RLG00000009351

Protein trichome birefringence-like 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008805
Physical Location & Seq
Forward (+)
51394468 .. 51399217
4750 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009351

Sequence Viewer

Length: 1155 bp
ATGGCAGTGGCAACACCCAATCGTGAAAATGAAAATGTGGAAGACCCAGACCTGAAGGAGTCCAATGACCAAAATGGTGGTGAAAATGAGAACCCAGACGGTAAAATGGGTGAAATTCCGTGTGATTTGTACGTGGGAAGTTGGGTGAGAGATGAGCAATACCCGCTTTACAAACCGGGTTCATGCCCTTATGTTGATGAAGCTTTTGATTGCCAGAGCAATGGGAGGAGAGACTCTGAGTATCTCAAATGGCGGTGGAAACCTGACGGCTGTGATCTTCCAAGGTTTAATGCAACAGATTTTTTGGTGAGGCTACGGGGTAAAAGGTTGATGCTCGTAGGAGATTCCATGAATCGGAACCAGTTTGAGTCAATATTATGCCTCCTCCAAGAAGGCTTACATAATAAGAGCAGAATGTATGAGGTCCATGGCCACAAGATATCCAAGGGAAGAGGCTATTTTGTTTTCAAATTCCAGGACTATGACTGTACGGTGGAATTTGTGAGGTCGCATTTCCTTGTGAAAGAAGGAGTCCGCTTTAATGCTCAAGGGAATTCAAATCCAACTCTATCAATGGATCAAATTGACAAGACAGCTAAACGTTGGAAGAAGGCTGACATTCTTGTCTTTAATACTGGCCACTGGTGGACTCATGGAAAGACTGCTCGTGGGAAAAACTACTACAAAGAAGGAGATTATCTCTATCCAAAATTTGATGCATCTGAGGCCTATAAACGGGCCCTGAAGACCTGGGCTAGCTGGGTTGAGCTTAATGTGAATCCAAAAAAGCAGTTGATCTTCTATCGTGGGTACTCTTCTTCACATTTCAGAGGTGGAGATTGGGATTCAGGTGGGTCATGCAATGGTGAAAAAGAACCAGCCTTCTCTGGGGCCATACTGGATAGTTACCCTTTGAAAATGAAGATAGTGGATGAAGTAATCAAAGAAATGAAGGTTCCAGTGAAACTATTGAATGTGACAAGGTTGACCAATTTCCGCAAGGATGGCCATCCATCAATCTACGGTAAGAAAGGTTCCACCAGGAAGCAAGACTGCAGCCATTGGTGTGTTCCTGGAGTCCCTGATGTATGGAATGAGCTAATCTATGCCACCCTGGTTTTTCAGCAGACCAAATCAAAGAGTACAGTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

385

Amino Acids

44.21

Weight (kDa)

8.75

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 41 - 92 9.2e-23 PMR5 N terminal Domain
PC-Esterase PF13839 93 - 370 1.3e-98 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 623
AciI CCGC 4 cut(s) 164, 253, 535, 997
AclI AACGTT 1 cut(s) 601
AclWI GGATC 1 cut(s) 585
AcoI YGGCCR 3 cut(s) 430, 637, 1006
AcsI RAATTY 5 cut(s) 114, 470, 497, 553, 710
AcuI CTGAAG 2 cut(s) 74, 764
AfaI GTAC 4 cut(s) 131, 490, 812, 1144
AfiI CCNNNNNNNGG 3 cut(s) 354, 735, 888
AgsI TTSAA 4 cut(s) 469, 558, 916, 973
AjnI CCWGG 5 cut(s) 474, 749, 1040, 1072, 1113
AluBI AGCT 5 cut(s) 203, 596, 759, 769, 1099
AluI AGCT 5 cut(s) 203, 596, 759, 769, 1099
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 1 cut(s) 585
AoxI GGCC 6 cut(s) 430, 637, 726, 738, 891, 1006
ApaI GGGCCC 1 cut(s) 742
ApeKI GCWGC 1 cut(s) 1056
ApoI RAATTY 5 cut(s) 114, 470, 497, 553, 710
AspS9I GGNCC 4 cut(s) 424, 738, 739, 891
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 5 cut(s) 92, 122, 157, 319, 878
AsuNHI GCTAGC 1 cut(s) 755
AvaII GGWCC 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 742
BalI TGGCCA 3 cut(s) 432, 639, 1008
BanII GRGCYC 1 cut(s) 742
BauI CACGAG 1 cut(s) 666
BbsI GAAGAC 2 cut(s) 48, 752
BbvI GCAGC 1 cut(s) 1068
BccI CCATC 3 cut(s) 998, 1017, 1021
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 5 cut(s) 476, 751, 1042, 1074, 1115
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 756
BfmI CTRYAG 1 cut(s) 1054
BisI GCNGC 1 cut(s) 1057
BlsI GCNGC 1 cut(s) 1058
Bme1390I CCNGG 6 cut(s) 177, 476, 751, 1042, 1074, 1115
Bme18I GGWCC 1 cut(s) 424
BmgT120I GGNCC 4 cut(s) 424, 738, 739, 891
BmiI GGNNCC 5 cut(s) 359, 740, 892, 957, 1036
BmrFI CCNGG 6 cut(s) 177, 476, 751, 1042, 1074, 1115
BmsI GCATC 3 cut(s) 321, 706, 728
BmtI GCTAGC 1 cut(s) 759
BpiI GAAGAC 2 cut(s) 48, 752
BplI GAGNNNNNCTC 2 cut(s) 684, 716
BpmI CTGGAG 1 cut(s) 1095
BpuEI CTTGAG 1 cut(s) 531
BpuMI CCSGG 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 133
BsaBI GATNNNNATC 1 cut(s) 1008
BsaJI CCNNGG 5 cut(s) 281, 427, 444, 750, 1113
Bsc4I CCNNNNNNNGG 3 cut(s) 354, 735, 888
Bse1I ACTGG 5 cut(s) 361, 640, 647, 903, 959
Bse3DI GCAATG 2 cut(s) 226, 868
Bse8I GATNNNNATC 1 cut(s) 1008
BseBI CCWGG 5 cut(s) 476, 751, 1042, 1074, 1115
BseDI CCNNGG 5 cut(s) 281, 427, 444, 750, 1113
BseGI GGATG 3 cut(s) 937, 1009, 1009
BseJI GATNNNNATC 1 cut(s) 1008
BseLI CCNNNNNNNGG 3 cut(s) 354, 735, 888
BseMI GCAATG 2 cut(s) 226, 868
BseMII CTCAG 2 cut(s) 228, 714
BseNI ACTGG 5 cut(s) 361, 640, 647, 903, 959
BseRI GAGGAG 2 cut(s) 241, 374
BseSI GKGCMC 1 cut(s) 742
BseXI GCAGC 1 cut(s) 1068
BseYI CCCAGC 1 cut(s) 759
BshFI GGCC 6 cut(s) 432, 639, 728, 740, 893, 1008
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 1064
BslI CCNNNNNNNGG 3 cut(s) 354, 735, 888
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 1064
BsnI GGCC 6 cut(s) 432, 639, 728, 740, 893, 1008
Bsp120I GGGCCC 1 cut(s) 738
Bsp1286I GDGCHC 1 cut(s) 742
Bsp143I GATC 3 cut(s) 274, 577, 795
Bsp19I CCATGG 1 cut(s) 427
BspACI CCGC 4 cut(s) 164, 253, 535, 997
BspANI GGCC 6 cut(s) 432, 639, 728, 740, 893, 1008
BspCNI CTCAG 2 cut(s) 229, 715
BspLI GGNNCC 5 cut(s) 359, 740, 892, 957, 1036
BspMAI CTGCAG 1 cut(s) 1058
BspOI GCTAGC 1 cut(s) 759
BspPI GGATC 1 cut(s) 585
BsrDI GCAATG 2 cut(s) 226, 868
BsrI ACTGG 5 cut(s) 361, 640, 647, 903, 959
BssECI CCNNGG 5 cut(s) 281, 427, 444, 750, 1113
BssMI GATC 3 cut(s) 274, 577, 795
BssSI CACGAG 1 cut(s) 666
BssT1I CCWWGG 3 cut(s) 281, 427, 444
Bst2BI CACGAG 1 cut(s) 666
Bst2UI CCWGG 5 cut(s) 476, 751, 1042, 1074, 1115
Bst4CI ACNGT 5 cut(s) 101, 488, 493, 1025, 1147
Bst6I CTCTTC 2 cut(s) 445, 820
BstBAI YACGTR 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 757
BstDEI CTNAG 2 cut(s) 237, 723
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 3 cut(s) 937, 1009, 1009
BstKTI GATC 3 cut(s) 277, 580, 798
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 3 cut(s) 274, 577, 795
BstMWI GCNNNNNNNGC 3 cut(s) 163, 725, 1005
BstNI CCWGG 5 cut(s) 476, 751, 1042, 1074, 1115
BstSCI CCNGG 6 cut(s) 175, 474, 749, 1040, 1072, 1113
BstSFI CTRYAG 1 cut(s) 1054
BstSLI GKGCMC 1 cut(s) 742
BstV1I GCAGC 1 cut(s) 1068
BstV2I GAAGAC 2 cut(s) 48, 752
BstXI CCANNNNNNTGG 2 cut(s) 77, 221
BsuRI GGCC 6 cut(s) 432, 639, 728, 740, 893, 1008
BtgI CCRYGG 1 cut(s) 427
BtsCI GGATG 3 cut(s) 937, 1009, 1009
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 640, 966
Cac8I GCNNGC 1 cut(s) 757
Cfr13I GGNCC 4 cut(s) 424, 738, 739, 891
Csp6I GTAC 4 cut(s) 130, 489, 811, 1143
CviAII CATG 5 cut(s) 183, 349, 428, 653, 858
CviQI GTAC 4 cut(s) 130, 489, 811, 1143
DdeI CTNAG 2 cut(s) 237, 723
DpnI GATC 3 cut(s) 276, 579, 797
DpnII GATC 3 cut(s) 274, 577, 795
DrdI GACNNNNNNGTC 1 cut(s) 623
DseDI GACNNNNNNGTC 1 cut(s) 623
EaeI YGGCCR 3 cut(s) 430, 637, 1006
Eam1104I CTCTTC 2 cut(s) 445, 820
EarI CTCTTC 2 cut(s) 445, 820
Eco130I CCWWGG 3 cut(s) 281, 427, 444
Eco147I AGGCCT 1 cut(s) 728
Eco24I GRGCYC 1 cut(s) 742
Eco32I GATATC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 2 cut(s) 74, 764
EcoO109I RGGNCCY 1 cut(s) 739
EcoRI GAATTC 1 cut(s) 553
EcoRII CCWGG 5 cut(s) 474, 749, 1040, 1072, 1113
EcoRV GATATC 1 cut(s) 441
EcoT14I CCWWGG 3 cut(s) 281, 427, 444
EcoT22I ATGCAT 1 cut(s) 721
EcoT38I GRGCYC 1 cut(s) 742
ErhI CCWWGG 3 cut(s) 281, 427, 444
FaeI CATG 5 cut(s) 186, 352, 431, 656, 861
FaqI GGGAC 1 cut(s) 1064
FatI CATG 5 cut(s) 182, 348, 427, 652, 857
FauI CCCGC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 1057
FokI GGATG 3 cut(s) 944, 996, 1016
FriOI GRGCYC 1 cut(s) 742
Fsp4HI GCNGC 1 cut(s) 1057
FspBI CTAG 1 cut(s) 756
GluI GCNGC 1 cut(s) 1057
GsaI CCCAGC 1 cut(s) 763
GsuI CTGGAG 1 cut(s) 1095
HaeIII GGCC 6 cut(s) 432, 639, 728, 740, 893, 1008
HapII CCGG 1 cut(s) 176
Hin1II CATG 5 cut(s) 186, 352, 431, 656, 861
HincII GTYRAC 1 cut(s) 987
HindII GTYRAC 1 cut(s) 987
HindIII AAGCTT 1 cut(s) 201
HpaII CCGG 1 cut(s) 176
HphI GGTGA 5 cut(s) 92, 122, 157, 319, 878
Hpy166II GTNNAC 2 cut(s) 648, 987
Hpy188I TCNGA 4 cut(s) 238, 357, 724, 830
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 2 cut(s) 648, 987
HpyAV CCTTC 7 cut(s) 49, 386, 521, 604, 683, 892, 946
HpyCH4III ACNGT 5 cut(s) 101, 488, 493, 1025, 1147
HpyCH4IV ACGT 2 cut(s) 132, 601
HpyCH4V TGCA 4 cut(s) 293, 719, 861, 1056
HpyF10VI GCNNNNNNNGC 3 cut(s) 163, 725, 1005
HpyF3I CTNAG 2 cut(s) 237, 723
HpySE526I ACGT 2 cut(s) 132, 601
Hsp92II CATG 5 cut(s) 186, 352, 431, 656, 861
Kzo9I GATC 3 cut(s) 274, 577, 795
Lsp1109I GCAGC 1 cut(s) 1068
LweI GCATC 3 cut(s) 321, 706, 728
MaeI CTAG 1 cut(s) 756
MaeII ACGT 2 cut(s) 132, 601
MaeIII GTNAC 2 cut(s) 905, 976
MalI GATC 3 cut(s) 276, 579, 797
MboI GATC 3 cut(s) 274, 577, 795
MboII GAAGA 9 cut(s) 53, 269, 462, 619, 757, 790, 807, 810, 934
MhlI GDGCHC 1 cut(s) 742
MlsI TGGCCA 3 cut(s) 432, 639, 1008
MluCI AATT 7 cut(s) 114, 470, 497, 553, 582, 710, 991
MluNI TGGCCA 3 cut(s) 432, 639, 1008
MlyI GAGTC 6 cut(s) 68, 227, 377, 540, 643, 1086
MmeI TCCRAC 2 cut(s) 584, 587
MnlI CCTC 9 cut(s) 219, 303, 392, 395, 415, 446, 498, 718, 824
Mox20I TGGCCA 3 cut(s) 432, 639, 1008
Mph1103I ATGCAT 1 cut(s) 721
MscI TGGCCA 3 cut(s) 432, 639, 1008
MseI TTAA 4 cut(s) 288, 540, 630, 771
MslI CAYNNNNRTG 1 cut(s) 1065
Msp20I TGGCCA 3 cut(s) 432, 639, 1008
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 6 cut(s) 177, 476, 751, 1042, 1074, 1115
MvaI CCWGG 5 cut(s) 476, 751, 1042, 1074, 1115
MwoI GCNNNNNNNGC 3 cut(s) 163, 725, 1005
NciI CCSGG 1 cut(s) 177
NcoI CCATGG 1 cut(s) 427
NdeII GATC 3 cut(s) 274, 577, 795
NheI GCTAGC 1 cut(s) 755
NlaIII CATG 5 cut(s) 186, 352, 431, 656, 861
NlaIV GGNNCC 5 cut(s) 359, 740, 892, 957, 1036
NmuCI GTSAC 1 cut(s) 976
NsiI ATGCAT 1 cut(s) 721
PceI AGGCCT 1 cut(s) 728
PfeI GAWTC 4 cut(s) 344, 352, 778, 845
PfoI TCCNGGA 2 cut(s) 474, 1072
PkrI GCNGC 1 cut(s) 1058
PleI GAGTC 6 cut(s) 67, 227, 376, 539, 643, 1085
PpsI GAGTC 6 cut(s) 67, 227, 376, 539, 643, 1085
Ppu21I YACGTR 1 cut(s) 133
Psp1406I AACGTT 1 cut(s) 601
Psp6I CCWGG 5 cut(s) 474, 749, 1040, 1072, 1113
PspFI CCCAGC 1 cut(s) 759
PspGI CCWGG 5 cut(s) 474, 749, 1040, 1072, 1113
PspN4I GGNNCC 5 cut(s) 359, 740, 892, 957, 1036
PspOMI GGGCCC 1 cut(s) 738
PspPI GGNCC 4 cut(s) 424, 738, 739, 891
PsrI GAACNNNNNNTAC 2 cut(s) 1018, 1050
PstI CTGCAG 1 cut(s) 1058
RsaI GTAC 4 cut(s) 131, 490, 812, 1144
RsaNI GTAC 4 cut(s) 130, 489, 811, 1143
RseI CAYNNNNRTG 1 cut(s) 1065
SaqAI TTAA 4 cut(s) 288, 540, 630, 771
SatI GCNGC 1 cut(s) 1057
Sau3AI GATC 3 cut(s) 274, 577, 795
Sau96I GGNCC 4 cut(s) 424, 738, 739, 891
SchI GAGTC 6 cut(s) 68, 227, 377, 540, 643, 1086
ScrFI CCNGG 6 cut(s) 177, 476, 751, 1042, 1074, 1115
SduI GDGCHC 1 cut(s) 742
SfaNI GCATC 3 cut(s) 321, 706, 728
SfcI CTRYAG 1 cut(s) 1054
SinI GGWCC 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 1065
SmlI CTYRAG 1 cut(s) 546
SmoI CTYRAG 1 cut(s) 546
Sse9I AATT 7 cut(s) 114, 470, 497, 553, 582, 710, 991
SseBI AGGCCT 1 cut(s) 728
SsiI CCGC 4 cut(s) 164, 253, 535, 997
SspI AATATT 1 cut(s) 375
SspMI CTAG 1 cut(s) 756
StuI AGGCCT 1 cut(s) 728
StyD4I CCNGG 6 cut(s) 175, 474, 749, 1040, 1072, 1113
StyI CCWWGG 3 cut(s) 281, 427, 444
TaaI ACNGT 5 cut(s) 101, 488, 493, 1025, 1147
TaiI ACGT 2 cut(s) 135, 604
TasI AATT 7 cut(s) 114, 470, 497, 553, 582, 710, 991
TatI WGTACW 1 cut(s) 1142
TfiI GAWTC 4 cut(s) 344, 352, 778, 845
Tru1I TTAA 4 cut(s) 288, 540, 630, 771
Tru9I TTAA 4 cut(s) 288, 540, 630, 771
TscAI CASTG 3 cut(s) 12, 647, 966
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 1 cut(s) 1056
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 8 cut(s) 45, 171, 213, 365, 935, 948, 965, 1140
TspGWI ACGGA 1 cut(s) 108
TspRI CASTG 3 cut(s) 12, 647, 966
VpaK11BI GGWCC 1 cut(s) 424
XapI RAATTY 5 cut(s) 114, 470, 497, 553, 710
XspI CTAG 1 cut(s) 756
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.