Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015593

Physical Location & Seq

Genomic Coordinates Forward (+)

4877218 .. 4878650

Gene Structure 1433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G068400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGGTGGTGATGAGGAAGCATGCAACACAAAGCTAGCTCTTGGACTTGGTGTGGGTGAATATGCTTCAAGGCAAGAGATGAGGAAGAAGGAAAATCCTTCGGTTTGCTTAGACCTCTCTTTTGCGCTTTGCCCAAAACAGGAGGTTGCTACCTTGGGTTATCACATGGAAAATCGATCGAGTTTGAGGGCAATGGATGAAGATGAAGAAAGTGAGAGAAGTATTGGTACAAATAACAAGAGTATTATCATGAACAACAAAAATGGTGTGAGAAAGAAACTGAGGCTCACAAAAGAGCAATCCACCTTGCTGGAAGAAAGCTTCAGCCGCCATAGCACCCTTAATCCGGCCCGGAAACAGTCACTTGCTGAGCAATTGAATCTGAAGCCAAGACAAGTCGAAGTCTGGTTTCAGAACAGAAGAGCAAGGACAAAGTTGAAGCAAACAGAAGTAGACTGCGAGTTCTGGAAGAAACGCTGCGAAAGTCTTGGCGATGAGAATCGTAGGTTGAAGAAAGAATTGCAGGGGCTAAAATCGTTAAACAAGAATGAGGCATCGCCATTGTACATTCAAATCCCAAAGGCTACAATGCTTTCAATGTGTCCACCTTGTGAGAGGATGGTAAAAGCTCATCACCATAACCAAGCAGCTGCAAAGAACACAGAAGATCTCACTGTGGTCCGGAAGAGTAATAAATTGCAGGGCGGCTTTGACGGTACAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

242

Amino Acids

27.44

Weight (kDa)

9.29

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06590
malus_domestica	MD13G1236500.v1.1 MD16G1241700.v1.1
prunus_persica	Prupe.1G068400_v2.0.a1
pyrus_communis	pycom13g20920 pycom16g20240
rosa_chinensis	RchiOBHm_Chr4g0398491
rosa_laevigata	RLG00000009359
rosa_multiflora	Rmu_ssc0000240.1_g000024
rosa_roxburghii	Rroxscaffold_5G00343460
rosa_rugosa	Rorug04G0008800
rosa_samantha	Rh4AG086800 Rh4BG083400 Rh4CG094800 Rh4DG078200
rosa_wichuraiana	Rw4G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	453
AccIII	TCCGGA	1 cut(s)	681
AciI	CCGC	2 cut(s)	328, 705
AcuI	CTGAAG	2 cut(s)	307, 404
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	3 cut(s)	229, 566, 718
AfiI	CCNNNNNNNGG	2 cut(s)	139, 346
AgsI	TTSAA	6 cut(s)	69, 379, 439, 511, 572, 597
AluBI	AGCT	5 cut(s)	34, 38, 321, 629, 650
AluI	AGCT	5 cut(s)	34, 38, 321, 629, 650
Aor13HI	TCCGGA	1 cut(s)	681
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	3 cut(s)	477, 647, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	349, 679
AsuC2I	CCSGG	1 cut(s)	352
AsuHPI	GGTGA	3 cut(s)	20, 68, 626
AsuNHI	GCTAGC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	679
BarI	GAAGNNNNNNTAC	2 cut(s)	211, 243
BbvI	GCAGC	3 cut(s)	464, 637, 659
BccI	CCATC	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	352
BfaI	CTAG	1 cut(s)	35
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	5 cut(s)	328, 478, 648, 651, 706
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	5 cut(s)	329, 479, 649, 652, 707
Bme1390I	CCNGG	1 cut(s)	352
Bme18I	GGWCC	1 cut(s)	679
BmgT120I	GGNCC	2 cut(s)	349, 679
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	563
BmtI	GCTAGC	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	352
Bsa29I	ATCGAT	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	681
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 346
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	681
BseCI	ATCGAT	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	202, 624
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	139, 346
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	2 cut(s)	272, 360
BseXI	GCAGC	3 cut(s)	464, 637, 659
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	350
BshVI	ATCGAT	1 cut(s)	175
BsiEI	CGRYCG	1 cut(s)	179
BsiSI	CCGG	3 cut(s)	347, 352, 682
BslI	CCNNNNNNNGG	2 cut(s)	139, 346
BsnI	GGCC	1 cut(s)	350
Bsp13I	TCCGGA	1 cut(s)	681
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	2 cut(s)	176, 667
Bsp1720I	GCTNAGC	1 cut(s)	369
BspACI	CCGC	2 cut(s)	328, 705
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	2 cut(s)	273, 361
BspDI	ATCGAT	1 cut(s)	175
BspEI	TCCGGA	1 cut(s)	681
BspHI	TCATGA	1 cut(s)	249
BspOI	GCTAGC	1 cut(s)	38
BspQI	GCTCTTC	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	198
BsrGI	TGTACA	1 cut(s)	564
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	2 cut(s)	176, 667
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	3 cut(s)	360, 676, 716
Bst6I	CTCTTC	2 cut(s)	415, 680
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	2 cut(s)	22, 36
BstDEI	CTNAG	3 cut(s)	109, 281, 369
BstF5I	GGATG	2 cut(s)	202, 624
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	2 cut(s)	179, 670
BstMBI	GATC	2 cut(s)	176, 667
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	2 cut(s)	327, 333
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	464, 637, 659
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	667
Bsu15I	ATCGAT	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	350
BsuTUI	ATCGAT	1 cut(s)	175
BtgZI	GCGATG	2 cut(s)	507, 540
BtsCI	GGATG	2 cut(s)	202, 624
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	2 cut(s)	22, 36
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	349, 679
ClaI	ATCGAT	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	228, 565, 717
CviAII	CATG	3 cut(s)	21, 166, 250
CviQI	GTAC	3 cut(s)	228, 565, 717
DdeI	CTNAG	3 cut(s)	109, 281, 369
DpnI	GATC	2 cut(s)	178, 669
DpnII	GATC	2 cut(s)	176, 667
DraIII	CACNNNGTG	1 cut(s)	611
Eam1104I	CTCTTC	2 cut(s)	415, 680
EarI	CTCTTC	2 cut(s)	415, 680
Eco130I	CCWWGG	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	679
Eco57I	CTGAAG	2 cut(s)	307, 404
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	3 cut(s)	24, 169, 253
FaiI	YATR	6 cut(s)	22, 63, 167, 251, 333, 639
FatI	CATG	3 cut(s)	20, 165, 249
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	5 cut(s)	328, 478, 648, 651, 706
FokI	GGATG	2 cut(s)	209, 631
Fsp4HI	GCNGC	5 cut(s)	328, 478, 648, 651, 706
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	5 cut(s)	328, 478, 648, 651, 706
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	3 cut(s)	347, 352, 682
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	24, 169, 253
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	2 cut(s)	379, 499
HpaII	CCGG	3 cut(s)	347, 352, 682
HphI	GGTGA	3 cut(s)	20, 68, 626
Hpy166II	GTNNAC	2 cut(s)	454, 605
Hpy188I	TCNGA	2 cut(s)	384, 414
Hpy188III	TCNNGA	3 cut(s)	250, 466, 682
Hpy8I	GTNNAC	2 cut(s)	454, 605
HpyAV	CCTTC	2 cut(s)	82, 108
HpyCH4III	ACNGT	3 cut(s)	360, 676, 716
HpyCH4V	TGCA	4 cut(s)	24, 523, 653, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	327, 333
HpyF3I	CTNAG	3 cut(s)	109, 281, 369
Hsp92II	CATG	3 cut(s)	24, 169, 253
HspAI	GCGC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	681
Kzo9I	GATC	2 cut(s)	176, 667
LguI	GCTCTTC	1 cut(s)	415
LpnPI	CCDG	9 cut(s)	125, 296, 360, 365, 391, 451, 509, 686, 695
Lsp1109I	GCAGC	3 cut(s)	464, 637, 659
LweI	GCATC	1 cut(s)	563
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	2 cut(s)	178, 669
MboI	GATC	2 cut(s)	176, 667
MboII	GAAGA	9 cut(s)	97, 212, 218, 326, 432, 481, 523, 677, 697
MfeI	CAATTG	1 cut(s)	374
MflI	RGATCY	1 cut(s)	667
MluCI	AATT	4 cut(s)	374, 518, 695, 721
MnlI	CCTC	8 cut(s)	7, 75, 125, 136, 180, 276, 544, 609
MroI	TCCGGA	1 cut(s)	681
MseI	TTAA	3 cut(s)	342, 539, 724
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	3 cut(s)	347, 352, 682
MspR9I	CCNGG	1 cut(s)	352
MunI	CAATTG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	327, 333
NciI	CCSGG	1 cut(s)	352
NdeII	GATC	2 cut(s)	176, 667
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	24, 169, 253
NmuCI	GTSAC	1 cut(s)	360
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PagI	TCATGA	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	415
PfeI	GAWTC	2 cut(s)	379, 499
PkrI	GCNGC	5 cut(s)	329, 479, 649, 652, 707
Ple19I	CGATCG	1 cut(s)	179
PspPI	GGNCC	2 cut(s)	349, 679
PsuI	RGATCY	1 cut(s)	667
PvuI	CGATCG	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	3 cut(s)	229, 566, 718
RsaNI	GTAC	3 cut(s)	228, 565, 717
SapI	GCTCTTC	1 cut(s)	415
SaqAI	TTAA	3 cut(s)	342, 539, 724
SatI	GCNGC	5 cut(s)	328, 478, 648, 651, 706
Sau3AI	GATC	2 cut(s)	176, 667
Sau96I	GGNCC	2 cut(s)	349, 679
ScrFI	CCNGG	1 cut(s)	352
SfaNI	GCATC	1 cut(s)	563
SinI	GGWCC	1 cut(s)	679
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	4 cut(s)	374, 518, 695, 721
SsiI	CCGC	2 cut(s)	328, 705
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	360, 676, 716
TaqI	TCGA	3 cut(s)	175, 179, 399
TasI	AATT	4 cut(s)	374, 518, 695, 721
TatI	WGTACW	1 cut(s)	564
TauI	GCSGC	2 cut(s)	330, 708
TfiI	GAWTC	2 cut(s)	379, 499
Tru1I	TTAA	3 cut(s)	342, 539, 724
Tru9I	TTAA	3 cut(s)	342, 539, 724
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	3 cut(s)	477, 647, 650
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	3 cut(s)	213, 219, 266
TspRI	CASTG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	679
XceI	RCATGY	1 cut(s)	24
XmiI	GTMKAC	1 cut(s)	453
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.