Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015593

Physical Location & Seq

Genomic Coordinates Forward (+)

12983577 .. 12985116

Gene Structure 1540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGTGATTATGATCCTGAAGCATGCAACACAAGCCTCCAACTTGGACTTGGTTCGGGTGGATATGCTCCAAGGGAAGAGATGAGGACCAAGGATAGGCCTCTGGTCTGCTTAGACCTATCATTTGCTCTTCGCCCAAAACCGGAGGAGCTTGCTAACTTGGATGATCACATGGCAAATGGATCGAGTTTGAAGACGAATATTGTCTATGAAGACGAAGAAGATCGGAGAAGCACTGATCATACCGATAGCGAGATCACCAACAGCAAAAATGGTGCAAGAAAGAAACTGAGGCTGACAAAAGAGCAATCCGCTTTGCTAGAAGACAGCTTCAAGCGCCATAGCACCCTTAATCCGACCCAGAAACATGCTCTTGCTGGACTATTGCATCTGAAGCCAAGGCAGGTTGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACAAAGCTGAAACAAACAGAAGTGGACTGTGAGTTCTTGAAGAAATGGTGCGAAAGTCTGAGCGCCGAGAATCGAAAACTGAAGAAGGAACTGCAGGAGCTAAAATCGTTGAGTGTGAATGGGGCATCATCGCCATTATTGACTCATCAAATCCCAAAGACCACGATGCTCACAATGTGTTCATCTTGTGAGAGAAAGGCAAAAGCTAATGACCAATATCCTAATAACGAAGCAGCAGCAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

228

Amino Acids

25.8

Weight (kDa)

8.66

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	94 - 148	5.2e-15	Homeodomain
HALZ	PF02183	150 - 183	2.4e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06590
malus_domestica	MD13G1236500.v1.1 MD16G1241700.v1.1
prunus_persica	Prupe.1G068400_v2.0.a1
pyrus_communis	pycom13g20920 pycom16g20240
rosa_chinensis	RchiOBHm_Chr4g0398491
rosa_laevigata	RLG00000009359
rosa_multiflora	Rmu_ssc0000240.1_g000024
rosa_roxburghii	Rroxscaffold_5G00343460
rosa_rugosa	Rorug04G0008800
rosa_samantha	Rh4AG086800 Rh4BG083400 Rh4CG094800 Rh4DG078200
rosa_wichuraiana	Rw4G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	2 cut(s)	8, 190
AcuI	CTGAAG	3 cut(s)	39, 413, 539
AdeI	CACNNNGTG	1 cut(s)	615
AfiI	CCNNNNNNNGG	2 cut(s)	96, 142
AgsI	TTSAA	4 cut(s)	193, 334, 410, 478
AloI	GAACNNNNNNTCC	2 cut(s)	455, 487
AluBI	AGCT	5 cut(s)	151, 330, 445, 538, 644
AluI	AGCT	5 cut(s)	151, 330, 445, 538, 644
AlwI	GGATC	2 cut(s)	8, 190
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	671, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspLEI	GCGC	2 cut(s)	339, 503
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	17, 250
AvaII	GGWCC	1 cut(s)	87
BbsI	GAAGAC	3 cut(s)	200, 219, 330
BbvI	GCAGC	1 cut(s)	683
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BclI	TGATCA	2 cut(s)	166, 238
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	530
BfoI	RGCGCY	2 cut(s)	340, 504
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	2 cut(s)	672, 675
BlsI	GCNGC	2 cut(s)	673, 676
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	419
BmsI	GCATC	3 cut(s)	397, 572, 594
BpiI	GAAGAC	3 cut(s)	200, 219, 330
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	71, 90, 398
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 142
Bse8I	GATNNNNATC	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	71, 90, 398
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	96, 142
BseMII	CTCAG	2 cut(s)	281, 488
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	683
BshFI	GGCC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	143
BslI	CCNNNNNNNGG	2 cut(s)	96, 142
BsnI	GGCC	1 cut(s)	100
Bsp143I	GATC	6 cut(s)	13, 166, 182, 223, 238, 255
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	2 cut(s)	282, 489
BspLI	GGNNCC	1 cut(s)	419
BspMAI	CTGCAG	1 cut(s)	534
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	2 cut(s)	8, 190
BspQI	GCTCTTC	2 cut(s)	135, 424
BssECI	CCNNGG	3 cut(s)	71, 90, 398
BssMI	GATC	6 cut(s)	13, 166, 182, 223, 238, 255
BssT1I	CCWWGG	3 cut(s)	71, 90, 398
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	3 cut(s)	72, 135, 424
BstC8I	GCNNGC	2 cut(s)	25, 153
BstDEI	CTNAG	3 cut(s)	112, 290, 497
BstF5I	GGATG	1 cut(s)	169
BstH2I	RGCGCY	2 cut(s)	340, 504
BstHHI	GCGC	2 cut(s)	339, 503
BstKTI	GATC	6 cut(s)	16, 169, 185, 226, 241, 258
BstMBI	GATC	6 cut(s)	13, 166, 182, 223, 238, 255
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 336, 394
BstNSI	RCATGY	2 cut(s)	27, 371
BstSFI	CTRYAG	1 cut(s)	530
BstV1I	GCAGC	1 cut(s)	683
BstV2I	GAAGAC	3 cut(s)	200, 219, 330
BsuRI	GGCC	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	552
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	25, 153
CfoI	GCGC	2 cut(s)	339, 503
Cfr13I	GGNCC	1 cut(s)	87
CviAII	CATG	3 cut(s)	24, 172, 368
CviJI	RGCY	9 cut(s)	36, 100, 151, 295, 330, 397, 445, 538, 644
CviKI_1	RGCY	9 cut(s)	36, 100, 151, 295, 330, 397, 445, 538, 644
DdeI	CTNAG	3 cut(s)	112, 290, 497
DpnI	GATC	6 cut(s)	15, 168, 184, 225, 240, 257
DpnII	GATC	6 cut(s)	13, 166, 182, 223, 238, 255
DraIII	CACNNNGTG	1 cut(s)	615
Eam1104I	CTCTTC	3 cut(s)	72, 135, 424
EarI	CTCTTC	3 cut(s)	72, 135, 424
Eco130I	CCWWGG	3 cut(s)	71, 90, 398
Eco147I	AGGCCT	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	87
Eco57I	CTGAAG	3 cut(s)	39, 413, 539
EcoT14I	CCWWGG	3 cut(s)	71, 90, 398
ErhI	CCWWGG	3 cut(s)	71, 90, 398
FaeI	CATG	3 cut(s)	27, 175, 371
FaiI	YATR	8 cut(s)	12, 25, 66, 173, 210, 243, 342, 369
FatI	CATG	3 cut(s)	23, 171, 367
FbaI	TGATCA	2 cut(s)	166, 238
Fnu4HI	GCNGC	2 cut(s)	672, 675
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	672, 675
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	2 cut(s)	338, 502
GluI	GCNGC	2 cut(s)	672, 675
HaeII	RGCGCY	2 cut(s)	340, 504
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	143
HhaI	GCGC	2 cut(s)	339, 503
Hin1II	CATG	3 cut(s)	27, 175, 371
Hin6I	GCGC	2 cut(s)	337, 501
HinP1I	GCGC	2 cut(s)	337, 501
HinfI	GANTC	2 cut(s)	508, 580
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	2 cut(s)	17, 250
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	4 cut(s)	228, 357, 393, 498
Hpy188III	TCNNGA	3 cut(s)	17, 421, 475
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4V	TGCA	4 cut(s)	27, 278, 388, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 336, 394
HpyF3I	CTNAG	3 cut(s)	112, 290, 497
Hsp92II	CATG	3 cut(s)	27, 175, 371
HspAI	GCGC	2 cut(s)	337, 501
Ksp22I	TGATCA	2 cut(s)	166, 238
Kzo9I	GATC	6 cut(s)	13, 166, 182, 223, 238, 255
LguI	GCTCTTC	2 cut(s)	135, 424
LmnI	GCTCC	3 cut(s)	73, 148, 535
LpnPI	CCDG	8 cut(s)	30, 89, 156, 363, 374, 389, 434, 518
Lsp1109I	GCAGC	1 cut(s)	683
LweI	GCATC	3 cut(s)	397, 572, 594
MaeI	CTAG	1 cut(s)	320
MalI	GATC	6 cut(s)	15, 168, 184, 225, 240, 257
MboI	GATC	6 cut(s)	13, 166, 182, 223, 238, 255
MluCI	AATT	1 cut(s)	682
MlyI	GAGTC	1 cut(s)	574
MmeI	TCCRAC	2 cut(s)	64, 380
MnlI	CCTC	5 cut(s)	47, 78, 111, 139, 285
MseI	TTAA	2 cut(s)	351, 685
MspI	CCGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	3 cut(s)	33, 336, 394
NdeII	GATC	6 cut(s)	13, 166, 182, 223, 238, 255
NlaIII	CATG	3 cut(s)	27, 175, 371
NlaIV	GGNNCC	1 cut(s)	419
NmeAIII	GCCGAG	1 cut(s)	529
NspI	RCATGY	2 cut(s)	27, 371
PaeI	GCATGC	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	100
PciSI	GCTCTTC	2 cut(s)	135, 424
PfeI	GAWTC	1 cut(s)	508
PkrI	GCNGC	2 cut(s)	673, 676
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	419
PspPI	GGNCC	1 cut(s)	87
PstI	CTGCAG	1 cut(s)	534
SapI	GCTCTTC	2 cut(s)	135, 424
SaqAI	TTAA	2 cut(s)	351, 685
SatI	GCNGC	2 cut(s)	672, 675
Sau3AI	GATC	6 cut(s)	13, 166, 182, 223, 238, 255
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	574
SetI	ASST	7 cut(s)	120, 153, 332, 408, 447, 540, 646
SfaNI	GCATC	3 cut(s)	397, 572, 594
SfcI	CTRYAG	1 cut(s)	530
SinI	GGWCC	1 cut(s)	87
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	1 cut(s)	682
SseBI	AGGCCT	1 cut(s)	100
SsiI	CCGC	1 cut(s)	312
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	1 cut(s)	320
StuI	AGGCCT	1 cut(s)	100
StyI	CCWWGG	3 cut(s)	71, 90, 398
TaaI	ACNGT	1 cut(s)	467
TaqI	TCGA	2 cut(s)	185, 511
TasI	AATT	1 cut(s)	682
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	2 cut(s)	351, 685
Tru9I	TTAA	2 cut(s)	351, 685
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	2 cut(s)	671, 674
TspDTI	ATGAA	2 cut(s)	225, 609
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	87
XceI	RCATGY	2 cut(s)	27, 371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.