FvH4_4g06600

Protein trichome birefringence-like 5

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
5890249 .. 5894783
4535 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06600.t1

Sequence Viewer

Length: 1482 bp
ATGGCAGTAGCAACACCCAGTAATTCATCCCCCCAAAAGAGCCGTTACGCCTTCATCGTTATCATATTCATCACCTTCTTCCTCTTCACCGTTTTCGTCTTCACCAAACGAGCCCTTGAGCCCTCTCTCTTCCTCTACAAGAATCACTTTACCCAAATCCCATTTTCTTCTTCTTCAACTAACAATACCCTCATCTCTTTGTCCCAATCCAACTCTGCACCAATACTAGACCCACCTTCTTCTTTGCTCCAATCCACCTCTATAACACCACCAACCCAAGAACCCAGTTCACAAAGTGAGTCCAATGATGAAAACGTGCAAGACCCAGATCGTGAAAATGAAAATGTGCAAGACCCAGATGGTGGAAATGAGAGCTCAGACCTGAAGGAGTCCAGTGACCAAAATGGTGGTGAAAATGAGAACCCAGATGTTGAAACGGGTGAAATTCCGTGTGATTTGTATGCTGGAACTTGGGTGAGAGATGAGCAATACCCGCTTTATAAACCGGGTTCATGCCCTCATGTTGATGAAGCTTTTGATTGCCAGAGCAATGGGAGGGGCGACTCTGAGTATCTAAAATGGCGGTGGAAACCTGATGGCTGTGACCTTCCAAGGTTTAATGCAACAGACTTTTTGGTGAGGCTACGGGGTAAAAGGTTGATGCTTGTAGGGGATTCCATGAATCGGAACCAGTTTGAGTCAATATTATGCCTCCTCCGAGAAGGCTTGCATAATAAGAGCAGAATGTATGAGATCCATGGCCACAAAATATCCAAGGGAAGAGGCTATTTTTCTTTCAAATTCCAGGACTATGACTGTACGGTGGATTTTGTGTTATCACATTTCCTTGTGAAAGAAGGAGTCCGATTTGATGAGAAAAGGAGGTCAAATCCAACTCTATCGATTGATCAAATTGACAGAAAAGCTAAACGTTGGATGAAGGCTGACATTCTAGTCTTTAATACTGGACATTGGTGGGCTCATGGAAAGACTGCTCGCGGGAAAAACTACTACAAAGAAGGAGATTATCTCTATCCACATTTTGATGTAACTGAGGCCTTTAGACGGGCCCTGAAGACCTGGGCTAGCTGGGTTGACCTTAATGTGAATCCAAAAAAGCAGTTGATCTTCTATCGTGGCTACTCGTCTTCACATTTCAGAGGTGGAGATTGGGATTCAGGTGGGTCATGCAAAGGGGAAAAAGAACCAGCCTTCTCTGGGGCCTTACTGGATAGCTACCCTTTGAAAATGAAGATAGTGGATGAAGTAATCAAAGAAATGAAGGTTCCGGTGATACTATTGAATGTGACAAGGTTGACCAATTTCCGCAAGGATGGCCATCCATCAATCTGGGGTAAGAAAGGTTCCTCCAGGAAGCAAGACTGCAGCCATTGGTGTGTTCCTGGAGTCCCTGATGCATGGAATGAGCTCATCTATTCCACTCTGGTTTTCCAGCAGACCAAATCAAAGAGTAAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

494

Amino Acids

56.3

Weight (kDa)

7.58

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 151 - 202 2.7e-22 PMR5 N terminal Domain
PC-Esterase PF13839 203 - 480 7.2e-95 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AasI GACNNNNNNGTC 1 cut(s) 953
AccB7I CCANNNNNTGG 1 cut(s) 362
AccII CGCG 1 cut(s) 999
AciI CCGC 4 cut(s) 494, 583, 999, 1327
AclI AACGTT 1 cut(s) 931
AclWI GGATC 1 cut(s) 748
AcoI YGGCCR 2 cut(s) 760, 1336
AcsI RAATTY 2 cut(s) 444, 800
AcuI CTGAAG 2 cut(s) 404, 1094
AdeI CACNNNGTG 1 cut(s) 296
AfaI GTAC 1 cut(s) 820
AfiI CCNNNNNNNGG 4 cut(s) 362, 684, 1065, 1218
AgsI TTSAA 5 cut(s) 177, 434, 799, 1246, 1303
AjnI CCWGG 4 cut(s) 804, 1079, 1370, 1402
AluBI AGCT 6 cut(s) 375, 533, 926, 1089, 1236, 1429
AluI AGCT 6 cut(s) 375, 533, 926, 1089, 1236, 1429
Alw21I GWGCWC 2 cut(s) 377, 1431
AlwI GGATC 1 cut(s) 748
AoxI GGCC 5 cut(s) 760, 1056, 1068, 1221, 1336
ApaI GGGCCC 1 cut(s) 1072
ApeKI GCWGC 1 cut(s) 1386
ApoI RAATTY 2 cut(s) 444, 800
AspS9I GGNCC 3 cut(s) 1068, 1069, 1221
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 8 cut(s) 64, 79, 94, 422, 452, 487, 649, 1303
AsuNHI GCTAGC 1 cut(s) 1085
BaeGI GKGCMC 1 cut(s) 1072
BalI TGGCCA 2 cut(s) 762, 1338
BanII GRGCYC 6 cut(s) 115, 123, 377, 982, 1072, 1431
BbsI GAAGAC 3 cut(s) 91, 1082, 1140
Bbv12I GWGCWC 2 cut(s) 377, 1431
BbvI GCAGC 1 cut(s) 1398
BccI CCATC 5 cut(s) 353, 590, 1328, 1347, 1351
BceAI ACGGC 1 cut(s) 27
BciT130I CCWGG 4 cut(s) 806, 1081, 1372, 1404
BclI TGATCA 1 cut(s) 907
BcnI CCSGG 1 cut(s) 507
BfaI CTAG 3 cut(s) 227, 953, 1086
BfmI CTRYAG 1 cut(s) 1384
BisI GCNGC 1 cut(s) 1387
BlsI GCNGC 1 cut(s) 1388
Bme1390I CCNGG 5 cut(s) 507, 806, 1081, 1372, 1404
BmgT120I GGNCC 3 cut(s) 1068, 1069, 1221
BmiI GGNNCC 5 cut(s) 689, 1070, 1222, 1287, 1366
BmrFI CCNGG 5 cut(s) 507, 806, 1081, 1372, 1404
BmrI ACTGGG 2 cut(s) 12, 279
BmsI GCATC 2 cut(s) 651, 1405
BmtI GCTAGC 1 cut(s) 1089
BmuI ACTGGG 2 cut(s) 12, 279
BpiI GAAGAC 3 cut(s) 91, 1082, 1140
BplI GAGNNNNNCTC 2 cut(s) 1014, 1046
BpmI CTGGAG 2 cut(s) 1354, 1425
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 507
Bsa29I ATCGAT 1 cut(s) 902
BsaBI GATNNNNATC 1 cut(s) 1338
BsaJI CCNNGG 4 cut(s) 611, 757, 774, 1080
BsaWI WCCGGW 1 cut(s) 1288
Bsc4I CCNNNNNNNGG 4 cut(s) 362, 684, 1065, 1218
Bse1I ACTGG 6 cut(s) 18, 285, 393, 691, 970, 1233
Bse3DI GCAATG 1 cut(s) 556
Bse8I GATNNNNATC 1 cut(s) 1338
BseBI CCWGG 4 cut(s) 806, 1081, 1372, 1404
BseCI ATCGAT 1 cut(s) 902
BseDI CCNNGG 4 cut(s) 611, 757, 774, 1080
BseGI GGATG 5 cut(s) 26, 942, 1267, 1339, 1339
BseJI GATNNNNATC 1 cut(s) 1338
BseLI CCNNNNNNNGG 4 cut(s) 362, 684, 1065, 1218
BseMI GCAATG 1 cut(s) 556
BseMII CTCAG 3 cut(s) 390, 558, 1044
BseNI ACTGG 6 cut(s) 18, 285, 393, 691, 970, 1233
BseRI GAGGAG 1 cut(s) 704
BseSI GKGCMC 1 cut(s) 1072
BseXI GCAGC 1 cut(s) 1398
BseYI CCCAGC 1 cut(s) 1089
BsgI GTGCAG 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 999
BshFI GGCC 5 cut(s) 762, 1058, 1070, 1223, 1338
BshVI ATCGAT 1 cut(s) 902
BsiHKAI GWGCWC 2 cut(s) 377, 1431
BsiSI CCGG 2 cut(s) 506, 1289
BslFI GGGAC 2 cut(s) 187, 1394
BslI CCNNNNNNNGG 4 cut(s) 362, 684, 1065, 1218
BsmFI GGGAC 2 cut(s) 187, 1394
BsnI GGCC 5 cut(s) 762, 1058, 1070, 1223, 1338
Bsp120I GGGCCC 1 cut(s) 1068
Bsp1286I GDGCHC 6 cut(s) 115, 123, 377, 982, 1072, 1431
Bsp143I GATC 4 cut(s) 328, 753, 907, 1125
Bsp19I CCATGG 1 cut(s) 757
BspACI CCGC 4 cut(s) 494, 583, 999, 1327
BspANI GGCC 5 cut(s) 762, 1058, 1070, 1223, 1338
BspCNI CTCAG 3 cut(s) 389, 559, 1045
BspDI ATCGAT 1 cut(s) 902
BspFNI CGCG 1 cut(s) 999
BspLI GGNNCC 5 cut(s) 689, 1070, 1222, 1287, 1366
BspMAI CTGCAG 1 cut(s) 1388
BspOI GCTAGC 1 cut(s) 1089
BspPI GGATC 1 cut(s) 748
BsrDI GCAATG 1 cut(s) 556
BsrI ACTGG 6 cut(s) 18, 285, 393, 691, 970, 1233
BssECI CCNNGG 4 cut(s) 611, 757, 774, 1080
BssMI GATC 4 cut(s) 328, 753, 907, 1125
BssT1I CCWWGG 3 cut(s) 611, 757, 774
Bst2UI CCWGG 4 cut(s) 806, 1081, 1372, 1404
Bst4CI ACNGT 3 cut(s) 91, 818, 823
Bst6I CTCTTC 3 cut(s) 89, 134, 775
BstC8I GCNNGC 3 cut(s) 728, 997, 1087
BstDEI CTNAG 3 cut(s) 376, 567, 1053
BstDSI CCRYGG 1 cut(s) 757
BstF5I GGATG 5 cut(s) 26, 942, 1267, 1339, 1339
BstFNI CGCG 1 cut(s) 999
BstKTI GATC 4 cut(s) 331, 756, 910, 1128
BstMBI GATC 4 cut(s) 328, 753, 907, 1125
BstMWI GCNNNNNNNGC 2 cut(s) 493, 1335
BstNI CCWGG 4 cut(s) 806, 1081, 1372, 1404
BstSCI CCNGG 5 cut(s) 505, 804, 1079, 1370, 1402
BstSFI CTRYAG 1 cut(s) 1384
BstSLI GKGCMC 1 cut(s) 1072
BstUI CGCG 1 cut(s) 999
BstV1I GCAGC 1 cut(s) 1398
BstV2I GAAGAC 3 cut(s) 91, 1082, 1140
BstX2I RGATCY 1 cut(s) 753
BstXI CCANNNNNNTGG 3 cut(s) 407, 551, 1350
BstYI RGATCY 1 cut(s) 753
Bsu15I ATCGAT 1 cut(s) 902
BsuRI GGCC 5 cut(s) 762, 1058, 1070, 1223, 1338
BsuTUI ATCGAT 1 cut(s) 902
BtgI CCRYGG 1 cut(s) 757
BtsCI GGATG 5 cut(s) 26, 942, 1267, 1339, 1339
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 3 cut(s) 728, 997, 1087
Cfr13I GGNCC 3 cut(s) 1068, 1069, 1221
ClaI ATCGAT 1 cut(s) 902
Csp6I GTAC 1 cut(s) 819
CviAII CATG 7 cut(s) 513, 521, 679, 758, 983, 1188, 1419
CviQI GTAC 1 cut(s) 819
DdeI CTNAG 3 cut(s) 376, 567, 1053
DpnI GATC 4 cut(s) 330, 755, 909, 1127
DpnII GATC 4 cut(s) 328, 753, 907, 1125
DraIII CACNNNGTG 1 cut(s) 296
DrdI GACNNNNNNGTC 1 cut(s) 953
DseDI GACNNNNNNGTC 1 cut(s) 953
EaeI YGGCCR 2 cut(s) 760, 1336
Eam1104I CTCTTC 3 cut(s) 89, 134, 775
EarI CTCTTC 3 cut(s) 89, 134, 775
Ecl136II GAGCTC 2 cut(s) 375, 1429
Eco130I CCWWGG 3 cut(s) 611, 757, 774
Eco147I AGGCCT 1 cut(s) 1058
Eco24I GRGCYC 6 cut(s) 115, 123, 377, 982, 1072, 1431
Eco53kI GAGCTC 2 cut(s) 375, 1429
Eco57I CTGAAG 2 cut(s) 404, 1094
EcoICRI GAGCTC 2 cut(s) 375, 1429
EcoO109I RGGNCCY 2 cut(s) 1069, 1221
EcoRII CCWGG 4 cut(s) 804, 1079, 1370, 1402
EcoT14I CCWWGG 3 cut(s) 611, 757, 774
EcoT22I ATGCAT 1 cut(s) 1420
EcoT38I GRGCYC 6 cut(s) 115, 123, 377, 982, 1072, 1431
ErhI CCWWGG 3 cut(s) 611, 757, 774
FaeI CATG 7 cut(s) 516, 524, 682, 761, 986, 1191, 1422
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 2 cut(s) 187, 1394
FatI CATG 7 cut(s) 512, 520, 678, 757, 982, 1187, 1418
FauI CCCGC 2 cut(s) 501, 992
FbaI TGATCA 1 cut(s) 907
Fnu4HI GCNGC 1 cut(s) 1387
FokI GGATG 5 cut(s) 13, 949, 1274, 1326, 1346
FriOI GRGCYC 6 cut(s) 115, 123, 377, 982, 1072, 1431
Fsp4HI GCNGC 1 cut(s) 1387
FspBI CTAG 3 cut(s) 227, 953, 1086
GluI GCNGC 1 cut(s) 1387
GsaI CCCAGC 1 cut(s) 1093
GsuI CTGGAG 2 cut(s) 1354, 1425
HaeIII GGCC 5 cut(s) 762, 1058, 1070, 1223, 1338
HapII CCGG 2 cut(s) 506, 1289
Hin1II CATG 7 cut(s) 516, 524, 682, 761, 986, 1191, 1422
HincII GTYRAC 2 cut(s) 1096, 1317
HindII GTYRAC 2 cut(s) 1096, 1317
HindIII AAGCTT 1 cut(s) 531
HpaII CCGG 2 cut(s) 506, 1289
HphI GGTGA 8 cut(s) 64, 79, 94, 422, 452, 487, 649, 1303
Hpy166II GTNNAC 3 cut(s) 290, 1096, 1317
Hpy188I TCNGA 6 cut(s) 379, 568, 687, 719, 866, 1160
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 3 cut(s) 290, 1096, 1317
HpyCH4III ACNGT 3 cut(s) 91, 818, 823
HpyCH4IV ACGT 2 cut(s) 315, 931
HpyCH4V TGCA 8 cut(s) 218, 319, 349, 623, 730, 1191, 1386, 1418
HpyF10VI GCNNNNNNNGC 2 cut(s) 493, 1335
HpyF3I CTNAG 3 cut(s) 376, 567, 1053
HpySE526I ACGT 2 cut(s) 315, 931
Hsp92II CATG 7 cut(s) 516, 524, 682, 761, 986, 1191, 1422
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 4 cut(s) 328, 753, 907, 1125
LmnI GCTCC 1 cut(s) 252
Lsp1109I GCAGC 1 cut(s) 1398
LweI GCATC 2 cut(s) 651, 1405
MaeI CTAG 3 cut(s) 227, 953, 1086
MaeII ACGT 2 cut(s) 315, 931
MaeIII GTNAC 5 cut(s) 44, 395, 602, 1048, 1306
MalI GATC 4 cut(s) 330, 755, 909, 1127
MboI GATC 4 cut(s) 328, 753, 907, 1125
MflI RGATCY 1 cut(s) 753
MhlI GDGCHC 6 cut(s) 115, 123, 377, 982, 1072, 1431
MlsI TGGCCA 2 cut(s) 762, 1338
MluCI AATT 5 cut(s) 22, 444, 800, 912, 1321
MluNI TGGCCA 2 cut(s) 762, 1338
MlyI GAGTC 6 cut(s) 308, 398, 557, 707, 870, 1416
MmeI TCCRAC 3 cut(s) 234, 914, 917
Mox20I TGGCCA 2 cut(s) 762, 1338
Mph1103I ATGCAT 1 cut(s) 1420
MscI TGGCCA 2 cut(s) 762, 1338
MseI TTAA 3 cut(s) 618, 960, 1101
MslI CAYNNNNRTG 3 cut(s) 525, 1044, 1395
Msp20I TGGCCA 2 cut(s) 762, 1338
MspI CCGG 2 cut(s) 506, 1289
MspR9I CCNGG 5 cut(s) 507, 806, 1081, 1372, 1404
MvaI CCWGG 4 cut(s) 806, 1081, 1372, 1404
MvnI CGCG 1 cut(s) 999
MwoI GCNNNNNNNGC 2 cut(s) 493, 1335
NciI CCSGG 1 cut(s) 507
NcoI CCATGG 1 cut(s) 757
NdeII GATC 4 cut(s) 328, 753, 907, 1125
NheI GCTAGC 1 cut(s) 1085
NlaIII CATG 7 cut(s) 516, 524, 682, 761, 986, 1191, 1422
NlaIV GGNNCC 5 cut(s) 689, 1070, 1222, 1287, 1366
NmuCI GTSAC 3 cut(s) 395, 602, 1306
NsiI ATGCAT 1 cut(s) 1420
PceI AGGCCT 1 cut(s) 1058
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 5 cut(s) 142, 674, 682, 1108, 1175
PflMI CCANNNNNTGG 1 cut(s) 362
PfoI TCCNGGA 3 cut(s) 804, 1370, 1402
PkrI GCNGC 1 cut(s) 1388
PleI GAGTC 6 cut(s) 307, 397, 557, 706, 869, 1415
PpsI GAGTC 6 cut(s) 307, 397, 557, 706, 869, 1415
PsiI TTATAA 1 cut(s) 501
Psp124BI GAGCTC 2 cut(s) 377, 1431
Psp1406I AACGTT 1 cut(s) 931
Psp6I CCWGG 4 cut(s) 804, 1079, 1370, 1402
PspFI CCCAGC 1 cut(s) 1089
PspGI CCWGG 4 cut(s) 804, 1079, 1370, 1402
PspN4I GGNNCC 5 cut(s) 689, 1070, 1222, 1287, 1366
PspOMI GGGCCC 1 cut(s) 1068
PspPI GGNCC 3 cut(s) 1068, 1069, 1221
PsrI GAACNNNNNNTAC 2 cut(s) 1348, 1380
PstI CTGCAG 1 cut(s) 1388
PsuI RGATCY 1 cut(s) 753
RsaI GTAC 1 cut(s) 820
RsaNI GTAC 1 cut(s) 819
RseI CAYNNNNRTG 3 cut(s) 525, 1044, 1395
SacI GAGCTC 2 cut(s) 377, 1431
SaqAI TTAA 3 cut(s) 618, 960, 1101
SatI GCNGC 1 cut(s) 1387
Sau3AI GATC 4 cut(s) 328, 753, 907, 1125
Sau96I GGNCC 3 cut(s) 1068, 1069, 1221
SchI GAGTC 6 cut(s) 308, 398, 557, 707, 870, 1416
ScrFI CCNGG 5 cut(s) 507, 806, 1081, 1372, 1404
SduI GDGCHC 6 cut(s) 115, 123, 377, 982, 1072, 1431
SfaNI GCATC 2 cut(s) 651, 1405
SfcI CTRYAG 1 cut(s) 1384
SmiMI CAYNNNNRTG 3 cut(s) 525, 1044, 1395
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 5 cut(s) 22, 444, 800, 912, 1321
SseBI AGGCCT 1 cut(s) 1058
SsiI CCGC 4 cut(s) 494, 583, 999, 1327
SspI AATATT 1 cut(s) 705
SspMI CTAG 3 cut(s) 227, 953, 1086
SstI GAGCTC 2 cut(s) 377, 1431
StuI AGGCCT 1 cut(s) 1058
StyD4I CCNGG 5 cut(s) 505, 804, 1079, 1370, 1402
StyI CCWWGG 3 cut(s) 611, 757, 774
TaaI ACNGT 3 cut(s) 91, 818, 823
TaiI ACGT 2 cut(s) 318, 934
TaqI TCGA 1 cut(s) 902
TasI AATT 5 cut(s) 22, 444, 800, 912, 1321
TfiI GAWTC 5 cut(s) 142, 674, 682, 1108, 1175
Tru1I TTAA 3 cut(s) 618, 960, 1101
Tru9I TTAA 3 cut(s) 618, 960, 1101
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 3 cut(s) 395, 602, 1306
TseI GCWGC 1 cut(s) 1386
Tsp45I GTSAC 3 cut(s) 395, 602, 1306
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 1 cut(s) 400
Van91I CCANNNNNTGG 1 cut(s) 362
XapI RAATTY 2 cut(s) 444, 800
XspI CTAG 3 cut(s) 227, 953, 1086
Zsp2I ATGCAT 1 cut(s) 1420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.