAAAGCCAATGAACAATATCCTAATAACGAAGCAGCAGCAGCAGCGACGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

232

Amino Acids

26.44

Weight (kDa)

8.84

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	95 - 149	1.1e-15	Homeodomain
HALZ	PF02183	151 - 182	2.5e-09	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06590
malus_domestica	MD13G1236500.v1.1 MD16G1241700.v1.1
prunus_persica	Prupe.1G068400_v2.0.a1
pyrus_communis	pycom13g20920 pycom16g20240
rosa_chinensis	RchiOBHm_Chr4g0398491
rosa_laevigata	RLG00000009359
rosa_multiflora	Rmu_ssc0000240.1_g000024
rosa_roxburghii	Rroxscaffold_5G00343460
rosa_rugosa	Rorug04G0008800
rosa_samantha	Rh4AG086800 Rh4BG083400 Rh4CG094800 Rh4DG078200
rosa_wichuraiana	Rw4G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
AclWI	GGATC	3 cut(s)	8, 174, 180
AcsI	RAATTY	1 cut(s)	88
AcuI	CTGAAG	4 cut(s)	39, 416, 470, 542
AdeI	CACNNNGTG	1 cut(s)	618
AfiI	CCNNNNNNNGG	2 cut(s)	99, 145
AgsI	TTSAA	5 cut(s)	41, 271, 337, 413, 481
AloI	GAACNNNNNNTCC	2 cut(s)	458, 490
AluBI	AGCT	4 cut(s)	333, 385, 448, 541
AluI	AGCT	4 cut(s)	333, 385, 448, 541
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	3 cut(s)	8, 174, 180
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	4 cut(s)	674, 677, 680, 683
ApoI	RAATTY	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	253, 564
BbsI	GAAGAC	2 cut(s)	222, 333
BbvI	GCAGC	3 cut(s)	686, 689, 692
BccI	CCATC	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	334
BfuAI	ACCTGC	1 cut(s)	397
BisI	GCNGC	4 cut(s)	675, 678, 681, 684
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	4 cut(s)	676, 679, 682, 685
BmiI	GGNNCC	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	575
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	2 cut(s)	222, 333
Bpu1102I	GCTNAGC	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	210
BsaBI	GATNNNNATC	3 cut(s)	12, 203, 225
BsaJI	CCNNGG	3 cut(s)	71, 93, 401
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 145
Bse1I	ACTGG	2 cut(s)	54, 189
Bse8I	GATNNNNATC	3 cut(s)	12, 203, 225
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	3 cut(s)	71, 93, 401
BseJI	GATNNNNATC	3 cut(s)	12, 203, 225
BseLI	CCNNNNNNNGG	2 cut(s)	99, 145
BseMII	CTCAG	2 cut(s)	284, 372
BseNI	ACTGG	2 cut(s)	54, 189
BseXI	GCAGC	3 cut(s)	686, 689, 692
BshFI	GGCC	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	99, 145
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	103
Bsp143I	GATC	6 cut(s)	13, 166, 185, 226, 241, 258
Bsp1720I	GCTNAGC	1 cut(s)	381
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	2 cut(s)	285, 373
BspDI	ATCGAT	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	422
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	3 cut(s)	8, 174, 180
BspQI	GCTCTTC	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	54, 189
BssECI	CCNNGG	3 cut(s)	71, 93, 401
BssMI	GATC	6 cut(s)	13, 166, 185, 226, 241, 258
BssT1I	CCWWGG	2 cut(s)	71, 93
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	293, 381
BstKTI	GATC	6 cut(s)	16, 169, 188, 229, 244, 261
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	6 cut(s)	13, 166, 185, 226, 241, 258
BstMWI	GCNNNNNNNGC	2 cut(s)	680, 683
BstNSI	RCATGY	2 cut(s)	27, 374
BstV1I	GCAGC	3 cut(s)	686, 689, 692
BstV2I	GAAGAC	2 cut(s)	222, 333
BstX2I	RGATCY	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	103
BsuTUI	ATCGAT	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	1 cut(s)	25
ClaI	ATCGAT	1 cut(s)	210
CviAII	CATG	3 cut(s)	24, 175, 371
DdeI	CTNAG	2 cut(s)	293, 381
DpnI	GATC	6 cut(s)	15, 168, 187, 228, 243, 260
DpnII	GATC	6 cut(s)	13, 166, 185, 226, 241, 258
DraIII	CACNNNGTG	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Eco130I	CCWWGG	2 cut(s)	71, 93
Eco147I	AGGCCT	1 cut(s)	103
Eco57I	CTGAAG	4 cut(s)	39, 416, 470, 542
EcoRI	GAATTC	1 cut(s)	88
EcoT14I	CCWWGG	2 cut(s)	71, 93
ErhI	CCWWGG	2 cut(s)	71, 93
FaeI	CATG	3 cut(s)	27, 178, 374
FaiI	YATR	6 cut(s)	12, 25, 66, 176, 345, 372
FatI	CATG	3 cut(s)	23, 174, 370
Fnu4HI	GCNGC	4 cut(s)	675, 678, 681, 684
Fsp4HI	GCNGC	4 cut(s)	675, 678, 681, 684
GluI	GCNGC	4 cut(s)	675, 678, 681, 684
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	3 cut(s)	27, 178, 374
HinfI	GANTC	2 cut(s)	391, 583
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	2 cut(s)	253, 564
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	4 cut(s)	231, 360, 396, 501
Hpy188III	TCNNGA	4 cut(s)	17, 337, 424, 478
Hpy8I	GTNNAC	1 cut(s)	466
Hpy99I	CGWCG	1 cut(s)	691
HpyAV	CCTTC	2 cut(s)	143, 520
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4V	TGCA	4 cut(s)	27, 281, 374, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	680, 683
HpyF3I	CTNAG	2 cut(s)	293, 381
Hsp92II	CATG	3 cut(s)	27, 178, 374
Kzo9I	GATC	6 cut(s)	13, 166, 185, 226, 241, 258
LguI	GCTCTTC	1 cut(s)	427
LmnI	GCTCC	2 cut(s)	73, 538
Lsp1109I	GCAGC	3 cut(s)	686, 689, 692
LweI	GCATC	1 cut(s)	575
MalI	GATC	6 cut(s)	15, 168, 187, 228, 243, 260
MboI	GATC	6 cut(s)	13, 166, 185, 226, 241, 258
MboII	GAAGA	7 cut(s)	163, 227, 236, 338, 444, 493, 535
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	4 cut(s)	88, 530, 545, 691
MlyI	GAGTC	1 cut(s)	577
MnlI	CCTC	4 cut(s)	78, 114, 288, 396
MseI	TTAA	2 cut(s)	354, 694
MspI	CCGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	680, 683
NdeII	GATC	6 cut(s)	13, 166, 185, 226, 241, 258
NlaIII	CATG	3 cut(s)	27, 178, 374
NlaIV	GGNNCC	1 cut(s)	422
NmeAIII	GCCGAG	2 cut(s)	426, 532
NspI	RCATGY	2 cut(s)	27, 374
PaeI	GCATGC	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	4 cut(s)	676, 679, 682, 685
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PspN4I	GGNNCC	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	427
SaqAI	TTAA	2 cut(s)	354, 694
SatI	GCNGC	4 cut(s)	675, 678, 681, 684
Sau3AI	GATC	6 cut(s)	13, 166, 185, 226, 241, 258
SchI	GAGTC	1 cut(s)	577
SetI	ASST	6 cut(s)	123, 335, 387, 411, 450, 543
SfaNI	GCATC	1 cut(s)	575
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	4 cut(s)	88, 530, 545, 691
SseBI	AGGCCT	1 cut(s)	103
StuI	AGGCCT	1 cut(s)	103
StyI	CCWWGG	2 cut(s)	71, 93
TaaI	ACNGT	1 cut(s)	470
TaqI	TCGA	1 cut(s)	210
TasI	AATT	4 cut(s)	88, 530, 545, 691
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	2 cut(s)	354, 694
Tru9I	TTAA	2 cut(s)	354, 694
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	4 cut(s)	674, 677, 680, 683
TspDTI	ATGAA	5 cut(s)	215, 228, 237, 612, 666
TspRI	CASTG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	88
XceI	RCATGY	2 cut(s)	27, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.