Rorug04G0008800

Protein trichome birefringence-like 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008805
Physical Location & Seq
Reverse (-)
1438810 .. 1440690
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0008800.1

Sequence Viewer

Length: 342 bp
ATGCATTGCGGGGATGATTACAAGATCAAGGTGTGGAATTATAAGTTGCATAGGTGCCTGTTTACTCTTCTTGGACACCTTGATTACATCCGTACTGTTCAATTCCATCATGAGTACCCTTGGATTGTGAGTGCCAGTGATGACCAGACTATCAGAATATGGAATTGGCAGTCCCGGACTTGTATTTCTGTGCTCACTGGACACAACCATTACGTCATGTGTGCCTTGTTCCATCCCGAGGAGGATCTTGTTGTCTCAGCATCATTGGATCAAACTGTTCGTGTTTGGGATATTGGTGCACTCAGGAAGAAAACGGTTGCGCCTGCAGATGACATCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

113

Amino Acids

13.27

Weight (kDa)

6.42

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 3 - 100 1.4e-29 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 3 - 98 2.2e-22 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 3 - 64 4.5e-08 WDHD1 first WD40 domain
Beta-prop_WDR3_2nd PF25172 3 - 97 1.2e-12 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 3 - 100 3.3e-19 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 4 - 99 6e-13 WDR36/Utp21 second beta-propeller domain
Beta-prop_SCAP PF24017 5 - 98 1e-05 SCAP Beta-propeller
WDR55 PF24796 5 - 100 3.1e-08 WDR55
WD40_CDC20-Fz PF24807 6 - 96 1.4e-08 CDC20/Fizzy WD40 domain
Beta-prop_EML PF23409 7 - 86 1.9e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 8 - 96 9.8e-06 WDR36/Utp21 first beta-propeller
WD40 PF00400 18 - 55 9.5e-10 WD domain, G-beta repeat
EIF3I PF24805 22 - 98 3.3e-07 EIF3I
Beta-prop_CAF1B_HIR1 PF24105 22 - 100 5.8e-09 CAF1B/HIR1 beta-propeller domain
WD40_Gbeta PF25391 22 - 99 1.9e-07 G protein beta WD-40 repeat protein
Beta-prop_EIPR1 PF23609 24 - 96 1.9e-08 EIPR1 beta-propeller
WD40_WDHD1_1st PF24817 30 - 99 3.4e-13 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 42 - 101 7.6e-14 THOC3 beta-propeller domain
WD40 PF00400 60 - 97 1.4e-10 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 54
AciI CCGC 1 cut(s) 9
AclWI GGATC 2 cut(s) 252, 276
AfaI GTAC 2 cut(s) 94, 116
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 148, 180
Alw21I GWGCWC 2 cut(s) 195, 301
Alw26I GTCTC 1 cut(s) 259
Alw44I GTGCAC 1 cut(s) 297
AlwI GGATC 2 cut(s) 252, 276
Ama87I CYCGRG 1 cut(s) 236
ApaLI GTGCAC 1 cut(s) 297
AspLEI GCGC 1 cut(s) 322
AsuC2I CCSGG 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 301
BanI GGYRCC 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 195, 301
BccI CCATC 2 cut(s) 114, 240
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 259
BfmI CTRYAG 1 cut(s) 324
Bme1390I CCNGG 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 119, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 135, 202
Bse3DI GCAATG 1 cut(s) 4
BseDI CCNNGG 2 cut(s) 119, 237
BseGI GGATG 4 cut(s) 19, 87, 232, 333
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 4
BseMII CTCAG 2 cut(s) 270, 316
BseNI ACTGG 2 cut(s) 135, 202
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 301
BshNI GGYRCC 1 cut(s) 54
BsiHKAI GWGCWC 2 cut(s) 195, 301
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 175
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 195, 301
Bsp143I GATC 3 cut(s) 24, 244, 268
BspACI CCGC 1 cut(s) 9
BspCNI CTCAG 2 cut(s) 269, 315
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 56
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 2 cut(s) 252, 276
BspT107I GGYRCC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 4
BsrI ACTGG 2 cut(s) 135, 202
BssECI CCNNGG 2 cut(s) 119, 237
BssMI GATC 3 cut(s) 24, 244, 268
BssT1I CCWWGG 1 cut(s) 119
Bst4CI ACNGT 3 cut(s) 97, 277, 316
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 2 cut(s) 256, 302
BstF5I GGATG 4 cut(s) 19, 87, 232, 333
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 3 cut(s) 27, 247, 271
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 3 cut(s) 24, 244, 268
BstSCI CCNGG 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BtsCI GGATG 4 cut(s) 19, 87, 232, 333
BtsIMutI CAGTG 2 cut(s) 142, 195
Cac8I GCNNGC 1 cut(s) 324
CciI TCATGA 1 cut(s) 109
CfoI GCGC 1 cut(s) 322
Csp6I GTAC 2 cut(s) 93, 115
CviAII CATG 2 cut(s) 110, 217
CviQI GTAC 2 cut(s) 93, 115
DdeI CTNAG 2 cut(s) 256, 302
DpnI GATC 3 cut(s) 26, 246, 270
DpnII GATC 3 cut(s) 24, 244, 268
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 119
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 2 cut(s) 113, 220
FaiI YATR 6 cut(s) 42, 51, 111, 160, 218, 340
FaqI GGGAC 1 cut(s) 157
FatI CATG 2 cut(s) 109, 216
FauI CCCGC 1 cut(s) 2
FokI GGATG 4 cut(s) 26, 74, 219, 320
GlaI GCGC 1 cut(s) 321
HapII CCGG 1 cut(s) 175
HhaI GCGC 1 cut(s) 322
Hin1II CATG 2 cut(s) 113, 220
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HpaII CCGG 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 63, 299
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 3 cut(s) 110, 236, 304
Hpy8I GTNNAC 2 cut(s) 63, 299
HpyCH4III ACNGT 3 cut(s) 97, 277, 316
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 4 cut(s) 4, 49, 299, 326
HpyF3I CTNAG 2 cut(s) 256, 302
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 2 cut(s) 113, 220
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 3 cut(s) 24, 244, 268
LpnPI CCDG 7 cut(s) 71, 148, 158, 183, 188, 289, 336
LweI GCATC 1 cut(s) 269
MaeII ACGT 1 cut(s) 213
MalI GATC 3 cut(s) 26, 246, 270
MboI GATC 3 cut(s) 24, 244, 268
MboII GAAGA 2 cut(s) 59, 319
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 2 cut(s) 195, 301
MluCI AATT 3 cut(s) 37, 101, 163
MnlI CCTC 2 cut(s) 232, 235
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 175
NciI CCSGG 1 cut(s) 175
NdeII GATC 3 cut(s) 24, 244, 268
NlaIII CATG 2 cut(s) 113, 220
NlaIV GGNNCC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 109
PfoI TCCNGGA 1 cut(s) 173
PsiI TTATAA 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 56
PstI CTGCAG 1 cut(s) 328
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 2 cut(s) 94, 116
RsaNI GTAC 2 cut(s) 93, 115
Sau3AI GATC 3 cut(s) 24, 244, 268
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 2 cut(s) 195, 301
SetI ASST 4 cut(s) 33, 56, 81, 216
SfaNI GCATC 1 cut(s) 269
SfcI CTRYAG 1 cut(s) 324
Sse9I AATT 3 cut(s) 37, 101, 163
SsiI CCGC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 173
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 3 cut(s) 97, 277, 316
TaiI ACGT 1 cut(s) 216
TasI AATT 3 cut(s) 37, 101, 163
TscAI CASTG 2 cut(s) 142, 202
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 2 cut(s) 142, 202
VneI GTGCAC 1 cut(s) 297
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.