Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008805

Physical Location & Seq

Genomic Coordinates Reverse (-)

15040052 .. 15044278

Gene Structure 4227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37068

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCAGTGGCAACACCCAGTAATTCCTCCCCCCAAAAGAGCCGTTACGCCTTCATCGCTATCATTTTCACCACCATCTTCCTCTTCACCATTTTCGTCTTCACCAAACGAGCTCTTGAGCAATCTCTCTTTCTCTACAAGGACCACTTTACCCAAATCCCCTTTTCTTCTCCTCCTTCTTCAACTAACAATTCCCACAGCTCTGACCTGAAGGACTCCAATGACCAAAATGGTGGTGAAAATGAGAACCCAGATGGTGAAATGGGTGAAATTCCGTGTGATTTGTACGTGGGAAGTTGGGTGAGAGATGAGCAATACCCGCTTTACAAACCGGGTTCATGCCCTTATGTTGATGAAGCTTTTGATTGCCAGAGCAATGGGAGGAGCGACTCTGAGTATCTCAAATGGCGGTGGAAACCTGACGGCTGTGATCTTCCAAGGTTTAATGCAACAGACTTTTTGGTGAGGCTACGGGGTAAAAGGTTGATGCTCATAGGAGATTCCATGAACCGGAACCAGTTTGAGTCAATATTATGCCTCCTCCGAGAAGGCTTGCATAATAAGAGCAGAATGTATGAGGTCCATGGCCACAAAATATCCAAAGAAAGAAGCTATTTTGTTTTCAAATTCCAGGACTATGACTGTACGGTGGAGTTTGTGTTGTCACATTTCCTTGTGAAAGAAGGAGTCCGCTTTGATGAGCAAGGGAAGTCAAATCCAACTTTATCAATGGATCAAATTGACAAGAATGCTAAACGTTGGAAGAAGGCTGACATTCTTGTCTTTAATACTGGCCACTGGTGGGCTCATGGAAAGACTGCTCGTGGGAAAAACTACTACAAAGAAGGAGATTATCTCTATCCACAATTTGATGTATCTGAGGCCTTTAGACGGGCCTTGAAGACCTGGGCTAGCTGGGTTGAGCTTAATGTGAATCCAAAAAAGCAGTTGATCTTCTATCGTGGGTACTCTTCTTCACATTTCAGAGGTGGAGATTGGGATTCAGGTGGGTCATGCAATGGGGAAAAAGAACCAGCCTTCTCGGGGGCCATATTGGATAGCTACCCTTTAAAAATGAAGATAGTGGATGAAGTAATCAAAGAAATGAAGGTTCCAGTGAAACTATTGAATGTGACAAGGTTAACCAATTTCCGCAAGGATGGCCATCCATCAATCCACGGACAGAAAGTTTCCACCAGGAGGGAAGACTGTAGCCATTGGTGTGTTCCTGGAGTCCCTGATGCATGGAATGAGCTCATCTATGCCACTATGGCTTTTCAGCAGACCAAATCAAACAGTACAGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

436

Amino Acids

50.19

Weight (kDa)

8.4

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	93 - 144	8.6e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	145 - 422	9.3e-97	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20590 AT5G20590
fragaria_vesca	FvH4_4g06600
malus_domestica	MD16G1241800.v1.1
prunus_persica	Prupe.1G068600_v2.0.a1 Prupe.1G068600_v2.0.a1
pyrus_communis	pycom16g20260
rosa_chinensis	RchiOBHm_Chr4g0398501 RchiOBHm_Chr4g0398521
rosa_laevigata	RLG00000009351 RLG00000009358
rosa_multiflora	Rmu_sc0007985.1_g000006 Rmu_ssc0000240.1_g000023
rosa_roxburghii	Rroxscaffold_5G00343470 Rroxscaffold_5G00343480
rosa_rugosa	Rorug04G0008800
rosa_samantha	Rh4AG086900 Rh4BG083500 Rh4CG094900 Rh4CG095000 Rh4DG078300
rosa_wichuraiana	Rw4G007240 Rw4G007250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	779
AciI	CCGC	4 cut(s)	320, 409, 691, 1153
AclI	AACGTT	1 cut(s)	757
AclWI	GGATC	1 cut(s)	741
AcoI	YGGCCR	3 cut(s)	586, 793, 1162
AcsI	RAATTY	2 cut(s)	270, 626
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	4 cut(s)	287, 646, 968, 1300
AfiI	CCNNNNNNNGG	5 cut(s)	510, 802, 891, 1044, 1200
AgsI	TTSAA	4 cut(s)	183, 625, 901, 1129
AjnI	CCWGG	4 cut(s)	630, 905, 1196, 1228
AluBI	AGCT	8 cut(s)	113, 201, 359, 612, 915, 925, 1062, 1255
AluI	AGCT	8 cut(s)	113, 201, 359, 612, 915, 925, 1062, 1255
Alw21I	GWGCWC	2 cut(s)	115, 1257
AlwI	GGATC	1 cut(s)	741
Ama87I	CYCGRG	1 cut(s)	1042
AoxI	GGCC	6 cut(s)	586, 793, 882, 894, 1047, 1162
ApoI	RAATTY	2 cut(s)	270, 626
AspS9I	GGNCC	4 cut(s)	142, 580, 894, 1047
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	8 cut(s)	61, 79, 94, 248, 269, 278, 313, 475
AsuNHI	GCTAGC	1 cut(s)	911
AvaI	CYCGRG	1 cut(s)	1042
AvaII	GGWCC	2 cut(s)	142, 580
BalI	TGGCCA	3 cut(s)	588, 795, 1164
BanII	GRGCYC	3 cut(s)	115, 808, 1257
BauI	CACGAG	1 cut(s)	822
BbsI	GAAGAC	3 cut(s)	91, 908, 1212
Bbv12I	GWGCWC	2 cut(s)	115, 1257
BccI	CCATC	5 cut(s)	83, 248, 1154, 1173, 1177
BceAI	ACGGC	2 cut(s)	27, 439
BciT130I	CCWGG	4 cut(s)	632, 907, 1198, 1230
BcnI	CCSGG	1 cut(s)	333
BfaI	CTAG	1 cut(s)	912
BfmI	CTRYAG	1 cut(s)	1210
BglI	GCCNNNNNGGC	1 cut(s)	1271
Bme1390I	CCNGG	5 cut(s)	333, 632, 907, 1198, 1230
Bme18I	GGWCC	2 cut(s)	142, 580
BmeT110I	CYCGRG	1 cut(s)	1042
BmgT120I	GGNCC	4 cut(s)	142, 580, 894, 1047
BmiI	GGNNCC	3 cut(s)	515, 1048, 1113
BmrFI	CCNGG	5 cut(s)	333, 632, 907, 1198, 1230
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	2 cut(s)	477, 1231
BmtI	GCTAGC	1 cut(s)	915
BmuI	ACTGGG	1 cut(s)	12
BpiI	GAAGAC	3 cut(s)	91, 908, 1212
BplI	GAGNNNNNCTC	2 cut(s)	840, 872
BpmI	CTGGAG	1 cut(s)	1251
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	333
BsaAI	YACGTR	1 cut(s)	289
BsaBI	GATNNNNATC	1 cut(s)	1164
BsaJI	CCNNGG	4 cut(s)	437, 583, 906, 1177
BsaWI	WCCGGW	1 cut(s)	510
BsaXI	ACNNNNNCTCC	2 cut(s)	644, 674
Bsc4I	CCNNNNNNNGG	5 cut(s)	510, 802, 891, 1044, 1200
Bse1I	ACTGG	5 cut(s)	18, 517, 796, 803, 1115
Bse3DI	GCAATG	2 cut(s)	382, 1024
Bse8I	GATNNNNATC	1 cut(s)	1164
BseBI	CCWGG	4 cut(s)	632, 907, 1198, 1230
BseDI	CCNNGG	4 cut(s)	437, 583, 906, 1177
BseGI	GGATG	3 cut(s)	1093, 1165, 1165
BseJI	GATNNNNATC	1 cut(s)	1164
BseLI	CCNNNNNNNGG	5 cut(s)	510, 802, 891, 1044, 1200
BseMI	GCAATG	2 cut(s)	382, 1024
BseMII	CTCAG	2 cut(s)	384, 870
BseNI	ACTGG	5 cut(s)	18, 517, 796, 803, 1115
BseRI	GAGGAG	3 cut(s)	162, 397, 530
BseYI	CCCAGC	1 cut(s)	915
BshFI	GGCC	6 cut(s)	588, 795, 884, 896, 1049, 1164
BsiHKAI	GWGCWC	2 cut(s)	115, 1257
BsiHKCI	CYCGRG	1 cut(s)	1042
BsiSI	CCGG	2 cut(s)	332, 511
BslFI	GGGAC	1 cut(s)	1220
BslI	CCNNNNNNNGG	5 cut(s)	510, 802, 891, 1044, 1200
BsmFI	GGGAC	1 cut(s)	1220
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	6 cut(s)	588, 795, 884, 896, 1049, 1164
BsoBI	CYCGRG	1 cut(s)	1042
Bsp1286I	GDGCHC	3 cut(s)	115, 808, 1257
Bsp143I	GATC	3 cut(s)	430, 733, 951
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	4 cut(s)	320, 409, 691, 1153
BspANI	GGCC	6 cut(s)	588, 795, 884, 896, 1049, 1164
BspCNI	CTCAG	2 cut(s)	385, 871
BspLI	GGNNCC	3 cut(s)	515, 1048, 1113
BspOI	GCTAGC	1 cut(s)	915
BspPI	GGATC	1 cut(s)	741
BsrDI	GCAATG	2 cut(s)	382, 1024
BsrI	ACTGG	5 cut(s)	18, 517, 796, 803, 1115
BssECI	CCNNGG	4 cut(s)	437, 583, 906, 1177
BssMI	GATC	3 cut(s)	430, 733, 951
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	2 cut(s)	437, 583
Bst2BI	CACGAG	1 cut(s)	822
Bst2UI	CCWGG	4 cut(s)	632, 907, 1198, 1230
Bst4CI	ACNGT	5 cut(s)	644, 649, 1211, 1298, 1303
Bst6I	CTCTTC	2 cut(s)	89, 976
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	554, 913
BstDEI	CTNAG	2 cut(s)	393, 879
BstDSI	CCRYGG	2 cut(s)	583, 1177
BstF5I	GGATG	3 cut(s)	1093, 1165, 1165
BstKTI	GATC	3 cut(s)	433, 736, 954
BstMBI	GATC	3 cut(s)	430, 733, 951
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 319, 1161, 1271
BstNI	CCWGG	4 cut(s)	632, 907, 1198, 1230
BstSCI	CCNGG	5 cut(s)	331, 630, 905, 1196, 1228
BstSFI	CTRYAG	1 cut(s)	1210
BstV2I	GAAGAC	3 cut(s)	91, 908, 1212
BstXI	CCANNNNNNTGG	2 cut(s)	233, 377
BsuRI	GGCC	6 cut(s)	588, 795, 884, 896, 1049, 1164
BtgI	CCRYGG	2 cut(s)	583, 1177
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	1093, 1165, 1165
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 796, 1122
Cac8I	GCNNGC	2 cut(s)	554, 913
Cfr13I	GGNCC	4 cut(s)	142, 580, 894, 1047
Csp6I	GTAC	4 cut(s)	286, 645, 967, 1299
CviAII	CATG	6 cut(s)	339, 505, 584, 809, 1014, 1245
CviQI	GTAC	4 cut(s)	286, 645, 967, 1299
DdeI	CTNAG	2 cut(s)	393, 879
DpnI	GATC	3 cut(s)	432, 735, 953
DpnII	GATC	3 cut(s)	430, 733, 951
DraI	TTTAAA	1 cut(s)	1071
DrdI	GACNNNNNNGTC	1 cut(s)	779
DseDI	GACNNNNNNGTC	1 cut(s)	779
EaeI	YGGCCR	3 cut(s)	586, 793, 1162
Eam1104I	CTCTTC	2 cut(s)	89, 976
EarI	CTCTTC	2 cut(s)	89, 976
Ecl136II	GAGCTC	2 cut(s)	113, 1255
Eco130I	CCWWGG	2 cut(s)	437, 583
Eco147I	AGGCCT	1 cut(s)	884
Eco24I	GRGCYC	3 cut(s)	115, 808, 1257
Eco47I	GGWCC	2 cut(s)	142, 580
Eco53kI	GAGCTC	2 cut(s)	113, 1255
Eco57I	CTGAAG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	1042
EcoICRI	GAGCTC	2 cut(s)	113, 1255
EcoRII	CCWGG	4 cut(s)	630, 905, 1196, 1228
EcoT14I	CCWWGG	2 cut(s)	437, 583
EcoT22I	ATGCAT	1 cut(s)	1246
EcoT38I	GRGCYC	3 cut(s)	115, 808, 1257
ErhI	CCWWGG	2 cut(s)	437, 583
FaeI	CATG	6 cut(s)	342, 508, 587, 812, 1017, 1248
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	1 cut(s)	1220
FatI	CATG	6 cut(s)	338, 504, 583, 808, 1013, 1244
FauI	CCCGC	1 cut(s)	327
FokI	GGATG	3 cut(s)	1100, 1152, 1172
FriOI	GRGCYC	3 cut(s)	115, 808, 1257
FspBI	CTAG	1 cut(s)	912
GsaI	CCCAGC	1 cut(s)	919
GsuI	CTGGAG	1 cut(s)	1251
HaeIII	GGCC	6 cut(s)	588, 795, 884, 896, 1049, 1164
HapII	CCGG	2 cut(s)	332, 511
Hin1II	CATG	6 cut(s)	342, 508, 587, 812, 1017, 1248
HincII	GTYRAC	1 cut(s)	1143
HindII	GTYRAC	1 cut(s)	1143
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	8 cut(s)	215, 389, 500, 524, 687, 934, 1001, 1233
HpaI	GTTAAC	1 cut(s)	1143
HpaII	CCGG	2 cut(s)	332, 511
HphI	GGTGA	8 cut(s)	61, 79, 94, 248, 269, 278, 313, 475
Hpy166II	GTNNAC	1 cut(s)	1143
Hpy188I	TCNGA	5 cut(s)	205, 394, 545, 880, 986
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	1143
HpyAV	CCTTC	9 cut(s)	61, 186, 205, 542, 677, 760, 839, 1048, 1102
HpyCH4III	ACNGT	5 cut(s)	644, 649, 1211, 1298, 1303
HpyCH4IV	ACGT	2 cut(s)	288, 757
HpyCH4V	TGCA	4 cut(s)	449, 556, 1017, 1244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 319, 1161, 1271
HpyF3I	CTNAG	2 cut(s)	393, 879
HpySE526I	ACGT	2 cut(s)	288, 757
Hsp92II	CATG	6 cut(s)	342, 508, 587, 812, 1017, 1248
KspAI	GTTAAC	1 cut(s)	1143
Kzo9I	GATC	3 cut(s)	430, 733, 951
LmnI	GCTCC	1 cut(s)	384
LweI	GCATC	2 cut(s)	477, 1231
MaeI	CTAG	1 cut(s)	912
MaeII	ACGT	2 cut(s)	288, 757
MaeIII	GTNAC	3 cut(s)	44, 663, 1132
MalI	GATC	3 cut(s)	432, 735, 953
MboI	GATC	3 cut(s)	430, 733, 951
MhlI	GDGCHC	3 cut(s)	115, 808, 1257
MlsI	TGGCCA	3 cut(s)	588, 795, 1164
MluCI	AATT	7 cut(s)	22, 190, 270, 626, 738, 866, 1147
MluNI	TGGCCA	3 cut(s)	588, 795, 1164
MlyI	GAGTC	5 cut(s)	209, 383, 533, 696, 1242
MmeI	TCCRAC	2 cut(s)	740, 743
Mox20I	TGGCCA	3 cut(s)	588, 795, 1164
Mph1103I	ATGCAT	1 cut(s)	1246
MscI	TGGCCA	3 cut(s)	588, 795, 1164
MseI	TTAA	5 cut(s)	444, 786, 927, 1070, 1142
MslI	CAYNNNNRTG	1 cut(s)	1221
Msp20I	TGGCCA	3 cut(s)	588, 795, 1164
MspI	CCGG	2 cut(s)	332, 511
MspR9I	CCNGG	5 cut(s)	333, 632, 907, 1198, 1230
Mva1269I	GAATGC	1 cut(s)	754
MvaI	CCWGG	4 cut(s)	632, 907, 1198, 1230
MwoI	GCNNNNNNNGC	4 cut(s)	56, 319, 1161, 1271
NciI	CCSGG	1 cut(s)	333
NcoI	CCATGG	1 cut(s)	583
NdeII	GATC	3 cut(s)	430, 733, 951
NheI	GCTAGC	1 cut(s)	911
NlaIII	CATG	6 cut(s)	342, 508, 587, 812, 1017, 1248
NlaIV	GGNNCC	3 cut(s)	515, 1048, 1113
NmuCI	GTSAC	2 cut(s)	663, 1132
NsiI	ATGCAT	1 cut(s)	1246
PceI	AGGCCT	1 cut(s)	884
PctI	GAATGC	1 cut(s)	754
PfeI	GAWTC	3 cut(s)	500, 934, 1001
PfoI	TCCNGGA	2 cut(s)	630, 1228
PleI	GAGTC	5 cut(s)	209, 383, 532, 695, 1241
PpsI	GAGTC	5 cut(s)	209, 383, 532, 695, 1241
Ppu21I	YACGTR	1 cut(s)	289
Psp124BI	GAGCTC	2 cut(s)	115, 1257
Psp1406I	AACGTT	1 cut(s)	757
Psp6I	CCWGG	4 cut(s)	630, 905, 1196, 1228
PspFI	CCCAGC	1 cut(s)	915
PspGI	CCWGG	4 cut(s)	630, 905, 1196, 1228
PspN4I	GGNNCC	3 cut(s)	515, 1048, 1113
PspPI	GGNCC	4 cut(s)	142, 580, 894, 1047
RsaI	GTAC	4 cut(s)	287, 646, 968, 1300
RsaNI	GTAC	4 cut(s)	286, 645, 967, 1299
RseI	CAYNNNNRTG	1 cut(s)	1221
SacI	GAGCTC	2 cut(s)	115, 1257
SaqAI	TTAA	5 cut(s)	444, 786, 927, 1070, 1142
Sau3AI	GATC	3 cut(s)	430, 733, 951
Sau96I	GGNCC	4 cut(s)	142, 580, 894, 1047
SchI	GAGTC	5 cut(s)	209, 383, 533, 696, 1242
ScrFI	CCNGG	5 cut(s)	333, 632, 907, 1198, 1230
SduI	GDGCHC	3 cut(s)	115, 808, 1257
SfaNI	GCATC	2 cut(s)	477, 1231
SfcI	CTRYAG	1 cut(s)	1210
SinI	GGWCC	2 cut(s)	142, 580
SmiMI	CAYNNNNRTG	1 cut(s)	1221
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	7 cut(s)	22, 190, 270, 626, 738, 866, 1147
SseBI	AGGCCT	1 cut(s)	884
SsiI	CCGC	4 cut(s)	320, 409, 691, 1153
SspI	AATATT	1 cut(s)	531
SspMI	CTAG	1 cut(s)	912
SstI	GAGCTC	2 cut(s)	115, 1257
StuI	AGGCCT	1 cut(s)	884
StyD4I	CCNGG	5 cut(s)	331, 630, 905, 1196, 1228
StyI	CCWWGG	2 cut(s)	437, 583
TaaI	ACNGT	5 cut(s)	644, 649, 1211, 1298, 1303
TaiI	ACGT	2 cut(s)	291, 760
TasI	AATT	7 cut(s)	22, 190, 270, 626, 738, 866, 1147
TatI	WGTACW	1 cut(s)	1298
TfiI	GAWTC	3 cut(s)	500, 934, 1001
Tru1I	TTAA	5 cut(s)	444, 786, 927, 1070, 1142
Tru9I	TTAA	5 cut(s)	444, 786, 927, 1070, 1142
TscAI	CASTG	3 cut(s)	12, 803, 1122
TseFI	GTSAC	2 cut(s)	663, 1132
Tsp45I	GTSAC	2 cut(s)	663, 1132
TspDTI	ATGAA	8 cut(s)	43, 327, 369, 521, 1091, 1104, 1121, 1296
TspGWI	ACGGA	2 cut(s)	264, 1194
TspRI	CASTG	3 cut(s)	12, 803, 1122
VpaK11BI	GGWCC	2 cut(s)	142, 580
XapI	RAATTY	2 cut(s)	270, 626
XspI	CTAG	1 cut(s)	912
Zsp2I	ATGCAT	1 cut(s)	1246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.