RH4BG083500

Protein trichome birefringence-like 5

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG083500.1

Sequence Viewer

Length: 1542 bp
ATGGCAGTGGCAACACCCAGTAATTCTTCACCCCAAAAGAGCCGTTACGCCTTCATCGCTATCCTTTTCATCACCCTCTTCCTCTTCACCATTTTCGTCTTCACCAAACGAGCCCTTGAGCCCTCTCTCTTTCTCTACAAGGACTACTTTACTCAAATCCCCTCTTCTTCTGCTTCTGCTTCTGCATCTGCTTCTCCTTCTCCTTCTCCTTCATCTTGTTGTTCTTCAACTAACAATTCCCACATCTCTTTGTCCCAACCCACCTCTGCACCTACAGTAGACCCACCTTCTTCCTTGCTCCAATCCACCTCTGCACAACCAACCCAGGAACCCAGTTCACGAAGTGAGTTCAGCGATGAAAATGTGCAAGACCCAGATCTTGAAAATCAAAATGTGCAAGACCCAGATCGTGAAAATGAAAATGTGGAAGACCCAGACCTGAAGGAGTCCAATGACCAAAATGGTGGTGAAAATGAGAACCCAGATGGTAAAATGGGTGAAATTCCGTGTGATTTGTACGTGGGAAGTTGGGTGAGAGATGAGCAATACCCGCTTTACAAACCGGGTTCATGCCCTTATGTTGATGAAGCTTTTGATTGCCAGAGCAATGGGAGGAGAGACTCTGAGTATCTCAAATGGCGGTGGAAACCTGACGGCTGTGATCTTCCAAGGTTTAATGCAACAGATTTTTTGGTGAGGCTACGGGGTAAAAGGTTGATGCTCGTAGGAGATTCCATGAATCGGAACCAGTTTGAGTCAATATTATGCCTCCTCCGAGAAGGCTTACATAATAAGAGCAGAATGTATGAGGTCCATGGCCACAAGATATCCAAGGGAAGAGGCTATTTTGTTTTCAAATTCCAGGACTATGACTGTACGGTGGAGTTTGTGTTGTCACATTTCCTTGTGAAAGAAGGAGTCCGCTTTGATGAGCAAGGGAAGTCAAATCCAACTTTATCAATGGATCAAATTGACAAGAATGCTAAACGTTGGAAGAAGGCTGACATTCTTGTCTTTAATACTGGCCACTGGTGGGCTCATGGAAAGACTGCTCGTGGGAAAAACTACTACAAAGAAGGAGATTATCTCTATCCACAATTTGATGTATCTGAGGCCTTTAGACGGGCCCTGAAGACCTGGGCTAGCTGGGTTGAGCTTAATGTGAATCCAAAAAAGCAGTTGATCTTCTATCGTGGGTACTCTTCTTCACATTTCAGAGGTGGAGATTGGGATTCAGGTGGGTCATGCAATGGGGAAAAAGAACCAGCCTTCTCTGGGGCCATACTGGATAGCTACCCTTTAAAAATGAAGATAGTGGATGAAGTAATCAAAGAAATGAAGGTTCCAGTGAAACTATTGAATGTGACAAGGTTAACCAATTTCCGCAAGGATGGCCATCCATCAATCTACGGTCAGAAAGTTTCCACCAGGAAGGAAGACTGTAGCCATTGGTGTGTTCCTGGAGTCCCTGATGCATGGAATGAGCTCATCTATTCCACTATGGTTTTTCAGCAGACCAAATCAAAGAGTACAGTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

513

Amino Acids

58.25

Weight (kDa)

6.4

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 170 - 221 1.4e-22 PMR5 N terminal Domain
PC-Esterase PF13839 222 - 499 6.4e-97 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1010
AccI GTMKAC 1 cut(s) 279
AciI CCGC 4 cut(s) 551, 640, 922, 1384
AclI AACGTT 1 cut(s) 988
AclWI GGATC 1 cut(s) 972
AcoI YGGCCR 3 cut(s) 817, 1024, 1393
AcsI RAATTY 2 cut(s) 501, 857
AcuI CTGAAG 2 cut(s) 461, 1151
AdeI CACNNNGTG 1 cut(s) 344
AfaI GTAC 4 cut(s) 518, 877, 1199, 1531
AfiI CCNNNNNNNGG 4 cut(s) 741, 1033, 1122, 1275
AgsI TTSAA 4 cut(s) 228, 383, 856, 1360
AjnI CCWGG 5 cut(s) 324, 861, 1136, 1427, 1459
AluBI AGCT 5 cut(s) 590, 1146, 1156, 1293, 1486
AluI AGCT 5 cut(s) 590, 1146, 1156, 1293, 1486
Alw21I GWGCWC 1 cut(s) 1488
Alw26I GTCTC 1 cut(s) 612
AlwI GGATC 1 cut(s) 972
AoxI GGCC 6 cut(s) 817, 1024, 1113, 1125, 1278, 1393
ApaI GGGCCC 1 cut(s) 1129
ApoI RAATTY 2 cut(s) 501, 857
AspS9I GGNCC 4 cut(s) 811, 1125, 1126, 1278
AsuC2I CCSGG 1 cut(s) 564
AsuHPI GGTGA 8 cut(s) 21, 64, 79, 94, 479, 509, 544, 706
AsuNHI GCTAGC 1 cut(s) 1142
AvaII GGWCC 1 cut(s) 811
BaeGI GKGCMC 1 cut(s) 1129
BalI TGGCCA 3 cut(s) 819, 1026, 1395
BanII GRGCYC 5 cut(s) 115, 123, 1039, 1129, 1488
BauI CACGAG 1 cut(s) 1053
BbsI GAAGAC 4 cut(s) 91, 435, 1139, 1443
Bbv12I GWGCWC 1 cut(s) 1488
BccI CCATC 4 cut(s) 479, 1385, 1404, 1408
BceAI ACGGC 2 cut(s) 27, 670
BciT130I CCWGG 5 cut(s) 326, 863, 1138, 1429, 1461
BcnI CCSGG 1 cut(s) 564
BcoDI GTCTC 1 cut(s) 612
BfaI CTAG 1 cut(s) 1143
BfmI CTRYAG 2 cut(s) 273, 1441
BglII AGATCT 1 cut(s) 376
Bme1390I CCNGG 6 cut(s) 326, 564, 863, 1138, 1429, 1461
Bme18I GGWCC 1 cut(s) 811
BmgT120I GGNCC 4 cut(s) 811, 1125, 1126, 1278
BmiI GGNNCC 5 cut(s) 330, 746, 1127, 1279, 1344
BmrFI CCNGG 6 cut(s) 326, 564, 863, 1138, 1429, 1461
BmrI ACTGGG 2 cut(s) 12, 327
BmsI GCATC 3 cut(s) 194, 708, 1462
BmtI GCTAGC 1 cut(s) 1146
BmuI ACTGGG 2 cut(s) 12, 327
BpiI GAAGAC 4 cut(s) 91, 435, 1139, 1443
BplI GAGNNNNNCTC 2 cut(s) 1071, 1103
BpmI CTGGAG 1 cut(s) 1482
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 564
BsaAI YACGTR 1 cut(s) 520
BsaBI GATNNNNATC 1 cut(s) 1395
BsaJI CCNNGG 5 cut(s) 324, 668, 814, 831, 1137
BsaXI ACNNNNNCTCC 2 cut(s) 875, 905
Bsc4I CCNNNNNNNGG 4 cut(s) 741, 1033, 1122, 1275
Bse1I ACTGG 7 cut(s) 18, 333, 748, 1027, 1034, 1290, 1346
Bse3DI GCAATG 2 cut(s) 613, 1255
Bse8I GATNNNNATC 1 cut(s) 1395
BseBI CCWGG 5 cut(s) 326, 863, 1138, 1429, 1461
BseDI CCNNGG 5 cut(s) 324, 668, 814, 831, 1137
BseGI GGATG 3 cut(s) 1324, 1396, 1396
BseJI GATNNNNATC 1 cut(s) 1395
BseLI CCNNNNNNNGG 4 cut(s) 741, 1033, 1122, 1275
BseMI GCAATG 2 cut(s) 613, 1255
BseMII CTCAG 2 cut(s) 615, 1101
BseNI ACTGG 7 cut(s) 18, 333, 748, 1027, 1034, 1290, 1346
BseRI GAGGAG 2 cut(s) 628, 761
BseSI GKGCMC 1 cut(s) 1129
BseYI CCCAGC 1 cut(s) 1146
BsgI GTGCAG 2 cut(s) 252, 297
BshFI GGCC 6 cut(s) 819, 1026, 1115, 1127, 1280, 1395
BsiHKAI GWGCWC 1 cut(s) 1488
BsiSI CCGG 1 cut(s) 563
BslFI GGGAC 2 cut(s) 238, 1451
BslI CCNNNNNNNGG 4 cut(s) 741, 1033, 1122, 1275
BsmAI GTCTC 1 cut(s) 612
BsmFI GGGAC 2 cut(s) 238, 1451
BsmI GAATGC 1 cut(s) 985
BsnI GGCC 6 cut(s) 819, 1026, 1115, 1127, 1280, 1395
Bsp120I GGGCCC 1 cut(s) 1125
Bsp1286I GDGCHC 5 cut(s) 115, 123, 1039, 1129, 1488
Bsp143I GATC 5 cut(s) 376, 406, 661, 964, 1182
Bsp19I CCATGG 1 cut(s) 814
BspACI CCGC 4 cut(s) 551, 640, 922, 1384
BspANI GGCC 6 cut(s) 819, 1026, 1115, 1127, 1280, 1395
BspCNI CTCAG 2 cut(s) 616, 1102
BspLI GGNNCC 5 cut(s) 330, 746, 1127, 1279, 1344
BspOI GCTAGC 1 cut(s) 1146
BspPI GGATC 1 cut(s) 972
BsrDI GCAATG 2 cut(s) 613, 1255
BsrI ACTGG 7 cut(s) 18, 333, 748, 1027, 1034, 1290, 1346
BssECI CCNNGG 5 cut(s) 324, 668, 814, 831, 1137
BssMI GATC 5 cut(s) 376, 406, 661, 964, 1182
BssSI CACGAG 1 cut(s) 1053
BssT1I CCWWGG 3 cut(s) 668, 814, 831
Bst2BI CACGAG 1 cut(s) 1053
Bst2UI CCWGG 5 cut(s) 326, 863, 1138, 1429, 1461
Bst4CI ACNGT 6 cut(s) 277, 875, 880, 1412, 1442, 1534
Bst6I CTCTTC 5 cut(s) 83, 89, 169, 832, 1207
BstBAI YACGTR 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 1144
BstDEI CTNAG 2 cut(s) 624, 1110
BstDSI CCRYGG 1 cut(s) 814
BstF5I GGATG 3 cut(s) 1324, 1396, 1396
BstKTI GATC 5 cut(s) 379, 409, 664, 967, 1185
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 5 cut(s) 376, 406, 661, 964, 1182
BstMWI GCNNNNNNNGC 3 cut(s) 56, 550, 1392
BstNI CCWGG 5 cut(s) 326, 863, 1138, 1429, 1461
BstSCI CCNGG 6 cut(s) 324, 562, 861, 1136, 1427, 1459
BstSFI CTRYAG 2 cut(s) 273, 1441
BstSLI GKGCMC 1 cut(s) 1129
BstV2I GAAGAC 4 cut(s) 91, 435, 1139, 1443
BstX2I RGATCY 1 cut(s) 376
BstXI CCANNNNNNTGG 2 cut(s) 464, 608
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 6 cut(s) 819, 1026, 1115, 1127, 1280, 1395
BtgI CCRYGG 1 cut(s) 814
BtgZI GCGATG 2 cut(s) 40, 369
BtsCI GGATG 3 cut(s) 1324, 1396, 1396
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 1027, 1353
Cac8I GCNNGC 1 cut(s) 1144
Cfr13I GGNCC 4 cut(s) 811, 1125, 1126, 1278
Csp6I GTAC 4 cut(s) 517, 876, 1198, 1530
CviAII CATG 6 cut(s) 570, 736, 815, 1040, 1245, 1476
CviQI GTAC 4 cut(s) 517, 876, 1198, 1530
DdeI CTNAG 2 cut(s) 624, 1110
DpnI GATC 5 cut(s) 378, 408, 663, 966, 1184
DpnII GATC 5 cut(s) 376, 406, 661, 964, 1182
DraI TTTAAA 1 cut(s) 1302
DraIII CACNNNGTG 1 cut(s) 344
DrdI GACNNNNNNGTC 1 cut(s) 1010
DseDI GACNNNNNNGTC 1 cut(s) 1010
EaeI YGGCCR 3 cut(s) 817, 1024, 1393
Eam1104I CTCTTC 5 cut(s) 83, 89, 169, 832, 1207
EarI CTCTTC 5 cut(s) 83, 89, 169, 832, 1207
Ecl136II GAGCTC 1 cut(s) 1486
Eco130I CCWWGG 3 cut(s) 668, 814, 831
Eco147I AGGCCT 1 cut(s) 1115
Eco24I GRGCYC 5 cut(s) 115, 123, 1039, 1129, 1488
Eco32I GATATC 1 cut(s) 828
Eco47I GGWCC 1 cut(s) 811
Eco53kI GAGCTC 1 cut(s) 1486
Eco57I CTGAAG 2 cut(s) 461, 1151
EcoICRI GAGCTC 1 cut(s) 1486
EcoO109I RGGNCCY 1 cut(s) 1126
EcoRII CCWGG 5 cut(s) 324, 861, 1136, 1427, 1459
EcoRV GATATC 1 cut(s) 828
EcoT14I CCWWGG 3 cut(s) 668, 814, 831
EcoT22I ATGCAT 1 cut(s) 1477
EcoT38I GRGCYC 5 cut(s) 115, 123, 1039, 1129, 1488
ErhI CCWWGG 3 cut(s) 668, 814, 831
FaeI CATG 6 cut(s) 573, 739, 818, 1043, 1248, 1479
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 2 cut(s) 238, 1451
FatI CATG 6 cut(s) 569, 735, 814, 1039, 1244, 1475
FauI CCCGC 1 cut(s) 558
FblI GTMKAC 1 cut(s) 279
FokI GGATG 3 cut(s) 1331, 1383, 1403
FriOI GRGCYC 5 cut(s) 115, 123, 1039, 1129, 1488
FspBI CTAG 1 cut(s) 1143
GsaI CCCAGC 1 cut(s) 1150
GsuI CTGGAG 1 cut(s) 1482
HaeIII GGCC 6 cut(s) 819, 1026, 1115, 1127, 1280, 1395
HapII CCGG 1 cut(s) 563
Hin1II CATG 6 cut(s) 573, 739, 818, 1043, 1248, 1479
HincII GTYRAC 1 cut(s) 1374
HindII GTYRAC 1 cut(s) 1374
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 9 cut(s) 446, 620, 731, 739, 755, 918, 1165, 1232, 1464
HpaI GTTAAC 1 cut(s) 1374
HpaII CCGG 1 cut(s) 563
HphI GGTGA 8 cut(s) 21, 64, 79, 94, 479, 509, 544, 706
Hpy166II GTNNAC 3 cut(s) 280, 338, 1374
Hpy188I TCNGA 6 cut(s) 625, 744, 776, 1111, 1217, 1416
Hpy188III TCNNGA 3 cut(s) 339, 380, 410
Hpy8I GTNNAC 3 cut(s) 280, 338, 1374
HpyCH4III ACNGT 6 cut(s) 277, 875, 880, 1412, 1442, 1534
HpyCH4IV ACGT 2 cut(s) 519, 988
HpyCH4V TGCA 8 cut(s) 185, 269, 314, 367, 397, 680, 1248, 1475
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 550, 1392
HpyF3I CTNAG 2 cut(s) 624, 1110
HpySE526I ACGT 2 cut(s) 519, 988
Hsp92II CATG 6 cut(s) 573, 739, 818, 1043, 1248, 1479
KspAI GTTAAC 1 cut(s) 1374
Kzo9I GATC 5 cut(s) 376, 406, 661, 964, 1182
LmnI GCTCC 1 cut(s) 303
LweI GCATC 3 cut(s) 194, 708, 1462
MaeI CTAG 1 cut(s) 1143
MaeII ACGT 2 cut(s) 519, 988
MaeIII GTNAC 3 cut(s) 44, 894, 1363
MalI GATC 5 cut(s) 378, 408, 663, 966, 1184
MboI GATC 5 cut(s) 376, 406, 661, 964, 1182
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 5 cut(s) 115, 123, 1039, 1129, 1488
MlsI TGGCCA 3 cut(s) 819, 1026, 1395
MluCI AATT 7 cut(s) 22, 235, 501, 857, 969, 1097, 1378
MluNI TGGCCA 3 cut(s) 819, 1026, 1395
MlyI GAGTC 5 cut(s) 455, 614, 764, 927, 1473
MmeI TCCRAC 2 cut(s) 971, 974
Mox20I TGGCCA 3 cut(s) 819, 1026, 1395
Mph1103I ATGCAT 1 cut(s) 1477
MscI TGGCCA 3 cut(s) 819, 1026, 1395
MseI TTAA 5 cut(s) 675, 1017, 1158, 1301, 1373
MslI CAYNNNNRTG 1 cut(s) 1452
Msp20I TGGCCA 3 cut(s) 819, 1026, 1395
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 6 cut(s) 326, 564, 863, 1138, 1429, 1461
Mva1269I GAATGC 1 cut(s) 985
MvaI CCWGG 5 cut(s) 326, 863, 1138, 1429, 1461
MwoI GCNNNNNNNGC 3 cut(s) 56, 550, 1392
NciI CCSGG 1 cut(s) 564
NcoI CCATGG 1 cut(s) 814
NdeII GATC 5 cut(s) 376, 406, 661, 964, 1182
NheI GCTAGC 1 cut(s) 1142
NlaIII CATG 6 cut(s) 573, 739, 818, 1043, 1248, 1479
NlaIV GGNNCC 5 cut(s) 330, 746, 1127, 1279, 1344
NmuCI GTSAC 2 cut(s) 894, 1363
NsiI ATGCAT 1 cut(s) 1477
PceI AGGCCT 1 cut(s) 1115
PctI GAATGC 1 cut(s) 985
PfeI GAWTC 4 cut(s) 731, 739, 1165, 1232
PfoI TCCNGGA 2 cut(s) 861, 1459
PleI GAGTC 5 cut(s) 454, 614, 763, 926, 1472
PpsI GAGTC 5 cut(s) 454, 614, 763, 926, 1472
Ppu21I YACGTR 1 cut(s) 520
Psp124BI GAGCTC 1 cut(s) 1488
Psp1406I AACGTT 1 cut(s) 988
Psp6I CCWGG 5 cut(s) 324, 861, 1136, 1427, 1459
PspFI CCCAGC 1 cut(s) 1146
PspGI CCWGG 5 cut(s) 324, 861, 1136, 1427, 1459
PspN4I GGNNCC 5 cut(s) 330, 746, 1127, 1279, 1344
PspOMI GGGCCC 1 cut(s) 1125
PspPI GGNCC 4 cut(s) 811, 1125, 1126, 1278
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 4 cut(s) 518, 877, 1199, 1531
RsaNI GTAC 4 cut(s) 517, 876, 1198, 1530
RseI CAYNNNNRTG 1 cut(s) 1452
SacI GAGCTC 1 cut(s) 1488
SaqAI TTAA 5 cut(s) 675, 1017, 1158, 1301, 1373
Sau3AI GATC 5 cut(s) 376, 406, 661, 964, 1182
Sau96I GGNCC 4 cut(s) 811, 1125, 1126, 1278
SchI GAGTC 5 cut(s) 455, 614, 764, 927, 1473
ScrFI CCNGG 6 cut(s) 326, 564, 863, 1138, 1429, 1461
SduI GDGCHC 5 cut(s) 115, 123, 1039, 1129, 1488
SfaNI GCATC 3 cut(s) 194, 708, 1462
SfcI CTRYAG 2 cut(s) 273, 1441
SinI GGWCC 1 cut(s) 811
SmiMI CAYNNNNRTG 1 cut(s) 1452
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 7 cut(s) 22, 235, 501, 857, 969, 1097, 1378
SseBI AGGCCT 1 cut(s) 1115
SsiI CCGC 4 cut(s) 551, 640, 922, 1384
SspI AATATT 1 cut(s) 762
SspMI CTAG 1 cut(s) 1143
SstI GAGCTC 1 cut(s) 1488
StuI AGGCCT 1 cut(s) 1115
StyD4I CCNGG 6 cut(s) 324, 562, 861, 1136, 1427, 1459
StyI CCWWGG 3 cut(s) 668, 814, 831
TaaI ACNGT 6 cut(s) 277, 875, 880, 1412, 1442, 1534
TaiI ACGT 2 cut(s) 522, 991
TasI AATT 7 cut(s) 22, 235, 501, 857, 969, 1097, 1378
TatI WGTACW 1 cut(s) 1529
TfiI GAWTC 4 cut(s) 731, 739, 1165, 1232
Tru1I TTAA 5 cut(s) 675, 1017, 1158, 1301, 1373
Tru9I TTAA 5 cut(s) 675, 1017, 1158, 1301, 1373
TscAI CASTG 3 cut(s) 12, 1034, 1353
TseFI GTSAC 2 cut(s) 894, 1363
Tsp45I GTSAC 2 cut(s) 894, 1363
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 3 cut(s) 12, 1034, 1353
VpaK11BI GGWCC 1 cut(s) 811
XapI RAATTY 2 cut(s) 501, 857
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 1 cut(s) 1143
Zsp2I ATGCAT 1 cut(s) 1477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.