Protein trichome birefringence-like 5
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G20590 AT5G20590 |
| fragaria_vesca | FvH4_4g06600 |
| malus_domestica | MD16G1241800.v1.1 |
| prunus_persica | Prupe.1G068600_v2.0.a1 Prupe.1G068600_v2.0.a1 |
| pyrus_communis | pycom16g20260 |
| rosa_chinensis | RchiOBHm_Chr4g0398501 RchiOBHm_Chr4g0398521 |
| rosa_laevigata | RLG00000009351 RLG00000009358 |
| rosa_multiflora | Rmu_sc0007985.1_g000006 Rmu_ssc0000240.1_g000023 |
| rosa_roxburghii | Rroxscaffold_5G00343470 Rroxscaffold_5G00343480 |
| rosa_rugosa | Rorug04G0008800 |
| rosa_samantha | Rh4AG086900 Rh4BG083500 Rh4CG094900 Rh4CG095000 Rh4DG078300 |
| rosa_wichuraiana | Rw4G007240 Rw4G007250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1221 |
| AccB1I | GGYRCC | 1 cut(s) | 638 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 755 |
| AccI | GTMKAC | 1 cut(s) | 591 |
| AccII | CGCG | 2 cut(s) | 853, 1095 |
| AciI | CCGC | 7 cut(s) | 809, 839, 851, 928, 1210, 1627, 1672 |
| AclI | AACGTT | 1 cut(s) | 1276 |
| AcoI | YGGCCR | 3 cut(s) | 1105, 1312, 1681 |
| AcsI | RAATTY | 3 cut(s) | 1145, 1172, 1839 |
| AfaI | GTAC | 1 cut(s) | 1165 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 580, 635, 755, 775, 1029, 1198 |
| AflII | CTTAAG | 1 cut(s) | 1558 |
| AgsI | TTSAA | 3 cut(s) | 1144, 1233, 1591 |
| AhlI | ACTAGT | 1 cut(s) | 95 |
| AjnI | CCWGG | 3 cut(s) | 748, 1191, 1765 |
| AluBI | AGCT | 6 cut(s) | 470, 587, 878, 1353, 1415, 1792 |
| AluI | AGCT | 6 cut(s) | 470, 587, 878, 1353, 1415, 1792 |
| Alw21I | GWGCWC | 3 cut(s) | 472, 1417, 1794 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 707 |
| Ama87I | CYCGRG | 2 cut(s) | 473, 1341 |
| AoxI | GGCC | 4 cut(s) | 1105, 1312, 1401, 1681 |
| ApeKI | GCWGC | 2 cut(s) | 1642, 1749 |
| ApoI | RAATTY | 3 cut(s) | 1145, 1172, 1839 |
| AseI | ATTAAT | 2 cut(s) | 1215, 1452 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 770, 1037 |
| AspLEI | GCGC | 2 cut(s) | 1095, 1222 |
| AspS9I | GGNCC | 1 cut(s) | 1771 |
| AsuHPI | GGTGA | 5 cut(s) | 421, 797, 832, 994, 1207 |
| AvaI | CYCGRG | 2 cut(s) | 473, 1341 |
| AvaII | GGWCC | 1 cut(s) | 1771 |
| AxyI | CCTNAGG | 1 cut(s) | 939 |
| BalI | TGGCCA | 2 cut(s) | 1314, 1683 |
| BanI | GGYRCC | 1 cut(s) | 638 |
| BanII | GRGCYC | 3 cut(s) | 472, 1417, 1794 |
| BbsI | GAAGAC | 2 cut(s) | 448, 1465 |
| Bbv12I | GWGCWC | 3 cut(s) | 472, 1417, 1794 |
| BbvI | GCAGC | 2 cut(s) | 1629, 1761 |
| BccI | CCATC | 7 cut(s) | 209, 275, 526, 755, 1465, 1673, 1692 |
| BceAI | ACGGC | 1 cut(s) | 1120 |
| BciT130I | CCWGG | 3 cut(s) | 750, 1193, 1767 |
| BclI | TGATCA | 2 cut(s) | 1441, 1614 |
| BcuI | ACTAGT | 1 cut(s) | 95 |
| BfaI | CTAG | 1 cut(s) | 96 |
| BfmI | CTRYAG | 4 cut(s) | 52, 588, 1405, 1747 |
| BfrI | CTTAAG | 1 cut(s) | 1558 |
| BglII | AGATCT | 1 cut(s) | 499 |
| BisI | GCNGC | 2 cut(s) | 1643, 1750 |
| BlsI | GCNGC | 2 cut(s) | 1644, 1751 |
| Bme1390I | CCNGG | 3 cut(s) | 750, 1193, 1767 |
| Bme18I | GGWCC | 1 cut(s) | 1771 |
| BmeT110I | CYCGRG | 2 cut(s) | 473, 1341 |
| BmgT120I | GGNCC | 1 cut(s) | 1771 |
| BmiI | GGNNCC | 7 cut(s) | 640, 669, 767, 1034, 1567, 1772, 1773 |
| BmrFI | CCNGG | 3 cut(s) | 750, 1193, 1767 |
| BmsI | GCATC | 4 cut(s) | 996, 1381, 1403, 1768 |
| BpiI | GAAGAC | 2 cut(s) | 448, 1465 |
| Bsa29I | ATCGAT | 2 cut(s) | 1687, 1691 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1581, 1683 |
| BsaJI | CCNNGG | 3 cut(s) | 748, 956, 1766 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 308, 338 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 580, 635, 755, 775, 1029, 1198 |
| Bse1I | ACTGG | 5 cut(s) | 1036, 1315, 1439, 1553, 1634 |
| Bse21I | CCTNAGG | 1 cut(s) | 939 |
| Bse3DI | GCAATG | 2 cut(s) | 901, 1543 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1581, 1683 |
| BseBI | CCWGG | 3 cut(s) | 750, 1193, 1767 |
| BseCI | ATCGAT | 2 cut(s) | 1687, 1691 |
| BseDI | CCNNGG | 3 cut(s) | 748, 956, 1766 |
| BseGI | GGATG | 4 cut(s) | 39, 374, 950, 1612 |
| BseJI | GATNNNNATC | 2 cut(s) | 1581, 1683 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 580, 635, 755, 775, 1029, 1198 |
| BseMI | GCAATG | 2 cut(s) | 901, 1543 |
| BseMII | CTCAG | 5 cut(s) | 729, 903, 953, 1389, 1409 |
| BseNI | ACTGG | 5 cut(s) | 1036, 1315, 1439, 1553, 1634 |
| BseRI | GAGGAG | 7 cut(s) | 548, 594, 597, 612, 615, 618, 680 |
| BseXI | GCAGC | 2 cut(s) | 1629, 1761 |
| Bsh1236I | CGCG | 2 cut(s) | 853, 1095 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1691 |
| BshFI | GGCC | 4 cut(s) | 1107, 1314, 1403, 1683 |
| BshNI | GGYRCC | 1 cut(s) | 638 |
| BshVI | ATCGAT | 2 cut(s) | 1687, 1691 |
| BsiEI | CGRYCG | 1 cut(s) | 1691 |
| BsiHKAI | GWGCWC | 3 cut(s) | 472, 1417, 1794 |
| BsiHKCI | CYCGRG | 2 cut(s) | 473, 1341 |
| BslFI | GGGAC | 2 cut(s) | 826, 1757 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 580, 635, 755, 775, 1029, 1198 |
| BsmFI | GGGAC | 2 cut(s) | 826, 1757 |
| BsmI | GAATGC | 2 cut(s) | 1095, 1711 |
| BsnI | GGCC | 4 cut(s) | 1107, 1314, 1403, 1683 |
| BsoBI | CYCGRG | 2 cut(s) | 473, 1341 |
| Bsp1286I | GDGCHC | 3 cut(s) | 472, 1417, 1794 |
| Bsp1407I | TGTACA | 1 cut(s) | 1163 |
| Bsp143I | GATC | 8 cut(s) | 121, 499, 949, 1252, 1441, 1614, 1688, 1692 |
| BspACI | CCGC | 7 cut(s) | 809, 839, 851, 928, 1210, 1627, 1672 |
| BspANI | GGCC | 4 cut(s) | 1107, 1314, 1403, 1683 |
| BspCNI | CTCAG | 5 cut(s) | 730, 904, 952, 1390, 1410 |
| BspDI | ATCGAT | 2 cut(s) | 1687, 1691 |
| BspFNI | CGCG | 2 cut(s) | 853, 1095 |
| BspLI | GGNNCC | 7 cut(s) | 640, 669, 767, 1034, 1567, 1772, 1773 |
| BspMAI | CTGCAG | 1 cut(s) | 1751 |
| BspQI | GCTCTTC | 1 cut(s) | 1405 |
| BspT107I | GGYRCC | 1 cut(s) | 638 |
| BspTI | CTTAAG | 1 cut(s) | 1558 |
| BsrDI | GCAATG | 2 cut(s) | 901, 1543 |
| BsrGI | TGTACA | 1 cut(s) | 1163 |
| BsrI | ACTGG | 5 cut(s) | 1036, 1315, 1439, 1553, 1634 |
| BssECI | CCNNGG | 3 cut(s) | 748, 956, 1766 |
| BssMI | GATC | 8 cut(s) | 121, 499, 949, 1252, 1441, 1614, 1688, 1692 |
| BssT1I | CCWWGG | 1 cut(s) | 956 |
| Bst2UI | CCWGG | 3 cut(s) | 750, 1193, 1767 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 1163 |
| Bst6I | CTCTTC | 8 cut(s) | 336, 440, 446, 615, 1120, 1277, 1405, 1495 |
| BstAFI | CTTAAG | 1 cut(s) | 1558 |
| BstAUI | TGTACA | 1 cut(s) | 1163 |
| BstC8I | GCNNGC | 3 cut(s) | 468, 1073, 1717 |
| BstDEI | CTNAG | 6 cut(s) | 738, 912, 939, 1119, 1398, 1418 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1196 |
| BstF5I | GGATG | 4 cut(s) | 39, 374, 950, 1612 |
| BstFNI | CGCG | 2 cut(s) | 853, 1095 |
| BstHHI | GCGC | 2 cut(s) | 1095, 1222 |
| BstKTI | GATC | 8 cut(s) | 124, 502, 952, 1255, 1444, 1617, 1691, 1695 |
| BstMBI | GATC | 8 cut(s) | 121, 499, 949, 1252, 1441, 1614, 1688, 1692 |
| BstMCI | CGRYCG | 1 cut(s) | 1691 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 356, 838, 934, 1092, 1400, 1680, 1758 |
| BstNI | CCWGG | 3 cut(s) | 750, 1193, 1767 |
| BstSCI | CCNGG | 3 cut(s) | 748, 1191, 1765 |
| BstSFI | CTRYAG | 4 cut(s) | 52, 588, 1405, 1747 |
| BstUI | CGCG | 2 cut(s) | 853, 1095 |
| BstV1I | GCAGC | 2 cut(s) | 1629, 1761 |
| BstV2I | GAAGAC | 2 cut(s) | 448, 1465 |
| BstX2I | RGATCY | 1 cut(s) | 499 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 896 |
| BstYI | RGATCY | 1 cut(s) | 499 |
| Bsu15I | ATCGAT | 2 cut(s) | 1687, 1691 |
| Bsu36I | CCTNAGG | 1 cut(s) | 939 |
| BsuRI | GGCC | 4 cut(s) | 1107, 1314, 1403, 1683 |
| BsuTUI | ATCGAT | 2 cut(s) | 1687, 1691 |
| BtsCI | GGATG | 4 cut(s) | 39, 374, 950, 1612 |
| BtsI | GCAGTG | 4 cut(s) | 213, 279, 366, 411 |
| BtsIMutI | CAGTG | 7 cut(s) | 67, 213, 279, 366, 411, 1308, 1641 |
| Cac8I | GCNNGC | 3 cut(s) | 468, 1073, 1717 |
| CaiI | CAGNNNCTG | 1 cut(s) | 707 |
| CfoI | GCGC | 2 cut(s) | 1095, 1222 |
| Cfr13I | GGNCC | 1 cut(s) | 1771 |
| ClaI | ATCGAT | 2 cut(s) | 1687, 1691 |
| Csp6I | GTAC | 1 cut(s) | 1164 |
| CviAII | CATG | 5 cut(s) | 1024, 1328, 1425, 1533, 1782 |
| CviQI | GTAC | 1 cut(s) | 1164 |
| DdeI | CTNAG | 6 cut(s) | 738, 912, 939, 1119, 1398, 1418 |
| DpnI | GATC | 8 cut(s) | 123, 501, 951, 1254, 1443, 1616, 1690, 1694 |
| DpnII | GATC | 8 cut(s) | 121, 499, 949, 1252, 1441, 1614, 1688, 1692 |
| EaeI | YGGCCR | 3 cut(s) | 1105, 1312, 1681 |
| Eam1104I | CTCTTC | 8 cut(s) | 336, 440, 446, 615, 1120, 1277, 1405, 1495 |
| EarI | CTCTTC | 8 cut(s) | 336, 440, 446, 615, 1120, 1277, 1405, 1495 |
| Ecl136II | GAGCTC | 3 cut(s) | 470, 1415, 1792 |
| Eco130I | CCWWGG | 1 cut(s) | 956 |
| Eco147I | AGGCCT | 1 cut(s) | 1403 |
| Eco24I | GRGCYC | 3 cut(s) | 472, 1417, 1794 |
| Eco47I | GGWCC | 1 cut(s) | 1771 |
| Eco53kI | GAGCTC | 3 cut(s) | 470, 1415, 1792 |
| Eco81I | CCTNAGG | 1 cut(s) | 939 |
| Eco88I | CYCGRG | 2 cut(s) | 473, 1341 |
| EcoICRI | GAGCTC | 3 cut(s) | 470, 1415, 1792 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1196 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1771 |
| EcoRII | CCWGG | 3 cut(s) | 748, 1191, 1765 |
| EcoT14I | CCWWGG | 1 cut(s) | 956 |
| EcoT22I | ATGCAT | 2 cut(s) | 1396, 1783 |
| EcoT38I | GRGCYC | 3 cut(s) | 472, 1417, 1794 |
| ErhI | CCWWGG | 1 cut(s) | 956 |
| FaeI | CATG | 5 cut(s) | 1027, 1331, 1428, 1536, 1785 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 489, 521 |
| FaqI | GGGAC | 2 cut(s) | 826, 1757 |
| FatI | CATG | 5 cut(s) | 1023, 1327, 1424, 1532, 1781 |
| FauI | CCCGC | 1 cut(s) | 802 |
| FauNDI | CATATG | 1 cut(s) | 865 |
| FbaI | TGATCA | 2 cut(s) | 1441, 1614 |
| FblI | GTMKAC | 1 cut(s) | 591 |
| Fnu4HI | GCNGC | 2 cut(s) | 1643, 1750 |
| FokI | GGATG | 4 cut(s) | 26, 361, 957, 1619 |
| FriOI | GRGCYC | 3 cut(s) | 472, 1417, 1794 |
| Fsp4HI | GCNGC | 2 cut(s) | 1643, 1750 |
| FspBI | CTAG | 1 cut(s) | 96 |
| FspI | TGCGCA | 1 cut(s) | 1221 |
| GlaI | GCGC | 2 cut(s) | 1094, 1221 |
| GluI | GCNGC | 2 cut(s) | 1643, 1750 |
| HaeIII | GGCC | 4 cut(s) | 1107, 1314, 1403, 1683 |
| HhaI | GCGC | 2 cut(s) | 1095, 1222 |
| Hin1II | CATG | 5 cut(s) | 1027, 1331, 1428, 1536, 1785 |
| Hin6I | GCGC | 2 cut(s) | 1093, 1220 |
| HinP1I | GCGC | 2 cut(s) | 1093, 1220 |
| HincII | GTYRAC | 1 cut(s) | 1662 |
| HindII | GTYRAC | 1 cut(s) | 1662 |
| HindIII | AAGCTT | 1 cut(s) | 876 |
| HphI | GGTGA | 5 cut(s) | 421, 797, 832, 994, 1207 |
| Hpy166II | GTNNAC | 6 cut(s) | 175, 213, 279, 592, 1323, 1662 |
| Hpy188I | TCNGA | 7 cut(s) | 703, 913, 1032, 1239, 1399, 1419, 1505 |
| Hpy188III | TCNNGA | 3 cut(s) | 205, 271, 473 |
| Hpy8I | GTNNAC | 6 cut(s) | 175, 213, 279, 592, 1323, 1662 |
| Hpy99I | CGWCG | 1 cut(s) | 721 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 1163 |
| HpyCH4IV | ACGT | 1 cut(s) | 1276 |
| HpyCH4V | TGCA | 7 cut(s) | 968, 1075, 1394, 1536, 1709, 1749, 1781 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 356, 838, 934, 1092, 1400, 1680, 1758 |
| HpyF3I | CTNAG | 6 cut(s) | 738, 912, 939, 1119, 1398, 1418 |
| HpySE526I | ACGT | 1 cut(s) | 1276 |
| Hsp92II | CATG | 5 cut(s) | 1027, 1331, 1428, 1536, 1785 |
| HspAI | GCGC | 2 cut(s) | 1093, 1220 |
| KflI | GGGWCCC | 1 cut(s) | 1771 |
| Ksp22I | TGATCA | 2 cut(s) | 1441, 1614 |
| Kzo9I | GATC | 8 cut(s) | 121, 499, 949, 1252, 1441, 1614, 1688, 1692 |
| LguI | GCTCTTC | 1 cut(s) | 1405 |
| LmnI | GCTCC | 3 cut(s) | 91, 667, 1565 |
| Lsp1109I | GCAGC | 2 cut(s) | 1629, 1761 |
| LweI | GCATC | 4 cut(s) | 996, 1381, 1403, 1768 |
| MaeI | CTAG | 1 cut(s) | 96 |
| MaeII | ACGT | 1 cut(s) | 1276 |
| MaeIII | GTNAC | 7 cut(s) | 56, 91, 905, 1130, 1182, 1484, 1651 |
| MalI | GATC | 8 cut(s) | 123, 501, 951, 1254, 1443, 1616, 1690, 1694 |
| MboI | GATC | 8 cut(s) | 121, 499, 949, 1252, 1441, 1614, 1688, 1692 |
| MflI | RGATCY | 1 cut(s) | 499 |
| MhlI | GDGCHC | 3 cut(s) | 472, 1417, 1794 |
| MlsI | TGGCCA | 2 cut(s) | 1314, 1683 |
| MluNI | TGGCCA | 2 cut(s) | 1314, 1683 |
| MlyI | GAGTC | 6 cut(s) | 731, 902, 1052, 1215, 1234, 1318 |
| MmeI | TCCRAC | 2 cut(s) | 1259, 1262 |
| Mox20I | TGGCCA | 2 cut(s) | 1314, 1683 |
| Mph1103I | ATGCAT | 2 cut(s) | 1396, 1783 |
| MroXI | GAANNNNTTC | 2 cut(s) | 770, 1037 |
| MscI | TGGCCA | 2 cut(s) | 1314, 1683 |
| MseI | TTAA | 8 cut(s) | 146, 183, 249, 963, 1215, 1305, 1452, 1559 |
| Msp20I | TGGCCA | 2 cut(s) | 1314, 1683 |
| MspCI | CTTAAG | 1 cut(s) | 1558 |
| MspR9I | CCNGG | 3 cut(s) | 750, 1193, 1767 |
| Mva1269I | GAATGC | 2 cut(s) | 1095, 1711 |
| MvaI | CCWGG | 3 cut(s) | 750, 1193, 1767 |
| MvnI | CGCG | 2 cut(s) | 853, 1095 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 356, 838, 934, 1092, 1400, 1680, 1758 |
| NdeI | CATATG | 1 cut(s) | 865 |
| NdeII | GATC | 8 cut(s) | 121, 499, 949, 1252, 1441, 1614, 1688, 1692 |
| NlaIII | CATG | 5 cut(s) | 1027, 1331, 1428, 1536, 1785 |
| NlaIV | GGNNCC | 7 cut(s) | 640, 669, 767, 1034, 1567, 1772, 1773 |
| NmeAIII | GCCGAG | 1 cut(s) | 288 |
| NmuCI | GTSAC | 3 cut(s) | 905, 1182, 1651 |
| NsbI | TGCGCA | 1 cut(s) | 1221 |
| NsiI | ATGCAT | 2 cut(s) | 1396, 1783 |
| PaeR7I | CTCGAG | 2 cut(s) | 473, 1341 |
| PceI | AGGCCT | 1 cut(s) | 1403 |
| PciSI | GCTCTTC | 1 cut(s) | 1405 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 450 |
| PctI | GAATGC | 2 cut(s) | 1095, 1711 |
| PdmI | GAANNNNTTC | 2 cut(s) | 770, 1037 |
| PfeI | GAWTC | 7 cut(s) | 397, 644, 1019, 1027, 1099, 1520, 1630 |
| PflFI | GACNNNGTC | 1 cut(s) | 721 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 755 |
| PkrI | GCNGC | 2 cut(s) | 1644, 1751 |
| Ple19I | CGATCG | 1 cut(s) | 1691 |
| PleI | GAGTC | 6 cut(s) | 730, 902, 1051, 1214, 1234, 1318 |
| PpsI | GAGTC | 6 cut(s) | 730, 902, 1051, 1214, 1234, 1318 |
| PpuMI | RGGWCCY | 1 cut(s) | 1771 |
| PshBI | ATTAAT | 2 cut(s) | 1215, 1452 |
| Psp124BI | GAGCTC | 3 cut(s) | 472, 1417, 1794 |
| Psp1406I | AACGTT | 1 cut(s) | 1276 |
| Psp5II | RGGWCCY | 1 cut(s) | 1771 |
| Psp6I | CCWGG | 3 cut(s) | 748, 1191, 1765 |
| PspGI | CCWGG | 3 cut(s) | 748, 1191, 1765 |
| PspN4I | GGNNCC | 7 cut(s) | 640, 669, 767, 1034, 1567, 1772, 1773 |
| PspPI | GGNCC | 1 cut(s) | 1771 |
| PspPPI | RGGWCCY | 1 cut(s) | 1771 |
| PspXI | VCTCGAGB | 1 cut(s) | 1341 |
| PstI | CTGCAG | 1 cut(s) | 1751 |
| PstNI | CAGNNNCTG | 1 cut(s) | 707 |
| PsuI | RGATCY | 1 cut(s) | 499 |
| PsyI | GACNNNGTC | 1 cut(s) | 721 |
| PvuI | CGATCG | 1 cut(s) | 1691 |
| RsaI | GTAC | 1 cut(s) | 1165 |
| RsaNI | GTAC | 1 cut(s) | 1164 |
| SacI | GAGCTC | 3 cut(s) | 472, 1417, 1794 |
| SapI | GCTCTTC | 1 cut(s) | 1405 |
| SaqAI | TTAA | 8 cut(s) | 146, 183, 249, 963, 1215, 1305, 1452, 1559 |
| SatI | GCNGC | 2 cut(s) | 1643, 1750 |
| Sau3AI | GATC | 8 cut(s) | 121, 499, 949, 1252, 1441, 1614, 1688, 1692 |
| Sau96I | GGNCC | 1 cut(s) | 1771 |
| SchI | GAGTC | 6 cut(s) | 731, 902, 1052, 1215, 1234, 1318 |
| ScrFI | CCNGG | 3 cut(s) | 750, 1193, 1767 |
| SduI | GDGCHC | 3 cut(s) | 472, 1417, 1794 |
| SfaNI | GCATC | 4 cut(s) | 996, 1381, 1403, 1768 |
| SfcI | CTRYAG | 4 cut(s) | 52, 588, 1405, 1747 |
| Sfr274I | CTCGAG | 2 cut(s) | 473, 1341 |
| SinI | GGWCC | 1 cut(s) | 1771 |
| SlaI | CTCGAG | 2 cut(s) | 473, 1341 |
| SmlI | CTYRAG | 3 cut(s) | 473, 1341, 1558 |
| SmoI | CTYRAG | 3 cut(s) | 473, 1341, 1558 |
| SpeI | ACTAGT | 1 cut(s) | 95 |
| SseBI | AGGCCT | 1 cut(s) | 1403 |
| SsiI | CCGC | 7 cut(s) | 809, 839, 851, 928, 1210, 1627, 1672 |
| SspI | AATATT | 2 cut(s) | 69, 1450 |
| SspMI | CTAG | 1 cut(s) | 96 |
| SstI | GAGCTC | 3 cut(s) | 472, 1417, 1794 |
| StuI | AGGCCT | 1 cut(s) | 1403 |
| StyD4I | CCNGG | 3 cut(s) | 748, 1191, 1765 |
| StyI | CCWWGG | 1 cut(s) | 956 |
| TaaI | ACNGT | 2 cut(s) | 62, 1163 |
| TaiI | ACGT | 1 cut(s) | 1279 |
| TaqI | TCGA | 8 cut(s) | 338, 474, 870, 1041, 1149, 1342, 1687, 1691 |
| TatI | WGTACW | 1 cut(s) | 1163 |
| TfiI | GAWTC | 7 cut(s) | 397, 644, 1019, 1027, 1099, 1520, 1630 |
| Tru1I | TTAA | 8 cut(s) | 146, 183, 249, 963, 1215, 1305, 1452, 1559 |
| Tru9I | TTAA | 8 cut(s) | 146, 183, 249, 963, 1215, 1305, 1452, 1559 |
| TscAI | CASTG | 7 cut(s) | 67, 220, 286, 366, 418, 1315, 1641 |
| TseFI | GTSAC | 3 cut(s) | 905, 1182, 1651 |
| TseI | GCWGC | 2 cut(s) | 1642, 1749 |
| Tsp45I | GTSAC | 3 cut(s) | 905, 1182, 1651 |
| TspDTI | ATGAA | 6 cut(s) | 415, 888, 1040, 1610, 1623, 1833 |
| TspGWI | ACGGA | 3 cut(s) | 734, 747, 1052 |
| TspRI | CASTG | 7 cut(s) | 67, 220, 286, 366, 418, 1315, 1641 |
| Tth111I | GACNNNGTC | 1 cut(s) | 721 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 755 |
| Vha464I | CTTAAG | 1 cut(s) | 1558 |
| VpaK11BI | GGWCC | 1 cut(s) | 1771 |
| VspI | ATTAAT | 2 cut(s) | 1215, 1452 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1196 |
| XapI | RAATTY | 3 cut(s) | 1145, 1172, 1839 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1505 |
| XhoI | CTCGAG | 2 cut(s) | 473, 1341 |
| XmiI | GTMKAC | 1 cut(s) | 591 |
| XmnI | GAANNNNTTC | 2 cut(s) | 770, 1037 |
| XspI | CTAG | 1 cut(s) | 96 |
| Zsp2I | ATGCAT | 2 cut(s) | 1396, 1783 |