Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015593

Physical Location & Seq

Genomic Coordinates Forward (+)

26133014 .. 26134118

Gene Structure 1105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1241700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGTGATGTTGAAGAAGCATGCAACACAAAGCTCCAACTAGGGCTTGGTGTGTGTGAATATGCTTCAAGGCAAGAGAAGAAGGATAATCCTCTGGTTTGCTTGGACCTATCATTTGCGCTTTGCCCGAAACAGGAGGTTCCTAATTTGGACGATCACATTGCAAATGGATCAAGCGTGAGGACAATGGATGTAGATGAAGAAAGTTATGAGAGAAGCATCGATCACACCAATAACAAGAGTGTTATCATGAACAACAAAAATGGTGTGAGAAAGAAACTGAGGCTCACAGAAGAGCAGTCCACCTTGTTGGAAGAGAGCTTCAACCGGCATAGCACCCTTAATCAGGTCCAGAAACAGTCACTTGCTGAGCAATTAAATCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAGTTGAAGCAAACAGAAGTAGACTGTGAGTTCTTAAAGAAATGTTGTGAAAGTCTAAGTGACGAGAATCGAAGGTTGAAGAAAGAGTTGCAGGAGTTGAAATCATTAAACGCGAACGGGACATCACCATTGTACATTCAGAAGGCTACAATGCCTCCGGTGTGCCTATCTTGTGAGAAAATGGTAAAAGCTCAGGAAAATAACCCAGCTGCTGCGACGAATGCAGAAGATCTCAATGTGGTCCGAAAGAGTAGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

231

Amino Acids

26.13

Weight (kDa)

6.83

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	91 - 145	1.2e-15	Homeodomain
HALZ	PF02183	147 - 180	2.1e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06590
malus_domestica	MD13G1236500.v1.1 MD16G1241700.v1.1
prunus_persica	Prupe.1G068400_v2.0.a1
pyrus_communis	pycom13g20920 pycom16g20240
rosa_chinensis	RchiOBHm_Chr4g0398491
rosa_laevigata	RLG00000009359
rosa_multiflora	Rmu_ssc0000240.1_g000024
rosa_roxburghii	Rroxscaffold_5G00343460
rosa_rugosa	Rorug04G0008800
rosa_samantha	Rh4AG086800 Rh4BG083400 Rh4CG094800 Rh4DG078200
rosa_wichuraiana	Rw4G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	453
AccII	CGCG	1 cut(s)	545
AclWI	GGATC	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	2 cut(s)	133, 346
AgsI	TTSAA	7 cut(s)	14, 69, 325, 401, 439, 511, 532
AluBI	AGCT	4 cut(s)	34, 321, 623, 641
AluI	AGCT	4 cut(s)	34, 321, 623, 641
AlwI	GGATC	1 cut(s)	178
AlwNI	CAGNNNCTG	1 cut(s)	644
ApeKI	GCWGC	2 cut(s)	641, 644
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	3 cut(s)	106, 349, 673
AsuHPI	GGTGA	2 cut(s)	17, 549
AvaII	GGWCC	3 cut(s)	106, 349, 673
BbvI	GCAGC	2 cut(s)	628, 631
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BfaI	CTAG	1 cut(s)	41
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	2 cut(s)	642, 645
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	2 cut(s)	643, 646
Bme18I	GGWCC	3 cut(s)	106, 349, 673
BmgT120I	GGNCC	3 cut(s)	106, 349, 673
BmiI	GGNNCC	1 cut(s)	141
BmsI	GCATC	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	369
Bsa29I	ATCGAT	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 346
Bse118I	RCCGGY	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	159
BseCI	ATCGAT	1 cut(s)	222
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	133, 346
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	3 cut(s)	272, 360, 638
BseXI	GCAGC	2 cut(s)	628, 631
BseYI	CCCAGC	1 cut(s)	637
Bsh1236I	CGCG	1 cut(s)	545
BshVI	ATCGAT	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	328, 590
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	2 cut(s)	133, 346
BsmFI	GGGAC	1 cut(s)	565
BsmI	GAATGC	1 cut(s)	658
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	4 cut(s)	154, 170, 223, 661
Bsp1720I	GCTNAGC	1 cut(s)	369
BspCNI	CTCAG	3 cut(s)	273, 361, 637
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	545
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	178
BspQI	GCTCTTC	2 cut(s)	288, 415
BsrDI	GCAATG	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	327
BsrGI	TGTACA	1 cut(s)	564
BssAI	RCCGGY	1 cut(s)	327
BssMI	GATC	4 cut(s)	154, 170, 223, 661
Bst4CI	ACNGT	2 cut(s)	360, 458
Bst6I	CTCTTC	3 cut(s)	288, 309, 415
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	4 cut(s)	281, 369, 488, 624
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	545
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	4 cut(s)	157, 173, 226, 664
BstMBI	GATC	4 cut(s)	154, 170, 223, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstNSI	RCATGY	1 cut(s)	24
BstUI	CGCG	1 cut(s)	545
BstV1I	GCAGC	2 cut(s)	628, 631
BstX2I	RGATCY	1 cut(s)	661
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	661
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	22
CaiI	CAGNNNCTG	1 cut(s)	644
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	3 cut(s)	106, 349, 673
ClaI	ATCGAT	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	2 cut(s)	21, 250
CviJI	RGCY	8 cut(s)	34, 46, 286, 321, 388, 578, 623, 641
CviKI_1	RGCY	8 cut(s)	34, 46, 286, 321, 388, 578, 623, 641
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	4 cut(s)	281, 369, 488, 624
DpnI	GATC	4 cut(s)	156, 172, 225, 663
DpnII	GATC	4 cut(s)	154, 170, 223, 661
Eam1104I	CTCTTC	3 cut(s)	288, 309, 415
EarI	CTCTTC	3 cut(s)	288, 309, 415
Eco47I	GGWCC	3 cut(s)	106, 349, 673
Eco57I	CTGAAG	1 cut(s)	404
EcoNI	CCTNNNNNAGG	1 cut(s)	344
FaeI	CATG	2 cut(s)	24, 253
FaiI	YATR	5 cut(s)	22, 63, 210, 251, 333
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	2 cut(s)	20, 249
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	642, 645
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	642, 645
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	2 cut(s)	642, 645
GsaI	CCCAGC	1 cut(s)	641
HapII	CCGG	2 cut(s)	328, 590
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	2 cut(s)	24, 253
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	1 cut(s)	499
HpaII	CCGG	2 cut(s)	328, 590
HphI	GGTGA	2 cut(s)	17, 549
Hpy166II	GTNNAC	2 cut(s)	303, 454
Hpy188I	TCNGA	4 cut(s)	384, 414, 573, 677
Hpy188III	TCNNGA	3 cut(s)	250, 352, 626
Hpy8I	GTNNAC	2 cut(s)	303, 454
Hpy99I	CGWCG	1 cut(s)	652
HpyAV	CCTTC	3 cut(s)	76, 498, 568
HpyCH4III	ACNGT	2 cut(s)	360, 458
HpyCH4V	TGCA	4 cut(s)	24, 164, 523, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpyF3I	CTNAG	4 cut(s)	281, 369, 488, 624
Hsp92II	CATG	2 cut(s)	24, 253
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	4 cut(s)	154, 170, 223, 661
LguI	GCTCTTC	2 cut(s)	288, 415
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	9 cut(s)	80, 119, 332, 341, 365, 509, 603, 611, 651
Lsp1109I	GCAGC	2 cut(s)	628, 631
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	360, 491
MalI	GATC	4 cut(s)	156, 172, 225, 663
MboI	GATC	4 cut(s)	154, 170, 223, 661
MboII	GAAGA	8 cut(s)	26, 91, 212, 305, 326, 432, 523, 671
MflI	RGATCY	1 cut(s)	661
MluCI	AATT	3 cut(s)	145, 374, 688
MmeI	TCCRAC	2 cut(s)	61, 291
MnlI	CCTC	5 cut(s)	102, 130, 174, 276, 597
MseI	TTAA	5 cut(s)	342, 377, 467, 539, 691
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	2 cut(s)	328, 590
Mva1269I	GAATGC	1 cut(s)	658
MvnI	CGCG	1 cut(s)	545
MwoI	GCNNNNNNNGC	1 cut(s)	653
NdeII	GATC	4 cut(s)	154, 170, 223, 661
NlaIII	CATG	2 cut(s)	24, 253
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	2 cut(s)	360, 491
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PagI	TCATGA	1 cut(s)	249
PciSI	GCTCTTC	2 cut(s)	288, 415
PctI	GAATGC	1 cut(s)	658
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	2 cut(s)	643, 646
PspFI	CCCAGC	1 cut(s)	637
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	3 cut(s)	106, 349, 673
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	661
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
SapI	GCTCTTC	2 cut(s)	288, 415
SaqAI	TTAA	5 cut(s)	342, 377, 467, 539, 691
SatI	GCNGC	2 cut(s)	642, 645
Sau3AI	GATC	4 cut(s)	154, 170, 223, 661
Sau96I	GGNCC	3 cut(s)	106, 349, 673
SetI	ASST	9 cut(s)	36, 111, 141, 308, 323, 351, 509, 625, 643
SfaNI	GCATC	1 cut(s)	228
SinI	GGWCC	3 cut(s)	106, 349, 673
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	3 cut(s)	145, 374, 688
SspMI	CTAG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	360, 458
TaqI	TCGA	2 cut(s)	222, 502
TasI	AATT	3 cut(s)	145, 374, 688
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	5 cut(s)	342, 377, 467, 539, 691
Tru9I	TTAA	5 cut(s)	342, 377, 467, 539, 691
TseFI	GTSAC	2 cut(s)	360, 491
TseI	GCWGC	2 cut(s)	641, 644
Tsp45I	GTSAC	2 cut(s)	360, 491
TspDTI	ATGAA	2 cut(s)	213, 266
VpaK11BI	GGWCC	3 cut(s)	106, 349, 673
XagI	CCTNNNNNAGG	1 cut(s)	344
XceI	RCATGY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	453
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.