Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015593

Physical Location & Seq

Genomic Coordinates Forward (+)

23981327 .. 23982462

Gene Structure 1136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1236500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGATGATGATCAAGCAGCATGCAGCACAGAGCTCCAACTAGGGCTTGGTGTGTGTGAATATGCTTCAAGGCAAGAGAAGAAGGATAATCCTTTGGTATGCTTGGACCTATTATTTGCGCTTTGCCCGAAGCAGGAGGTTCCTAGTTCGGACGATCACATCGCAAATGGATCAGGTTTGAAGACGATGGATGAAGATGAAGATAGTTATGAGAGAAGCACTGAGCACACCAATATAAAGGGTGTAATCATGAACAACAAAAACGTTGTGAGAAAGAAGCTGAGGCTCACAAAAGAGCAATCCACCTTGCTGGAAGAGAGCTTCAATCGGCATAGCACCCTAAATCCGGCCCAGAAACAGTCACTTGCTGAGCAATTGAATCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAGTTGAAGCAATCAGAAGTAGACTGTGAGTTCTTAAAGAAATGCTGTGAAAGTCTCAGCATCGAGAATCAGAGGTTGAAGCAAGAATTGCAGGAGCTGAAATCATTAAACGGCAACGGGACATCACCATTGTACATTCAGATTCCAAAGGCTACAATGCTTACAATGTGCCCATCTTGTGAGAAAATGGTAAAAGCTCGTCATAATAACCAAGCAGCTGCAAAGAAAGCAGAAGATCTCAATGTGGTCCGAAAGAGCAGTAATAAATTGCAGGGTGGCTTTGACGGTACAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

243

Amino Acids

27.33

Weight (kDa)

8.02

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	91 - 145	2.6e-16	Homeodomain
HALZ	PF02183	147 - 180	5.1e-08	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06590
malus_domestica	MD13G1236500.v1.1 MD16G1241700.v1.1
prunus_persica	Prupe.1G068400_v2.0.a1
pyrus_communis	pycom13g20920 pycom16g20240
rosa_chinensis	RchiOBHm_Chr4g0398491
rosa_laevigata	RLG00000009359
rosa_multiflora	Rmu_ssc0000240.1_g000024
rosa_roxburghii	Rroxscaffold_5G00343460
rosa_rugosa	Rorug04G0008800
rosa_samantha	Rh4AG086800 Rh4BG083400 Rh4CG094800 Rh4DG078200
rosa_wichuraiana	Rw4G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	453
AclI	AACGTT	1 cut(s)	264
AclWI	GGATC	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	2 cut(s)	566, 721
AfiI	CCNNNNNNNGG	2 cut(s)	133, 346
AgsI	TTSAA	7 cut(s)	69, 181, 325, 379, 401, 439, 511
AluBI	AGCT	6 cut(s)	34, 280, 321, 529, 629, 650
AluI	AGCT	6 cut(s)	34, 280, 321, 529, 629, 650
Alw21I	GWGCWC	2 cut(s)	36, 228
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	1 cut(s)	178
AlwNI	CAGNNNCTG	1 cut(s)	529
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	4 cut(s)	17, 24, 647, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	3 cut(s)	106, 349, 679
AsuHPI	GGTGA	1 cut(s)	549
AvaII	GGWCC	2 cut(s)	106, 679
BaeGI	GKGCMC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	188
Bbv12I	GWGCWC	2 cut(s)	36, 228
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	4 cut(s)	29, 36, 637, 659
BccI	CCATC	2 cut(s)	181, 613
BceAI	ACGGC	1 cut(s)	559
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	2 cut(s)	41, 144
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	4 cut(s)	18, 25, 648, 651
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	4 cut(s)	19, 26, 649, 652
Bme18I	GGWCC	2 cut(s)	106, 679
BmgT120I	GGNCC	3 cut(s)	106, 349, 679
BmiI	GGNNCC	1 cut(s)	141
BmsI	GCATC	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	281
Bpu1102I	GCTNAGC	1 cut(s)	369
BsaBI	GATNNNNATC	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 346
Bse8I	GATNNNNATC	1 cut(s)	9
BseGI	GGATG	2 cut(s)	10, 196
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	2 cut(s)	133, 346
BseMII	CTCAG	4 cut(s)	213, 272, 360, 502
BseSI	GKGCMC	1 cut(s)	605
BseXI	GCAGC	4 cut(s)	29, 36, 637, 659
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	2 cut(s)	36, 228
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	2 cut(s)	133, 346
BsmAI	GTCTC	1 cut(s)	491
BsmFI	GGGAC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	3 cut(s)	36, 228, 605
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	4 cut(s)	10, 154, 170, 667
Bsp1720I	GCTNAGC	1 cut(s)	369
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	4 cut(s)	214, 273, 361, 501
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	564
BssMI	GATC	4 cut(s)	10, 154, 170, 667
Bst4CI	ACNGT	3 cut(s)	360, 458, 719
Bst6I	CTCTTC	2 cut(s)	309, 415
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	4 cut(s)	222, 281, 369, 488
BstF5I	GGATG	2 cut(s)	10, 196
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	4 cut(s)	13, 157, 173, 670
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	4 cut(s)	10, 154, 170, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	520, 659
BstNSI	RCATGY	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	605
BstV1I	GCAGC	4 cut(s)	29, 36, 637, 659
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	667
BsuRI	GGCC	1 cut(s)	350
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	10, 196
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	22
CaiI	CAGNNNCTG	1 cut(s)	529
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	106, 349, 679
Csp6I	GTAC	2 cut(s)	565, 720
CviAII	CATG	2 cut(s)	21, 250
CviQI	GTAC	2 cut(s)	565, 720
DdeI	CTNAG	4 cut(s)	222, 281, 369, 488
DpnI	GATC	4 cut(s)	12, 156, 172, 669
DpnII	GATC	4 cut(s)	10, 154, 170, 667
Eam1104I	CTCTTC	2 cut(s)	309, 415
EarI	CTCTTC	2 cut(s)	309, 415
Ecl136II	GAGCTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	106, 679
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	2 cut(s)	24, 253
FaiI	YATR	8 cut(s)	22, 63, 100, 210, 236, 251, 333, 636
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	2 cut(s)	20, 249
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	4 cut(s)	18, 25, 648, 651
FokI	GGATG	2 cut(s)	17, 203
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	4 cut(s)	18, 25, 648, 651
FspBI	CTAG	2 cut(s)	41, 144
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	18, 25, 648, 651
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	1 cut(s)	347
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	2 cut(s)	24, 253
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	3 cut(s)	379, 499, 574
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	1 cut(s)	549
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	7 cut(s)	151, 384, 414, 448, 504, 573, 683
Hpy188III	TCNNGA	2 cut(s)	250, 496
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	3 cut(s)	360, 458, 719
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	4 cut(s)	24, 523, 653, 703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	520, 659
HpyF3I	CTNAG	4 cut(s)	222, 281, 369, 488
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	24, 253
HspAI	GCGC	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	10, 154, 170, 667
LguI	GCTCTTC	1 cut(s)	415
LmnI	GCTCC	2 cut(s)	39, 526
LpnPI	CCDG	7 cut(s)	119, 159, 296, 360, 365, 509, 689
Lsp1109I	GCAGC	4 cut(s)	29, 36, 637, 659
LweI	GCATC	1 cut(s)	501
MaeI	CTAG	2 cut(s)	41, 144
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	4 cut(s)	12, 156, 172, 669
MboI	GATC	4 cut(s)	10, 154, 170, 667
MboII	GAAGA	7 cut(s)	91, 193, 206, 212, 326, 432, 677
MfeI	CAATTG	1 cut(s)	374
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	3 cut(s)	36, 228, 605
MluCI	AATT	4 cut(s)	374, 518, 698, 723
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	3 cut(s)	130, 276, 498
MseI	TTAA	3 cut(s)	467, 539, 727
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	1 cut(s)	347
MunI	CAATTG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	520, 659
NdeII	GATC	4 cut(s)	10, 154, 170, 667
NlaIII	CATG	2 cut(s)	24, 253
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	360
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PagI	TCATGA	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	379, 499, 574
PkrI	GCNGC	4 cut(s)	19, 26, 649, 652
Psp124BI	GAGCTC	1 cut(s)	36
Psp1406I	AACGTT	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	3 cut(s)	106, 349, 679
PstNI	CAGNNNCTG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	667
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	2 cut(s)	566, 721
RsaNI	GTAC	2 cut(s)	565, 720
SacI	GAGCTC	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	415
SaqAI	TTAA	3 cut(s)	467, 539, 727
SatI	GCNGC	4 cut(s)	18, 25, 648, 651
Sau3AI	GATC	4 cut(s)	10, 154, 170, 667
Sau96I	GGNCC	3 cut(s)	106, 349, 679
SduI	GDGCHC	3 cut(s)	36, 228, 605
SfaNI	GCATC	1 cut(s)	501
SinI	GGWCC	2 cut(s)	106, 679
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	4 cut(s)	374, 518, 698, 723
SspMI	CTAG	2 cut(s)	41, 144
SstI	GAGCTC	1 cut(s)	36
TaaI	ACNGT	3 cut(s)	360, 458, 719
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	495
TasI	AATT	4 cut(s)	374, 518, 698, 723
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	3 cut(s)	379, 499, 574
Tru1I	TTAA	3 cut(s)	467, 539, 727
Tru9I	TTAA	3 cut(s)	467, 539, 727
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	4 cut(s)	17, 24, 647, 650
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	3 cut(s)	207, 213, 266
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	2 cut(s)	106, 679
XceI	RCATGY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	453
XspI	CTAG	2 cut(s)	41, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.