Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015593

Physical Location & Seq

Genomic Coordinates Forward (+)

17915143 .. 17916250

Gene Structure 1108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGTGATGTTGAAGAAGCATGCAACACAAAGCTCCAACTAGGGCTTGGTGTGTGTGAATATGCTTCAAGGCAAGAGAAGAAGGATAATCCTCTGGTTTGCTTGGACCTATCATTTGCGCTTTGCCCGAAACAGGAGGTTCCTAATTTGGACGATCACATCCCAAATGGATCAAGCGTGAGGACCATGGATGAAGATGAAGAGAGTTATGAGAGAAGCATCGATCACACCAATAACAAGGGTGTTATCATGAACAACAAAAATGGTGTGAGAAAGAAGCTGAGGCTCACAAAAGAGCAGTCCACCTTGTTGGAAGAGAGCTTCAACCGGCATAACACCCTTAATCAGGTCCAGAAACAGTCACTTGCTGAGCAATTAAATCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAGTTGAAGCAAACAGAAGTAGACTGTGAGTTCTTAAAGAAATGTTGTGAAAGTCTAAGTGATGAGAATCGAAGGTTGAAGAAAGAGTTGCAGGAGTTGAAATCATTAAATGCGAACGGAACATCACCATTGTACATTCAGATTCCAAAGGCTACAATGCCTCCGGTGTGCCCATCTTGTGAGAAAATGGTAAAAGCTCATGAAAATAACCCAGCTGCTGCAAAGAATGCAGAAGATCTCAATGTGGTCCGAAAGAGTAGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

233

Amino Acids

26.41

Weight (kDa)

8.02

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06590
malus_domestica	MD13G1236500.v1.1 MD16G1241700.v1.1
prunus_persica	Prupe.1G068400_v2.0.a1
pyrus_communis	pycom13g20920 pycom16g20240
rosa_chinensis	RchiOBHm_Chr4g0398491
rosa_laevigata	RLG00000009359
rosa_multiflora	Rmu_ssc0000240.1_g000024
rosa_roxburghii	Rroxscaffold_5G00343460
rosa_rugosa	Rorug04G0008800
rosa_samantha	Rh4AG086800 Rh4BG083400 Rh4CG094800 Rh4DG078200
rosa_wichuraiana	Rw4G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	453
AclWI	GGATC	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	2 cut(s)	133, 346
AgsI	TTSAA	7 cut(s)	14, 69, 325, 401, 439, 511, 532
AluBI	AGCT	5 cut(s)	34, 280, 321, 629, 647
AluI	AGCT	5 cut(s)	34, 280, 321, 629, 647
AlwI	GGATC	1 cut(s)	178
AlwNI	CAGNNNCTG	1 cut(s)	650
ApeKI	GCWGC	2 cut(s)	647, 650
ArsI	GACNNNNNNTTYG	4 cut(s)	98, 130, 284, 316
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	4 cut(s)	106, 183, 349, 679
AsuHPI	GGTGA	2 cut(s)	17, 549
AvaII	GGWCC	4 cut(s)	106, 183, 349, 679
BaeGI	GKGCMC	1 cut(s)	605
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	634, 637
BccI	CCATC	1 cut(s)	613
BfaI	CTAG	1 cut(s)	41
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	2 cut(s)	648, 651
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	2 cut(s)	649, 652
Bme18I	GGWCC	4 cut(s)	106, 183, 349, 679
BmgT120I	GGNCC	4 cut(s)	106, 183, 349, 679
BmiI	GGNNCC	1 cut(s)	141
BmsI	GCATC	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	281
Bpu1102I	GCTNAGC	1 cut(s)	369
Bsa29I	ATCGAT	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	595
BsaXI	ACNNNNNCTCC	2 cut(s)	577, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 346
Bse118I	RCCGGY	1 cut(s)	327
Bse8I	GATNNNNATC	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	159, 196
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	133, 346
BseMII	CTCAG	2 cut(s)	272, 360
BseSI	GKGCMC	1 cut(s)	605
BseXI	GCAGC	2 cut(s)	634, 637
BseYI	CCCAGC	1 cut(s)	643
BshVI	ATCGAT	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	328, 596
BslI	CCNNNNNNNGG	2 cut(s)	133, 346
BsmI	GAATGC	1 cut(s)	664
Bsp1286I	GDGCHC	1 cut(s)	605
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	4 cut(s)	154, 170, 223, 667
Bsp1720I	GCTNAGC	1 cut(s)	369
Bsp19I	CCATGG	1 cut(s)	186
BspCNI	CTCAG	2 cut(s)	273, 361
BspDI	ATCGAT	1 cut(s)	222
BspHI	TCATGA	2 cut(s)	249, 631
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	327
BsrGI	TGTACA	1 cut(s)	564
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	4 cut(s)	154, 170, 223, 667
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	360, 458
Bst6I	CTCTTC	3 cut(s)	195, 309, 415
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	3 cut(s)	281, 369, 488
BstDSI	CCRYGG	1 cut(s)	186
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	159, 196
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	4 cut(s)	157, 173, 226, 670
BstMBI	GATC	4 cut(s)	154, 170, 223, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	659
BstNSI	RCATGY	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	605
BstV1I	GCAGC	2 cut(s)	634, 637
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	667
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	159, 196
Cac8I	GCNNGC	1 cut(s)	22
CaiI	CAGNNNCTG	1 cut(s)	650
CciI	TCATGA	2 cut(s)	249, 631
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	4 cut(s)	106, 183, 349, 679
ClaI	ATCGAT	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	4 cut(s)	21, 187, 250, 632
CviJI	RGCY	9 cut(s)	34, 46, 280, 286, 321, 388, 584, 629, 647
CviKI_1	RGCY	9 cut(s)	34, 46, 280, 286, 321, 388, 584, 629, 647
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	3 cut(s)	281, 369, 488
DpnI	GATC	4 cut(s)	156, 172, 225, 669
DpnII	GATC	4 cut(s)	154, 170, 223, 667
Eam1104I	CTCTTC	3 cut(s)	195, 309, 415
EarI	CTCTTC	3 cut(s)	195, 309, 415
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	4 cut(s)	106, 183, 349, 679
Eco57I	CTGAAG	1 cut(s)	404
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	4 cut(s)	24, 190, 253, 635
FaiI	YATR	7 cut(s)	22, 63, 188, 210, 251, 333, 633
FatI	CATG	4 cut(s)	20, 186, 249, 631
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	648, 651
FokI	GGATG	2 cut(s)	146, 203
Fsp4HI	GCNGC	2 cut(s)	648, 651
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	2 cut(s)	648, 651
GsaI	CCCAGC	1 cut(s)	647
HapII	CCGG	2 cut(s)	328, 596
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	4 cut(s)	24, 190, 253, 635
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	2 cut(s)	499, 574
HpaII	CCGG	2 cut(s)	328, 596
HphI	GGTGA	2 cut(s)	17, 549
Hpy166II	GTNNAC	2 cut(s)	303, 454
Hpy188I	TCNGA	4 cut(s)	384, 414, 573, 683
Hpy188III	TCNNGA	3 cut(s)	250, 352, 632
Hpy8I	GTNNAC	2 cut(s)	303, 454
HpyAV	CCTTC	2 cut(s)	76, 498
HpyCH4III	ACNGT	2 cut(s)	360, 458
HpyCH4V	TGCA	4 cut(s)	24, 523, 653, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	659
HpyF3I	CTNAG	3 cut(s)	281, 369, 488
Hsp92II	CATG	4 cut(s)	24, 190, 253, 635
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	4 cut(s)	154, 170, 223, 667
LguI	GCTCTTC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	8 cut(s)	80, 119, 332, 341, 365, 509, 609, 657
Lsp1109I	GCAGC	2 cut(s)	634, 637
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	4 cut(s)	156, 172, 225, 669
MboI	GATC	4 cut(s)	154, 170, 223, 667
MboII	GAAGA	8 cut(s)	26, 91, 206, 212, 326, 432, 523, 677
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	1 cut(s)	605
MluCI	AATT	3 cut(s)	145, 374, 694
MmeI	TCCRAC	2 cut(s)	61, 291
MnlI	CCTC	5 cut(s)	102, 130, 174, 276, 603
MseI	TTAA	5 cut(s)	342, 377, 467, 539, 697
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	2 cut(s)	328, 596
Mva1269I	GAATGC	1 cut(s)	664
MwoI	GCNNNNNNNGC	1 cut(s)	659
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	4 cut(s)	154, 170, 223, 667
NlaIII	CATG	4 cut(s)	24, 190, 253, 635
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	360
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PagI	TCATGA	2 cut(s)	249, 631
PciSI	GCTCTTC	1 cut(s)	415
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	2 cut(s)	499, 574
PkrI	GCNGC	2 cut(s)	649, 652
PspFI	CCCAGC	1 cut(s)	643
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	4 cut(s)	106, 183, 349, 679
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	667
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
SapI	GCTCTTC	1 cut(s)	415
SaqAI	TTAA	5 cut(s)	342, 377, 467, 539, 697
SatI	GCNGC	2 cut(s)	648, 651
Sau3AI	GATC	4 cut(s)	154, 170, 223, 667
Sau96I	GGNCC	4 cut(s)	106, 183, 349, 679
SduI	GDGCHC	1 cut(s)	605
SfaNI	GCATC	1 cut(s)	228
SinI	GGWCC	4 cut(s)	106, 183, 349, 679
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	3 cut(s)	145, 374, 694
SspMI	CTAG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	360, 458
TaqI	TCGA	2 cut(s)	222, 502
TasI	AATT	3 cut(s)	145, 374, 694
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	2 cut(s)	499, 574
Tru1I	TTAA	5 cut(s)	342, 377, 467, 539, 697
Tru9I	TTAA	5 cut(s)	342, 377, 467, 539, 697
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	2 cut(s)	647, 650
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	4 cut(s)	207, 213, 266, 648
TspGWI	ACGGA	1 cut(s)	564
VpaK11BI	GGWCC	4 cut(s)	106, 183, 349, 679
XagI	CCTNNNNNAGG	1 cut(s)	344
XceI	RCATGY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	453
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.