Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008805

Physical Location & Seq

Genomic Coordinates Reverse (-)

12987429 .. 12991840

Gene Structure 4412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCAGTGGCAACACCCAGTAATTCCTCCCCCCAAAAGAGCCGTTACGCCTTCATCGCTATCATTTTCATCACCATCTTCCTCTTCACCATTTTCGTCTTCACCAAACGAGCTCCTGAGCAATCTCTCTTTCTTTACAAGGACCACTTTACCCAAATCCCCTTTTCTTCTTCTTCTCCTTCTTCAACTAACAATTCCCACGTCTCTGAGAGCTCTGACCTGAAGGACTCCAATGACCAAAATGGTGGTGAAAATGAGAACCCAGATGGTGAAATGGGTGAAATTCCGTGTGATTTGTACGTGGGAAGTTGGGTGAGAGATGAGCAATACCCGCTTTACAAACCGGGTTCATGCCCTTATGTTGATGAAGCTTTTGATTGCCAGAGCAATGGGAGGAGAGACTCTGAGTATCTCAAATGGCGGTGGAAACCTGACGGCTGTGATCTTCCAAGTTATGTTGTTGATGCAGAACTTACAGACATGGTATCAAGATATCAATACTATGATGACTATGACTGTACGGTGGAGTTTGTGTTGTCACATTTCCTTGTGAAAGAAGGAGTCCGCTTTGATGAGCAAGGGAAGTCAAATCCAACTCTATCAATGGATCAAATTGACAAGAATGCTAAACGTTGGAAGAAGGCTGACATTCTTGTCTTTAATACTGGCCACTGGTGGGCTCATGGAAAGACTGCTCGTGGGAAAAACTACTACAAAGAAGGAGATTATCTCTATCCACAATTTGATGTATCTGAGGCCTTTAGACGGGCCCTGAAGACCTGGGCTAGCTGGGTTGAGCTTAATGTGAATCCAAAAAAGCAGTTGATCTTCTATCGTGGGTACTCTTCTTCACATTTCAGAGGTGGAGATTGGGATTCAGGTGGGTCATGCAGTGGGGAAAAAGAACCAGCCTTCTCTGGGGCCATACTGGATAGCTACCCTTTAAAAATGAAGATAGTGGATGAAGTGATCAAAGAAATGAAGGTTCCAGTGAAACTATTGAATGTGACAAGGTTAACCAATTTCCGCAAGGATGGCCATCCATCAATCTACGGTCAGAAAGTTTCCACCAGGAAGGAAGACTGTAGCCATTGGTGTGTTCCTGGAGTCCCTGATGCATGGAATGAGCTCATCTATGCCACTATGGTTTTTCAGCAGACCAAATCAAAGAGTACAGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

394

Amino Acids

45.12

Weight (kDa)

5.96

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	97 - 148	9.6e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	164 - 380	9.7e-72	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20590 AT5G20590
fragaria_vesca	FvH4_4g06600
malus_domestica	MD16G1241800.v1.1
prunus_persica	Prupe.1G068600_v2.0.a1 Prupe.1G068600_v2.0.a1
pyrus_communis	pycom16g20260
rosa_chinensis	RchiOBHm_Chr4g0398501 RchiOBHm_Chr4g0398521
rosa_laevigata	RLG00000009351 RLG00000009358
rosa_multiflora	Rmu_sc0007985.1_g000006 Rmu_ssc0000240.1_g000023
rosa_roxburghii	Rroxscaffold_5G00343470 Rroxscaffold_5G00343480
rosa_rugosa	Rorug04G0008800
rosa_samantha	Rh4AG086900 Rh4BG083500 Rh4CG094900 Rh4CG095000 Rh4DG078300
rosa_wichuraiana	Rw4G007240 Rw4G007250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	653
AciI	CCGC	4 cut(s)	332, 421, 565, 1027
AclI	AACGTT	1 cut(s)	631
AclWI	GGATC	1 cut(s)	615
AcoI	YGGCCR	2 cut(s)	667, 1036
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	2 cut(s)	242, 794
AfaI	GTAC	4 cut(s)	299, 520, 842, 1174
AfiI	CCNNNNNNNGG	3 cut(s)	676, 765, 918
AgsI	TTSAA	2 cut(s)	186, 1003
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	3 cut(s)	779, 1070, 1102
AluBI	AGCT	7 cut(s)	113, 213, 371, 789, 799, 936, 1129
AluI	AGCT	7 cut(s)	113, 213, 371, 789, 799, 936, 1129
Alw21I	GWGCWC	3 cut(s)	115, 215, 1131
Alw26I	GTCTC	2 cut(s)	208, 393
AlwI	GGATC	1 cut(s)	615
AoxI	GGCC	5 cut(s)	667, 756, 768, 921, 1036
ApaI	GGGCCC	1 cut(s)	772
ApoI	RAATTY	1 cut(s)	282
AspS9I	GGNCC	4 cut(s)	142, 768, 769, 921
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	7 cut(s)	64, 79, 94, 260, 281, 290, 325
AsuNHI	GCTAGC	1 cut(s)	785
AvaII	GGWCC	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	772
BalI	TGGCCA	2 cut(s)	669, 1038
BanII	GRGCYC	5 cut(s)	115, 215, 682, 772, 1131
BauI	CACGAG	1 cut(s)	696
BbsI	GAAGAC	3 cut(s)	91, 782, 1086
Bbv12I	GWGCWC	3 cut(s)	115, 215, 1131
BccI	CCATC	5 cut(s)	83, 260, 1028, 1047, 1051
BceAI	ACGGC	2 cut(s)	27, 451
BciT130I	CCWGG	3 cut(s)	781, 1072, 1104
BclI	TGATCA	1 cut(s)	969
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	208, 393
BfaI	CTAG	1 cut(s)	786
BfmI	CTRYAG	1 cut(s)	1084
Bme1390I	CCNGG	4 cut(s)	345, 781, 1072, 1104
Bme18I	GGWCC	1 cut(s)	142
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	4 cut(s)	142, 768, 769, 921
BmiI	GGNNCC	3 cut(s)	770, 922, 987
BmrFI	CCNGG	4 cut(s)	345, 781, 1072, 1104
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	2 cut(s)	454, 1105
BmtI	GCTAGC	1 cut(s)	789
BmuI	ACTGGG	1 cut(s)	12
BpiI	GAAGAC	3 cut(s)	91, 782, 1086
BplI	GAGNNNNNCTC	2 cut(s)	714, 746
BpmI	CTGGAG	1 cut(s)	1125
Bpu10I	CCTNAGC	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	301
BsaBI	GATNNNNATC	1 cut(s)	1038
BsaJI	CCNNGG	1 cut(s)	780
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	3 cut(s)	676, 765, 918
Bse1I	ACTGG	5 cut(s)	18, 670, 677, 933, 989
Bse3DI	GCAATG	1 cut(s)	394
Bse8I	GATNNNNATC	1 cut(s)	1038
BseBI	CCWGG	3 cut(s)	781, 1072, 1104
BseDI	CCNNGG	1 cut(s)	780
BseGI	GGATG	3 cut(s)	967, 1039, 1039
BseJI	GATNNNNATC	1 cut(s)	1038
BseLI	CCNNNNNNNGG	3 cut(s)	676, 765, 918
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	4 cut(s)	108, 198, 396, 744
BseNI	ACTGG	5 cut(s)	18, 670, 677, 933, 989
BseRI	GAGGAG	1 cut(s)	409
BseSI	GKGCMC	1 cut(s)	772
BseYI	CCCAGC	1 cut(s)	789
BshFI	GGCC	5 cut(s)	669, 758, 770, 923, 1038
BsiHKAI	GWGCWC	3 cut(s)	115, 215, 1131
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	1094
BslI	CCNNNNNNNGG	3 cut(s)	676, 765, 918
BsmAI	GTCTC	2 cut(s)	208, 393
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	1094
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	5 cut(s)	669, 758, 770, 923, 1038
Bsp120I	GGGCCC	1 cut(s)	768
Bsp1286I	GDGCHC	5 cut(s)	115, 215, 682, 772, 1131
Bsp143I	GATC	4 cut(s)	442, 607, 825, 969
BspACI	CCGC	4 cut(s)	332, 421, 565, 1027
BspANI	GGCC	5 cut(s)	669, 758, 770, 923, 1038
BspCNI	CTCAG	4 cut(s)	109, 199, 397, 745
BspLI	GGNNCC	3 cut(s)	770, 922, 987
BspOI	GCTAGC	1 cut(s)	789
BspPI	GGATC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	394
BsrI	ACTGG	5 cut(s)	18, 670, 677, 933, 989
BssECI	CCNNGG	1 cut(s)	780
BssMI	GATC	4 cut(s)	442, 607, 825, 969
BssSI	CACGAG	1 cut(s)	696
Bst2BI	CACGAG	1 cut(s)	696
Bst2UI	CCWGG	3 cut(s)	781, 1072, 1104
Bst4CI	ACNGT	5 cut(s)	518, 523, 1055, 1085, 1177
Bst6I	CTCTTC	2 cut(s)	89, 850
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	787
BstDEI	CTNAG	4 cut(s)	117, 207, 405, 753
BstF5I	GGATG	3 cut(s)	967, 1039, 1039
BstKTI	GATC	4 cut(s)	445, 610, 828, 972
BstMAI	GTCTC	2 cut(s)	208, 393
BstMBI	GATC	4 cut(s)	442, 607, 825, 969
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 331, 1035
BstNI	CCWGG	3 cut(s)	781, 1072, 1104
BstSCI	CCNGG	4 cut(s)	343, 779, 1070, 1102
BstSFI	CTRYAG	1 cut(s)	1084
BstSLI	GKGCMC	1 cut(s)	772
BstV2I	GAAGAC	3 cut(s)	91, 782, 1086
BstXI	CCANNNNNNTGG	2 cut(s)	245, 389
BsuRI	GGCC	5 cut(s)	669, 758, 770, 923, 1038
BtgZI	GCGATG	1 cut(s)	40
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	3 cut(s)	967, 1039, 1039
BtsI	GCAGTG	2 cut(s)	12, 898
BtsIMutI	CAGTG	4 cut(s)	12, 670, 898, 996
Cac8I	GCNNGC	1 cut(s)	787
Cfr13I	GGNCC	4 cut(s)	142, 768, 769, 921
Csp6I	GTAC	4 cut(s)	298, 519, 841, 1173
CviAII	CATG	5 cut(s)	351, 481, 683, 888, 1119
CviQI	GTAC	4 cut(s)	298, 519, 841, 1173
DdeI	CTNAG	4 cut(s)	117, 207, 405, 753
DpnI	GATC	4 cut(s)	444, 609, 827, 971
DpnII	GATC	4 cut(s)	442, 607, 825, 969
DraI	TTTAAA	1 cut(s)	945
DrdI	GACNNNNNNGTC	1 cut(s)	653
DseDI	GACNNNNNNGTC	1 cut(s)	653
EaeI	YGGCCR	2 cut(s)	667, 1036
Eam1104I	CTCTTC	2 cut(s)	89, 850
EarI	CTCTTC	2 cut(s)	89, 850
Ecl136II	GAGCTC	3 cut(s)	113, 213, 1129
Eco147I	AGGCCT	1 cut(s)	758
Eco24I	GRGCYC	5 cut(s)	115, 215, 682, 772, 1131
Eco32I	GATATC	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	142
Eco53kI	GAGCTC	3 cut(s)	113, 213, 1129
Eco57I	CTGAAG	2 cut(s)	242, 794
EcoICRI	GAGCTC	3 cut(s)	113, 213, 1129
EcoO109I	RGGNCCY	1 cut(s)	769
EcoRII	CCWGG	3 cut(s)	779, 1070, 1102
EcoRV	GATATC	1 cut(s)	494
EcoT22I	ATGCAT	1 cut(s)	1120
EcoT38I	GRGCYC	5 cut(s)	115, 215, 682, 772, 1131
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	5 cut(s)	354, 484, 686, 891, 1122
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	1 cut(s)	1094
FatI	CATG	5 cut(s)	350, 480, 682, 887, 1118
FauI	CCCGC	1 cut(s)	339
FbaI	TGATCA	1 cut(s)	969
FokI	GGATG	3 cut(s)	974, 1026, 1046
FriOI	GRGCYC	5 cut(s)	115, 215, 682, 772, 1131
FspBI	CTAG	1 cut(s)	786
GsaI	CCCAGC	1 cut(s)	793
GsuI	CTGGAG	1 cut(s)	1125
HaeIII	GGCC	5 cut(s)	669, 758, 770, 923, 1038
HapII	CCGG	1 cut(s)	344
Hin1II	CATG	5 cut(s)	354, 484, 686, 891, 1122
HincII	GTYRAC	1 cut(s)	1017
HindII	GTYRAC	1 cut(s)	1017
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	6 cut(s)	227, 401, 561, 808, 875, 1107
HpaI	GTTAAC	1 cut(s)	1017
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	7 cut(s)	64, 79, 94, 260, 281, 290, 325
Hpy166II	GTNNAC	1 cut(s)	1017
Hpy188I	TCNGA	6 cut(s)	208, 217, 406, 754, 860, 1059
Hpy188III	TCNNGA	2 cut(s)	116, 489
Hpy8I	GTNNAC	1 cut(s)	1017
HpyAV	CCTTC	9 cut(s)	61, 189, 217, 551, 634, 713, 922, 976, 1069
HpyCH4III	ACNGT	5 cut(s)	518, 523, 1055, 1085, 1177
HpyCH4IV	ACGT	3 cut(s)	201, 300, 631
HpyCH4V	TGCA	3 cut(s)	467, 891, 1118
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 331, 1035
HpyF3I	CTNAG	4 cut(s)	117, 207, 405, 753
HpySE526I	ACGT	3 cut(s)	201, 300, 631
Hsp92II	CATG	5 cut(s)	354, 484, 686, 891, 1122
Ksp22I	TGATCA	1 cut(s)	969
KspAI	GTTAAC	1 cut(s)	1017
Kzo9I	GATC	4 cut(s)	442, 607, 825, 969
LmnI	GCTCC	1 cut(s)	118
LweI	GCATC	2 cut(s)	454, 1105
MaeI	CTAG	1 cut(s)	786
MaeII	ACGT	3 cut(s)	201, 300, 631
MaeIII	GTNAC	3 cut(s)	44, 537, 1006
MalI	GATC	4 cut(s)	444, 609, 827, 971
MboI	GATC	4 cut(s)	442, 607, 825, 969
MhlI	GDGCHC	5 cut(s)	115, 215, 682, 772, 1131
MlsI	TGGCCA	2 cut(s)	669, 1038
MluCI	AATT	6 cut(s)	22, 193, 282, 612, 740, 1021
MluNI	TGGCCA	2 cut(s)	669, 1038
MlyI	GAGTC	4 cut(s)	221, 395, 570, 1116
MmeI	TCCRAC	2 cut(s)	614, 617
MnlI	CCTC	5 cut(s)	37, 92, 387, 748, 854
Mox20I	TGGCCA	2 cut(s)	669, 1038
Mph1103I	ATGCAT	1 cut(s)	1120
MscI	TGGCCA	2 cut(s)	669, 1038
MseI	TTAA	4 cut(s)	660, 801, 944, 1016
MslI	CAYNNNNRTG	1 cut(s)	1095
Msp20I	TGGCCA	2 cut(s)	669, 1038
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	4 cut(s)	345, 781, 1072, 1104
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	3 cut(s)	781, 1072, 1104
MwoI	GCNNNNNNNGC	3 cut(s)	56, 331, 1035
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	4 cut(s)	442, 607, 825, 969
NheI	GCTAGC	1 cut(s)	785
NlaIII	CATG	5 cut(s)	354, 484, 686, 891, 1122
NlaIV	GGNNCC	3 cut(s)	770, 922, 987
NmuCI	GTSAC	2 cut(s)	537, 1006
NsiI	ATGCAT	1 cut(s)	1120
PceI	AGGCCT	1 cut(s)	758
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	2 cut(s)	808, 875
PfoI	TCCNGGA	1 cut(s)	1102
PleI	GAGTC	4 cut(s)	221, 395, 569, 1115
PpsI	GAGTC	4 cut(s)	221, 395, 569, 1115
Ppu21I	YACGTR	1 cut(s)	301
Psp124BI	GAGCTC	3 cut(s)	115, 215, 1131
Psp1406I	AACGTT	1 cut(s)	631
Psp6I	CCWGG	3 cut(s)	779, 1070, 1102
PspFI	CCCAGC	1 cut(s)	789
PspGI	CCWGG	3 cut(s)	779, 1070, 1102
PspN4I	GGNNCC	3 cut(s)	770, 922, 987
PspOMI	GGGCCC	1 cut(s)	768
PspPI	GGNCC	4 cut(s)	142, 768, 769, 921
RsaI	GTAC	4 cut(s)	299, 520, 842, 1174
RsaNI	GTAC	4 cut(s)	298, 519, 841, 1173
RseI	CAYNNNNRTG	1 cut(s)	1095
SacI	GAGCTC	3 cut(s)	115, 215, 1131
SaqAI	TTAA	4 cut(s)	660, 801, 944, 1016
Sau3AI	GATC	4 cut(s)	442, 607, 825, 969
Sau96I	GGNCC	4 cut(s)	142, 768, 769, 921
SchI	GAGTC	4 cut(s)	221, 395, 570, 1116
ScrFI	CCNGG	4 cut(s)	345, 781, 1072, 1104
SduI	GDGCHC	5 cut(s)	115, 215, 682, 772, 1131
SfaNI	GCATC	2 cut(s)	454, 1105
SfcI	CTRYAG	1 cut(s)	1084
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	1095
Sse9I	AATT	6 cut(s)	22, 193, 282, 612, 740, 1021
SseBI	AGGCCT	1 cut(s)	758
SsiI	CCGC	4 cut(s)	332, 421, 565, 1027
SspMI	CTAG	1 cut(s)	786
SstI	GAGCTC	3 cut(s)	115, 215, 1131
StuI	AGGCCT	1 cut(s)	758
StyD4I	CCNGG	4 cut(s)	343, 779, 1070, 1102
TaaI	ACNGT	5 cut(s)	518, 523, 1055, 1085, 1177
TaiI	ACGT	3 cut(s)	204, 303, 634
TasI	AATT	6 cut(s)	22, 193, 282, 612, 740, 1021
TatI	WGTACW	1 cut(s)	1172
TfiI	GAWTC	2 cut(s)	808, 875
Tru1I	TTAA	4 cut(s)	660, 801, 944, 1016
Tru9I	TTAA	4 cut(s)	660, 801, 944, 1016
TscAI	CASTG	4 cut(s)	12, 677, 898, 996
TseFI	GTSAC	2 cut(s)	537, 1006
Tsp45I	GTSAC	2 cut(s)	537, 1006
TspDTI	ATGAA	8 cut(s)	43, 58, 339, 381, 965, 978, 995, 1170
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	4 cut(s)	12, 677, 898, 996
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	282
XspI	CTAG	1 cut(s)	786
Zsp2I	ATGCAT	1 cut(s)	1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.