Rw4G007250

Protein trichome birefringence-like 5

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
15173202 .. 15178407
5206 bp
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UTR
Exon/CDS
Intron
Rw4G007250.1

Sequence Viewer

Length: 1551 bp
ATGGCAGTGGCAACACCCGGTAATTCTACCCCCCAAAAGAGCCGTTACGCCTTCATCGCTATCCTATTCATCACCCTCTTCCTCTTCACCATTTTCGTCTTCACCAAACGAGCCCTTGATCCCTCTCTCTTTCTCTACAAGGACTACTTTACCCAAATCCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTGCTGCTGCTTCTCCTTCATCTTCTTCGTCTTCAACTAACAATTCCCAAATCTCTTTGTCCCAATCCACCTCTGCACCTACAGCAGACCCACCTTCTTCTTTGCTCCAATCCACCTCTGCACAACCAACCCAGGAACCCAGTTCACGAAGTGAGTTCAGCGATGAAAATGTGCAAGACCCAGATCTTGAAAATCAAAATGTGCAAGACCCAGATCGTGAAAATCAAAATGTGGAAGACCCAGACCTGAAGGAGTCCAATGACCAAAATGGTGGTGAAAATGAGAACCCAGATGGTAAAATGGGTGAAATTCCGTGTGATTTGTACGTGGGAAGTTGGGTGAGAGATGAGCAATACCCGCTTTACAAACCGGGTTCATGCCCTTATGTTGATGAAGCTTTTGATTGCCAGAGCAATGGGAGGAGAGACTCTGAGTATCTCAAATGGCGGTGGAAACCTGACGGCTGTGATCTTCCAAGGTTTAATGCAACAGATTTTTTGGTGAGGCTACGGGGTAAAAGGTTGATGCTCGTAGGAGATTCCATGAATCGGAACCAGTTTGAGTCAATATTATGCCTCCTCCGAGAAGGCTTACATAATAAGAGCAGAATGTATGAGGTCCATGGCCACAAGATATCCAAGGGAAGAGGCTATTTTGTTTTCAAATTCCAGGACTATGACTGTACGGTGGAATTTGTGAGGTCGCATTTCCTTGTGAAAGAAGGAGTCCGCTTTAATGCTCAAGGGAATTCAAATCCAACTCTATCAATGGATCAAATTGACAAGACAGCTAAACGTTGGAAGAAGGCTGACATTCTTGTCTTTAATACTGGCCACTGGTGGACTCATGGAAAGACTGCTCGTGGGAAAAACTACTACAAAGAAGGAGATTATCTCTATCCAAAATTTGATGCATCTGAGGCCTATAGACGGGCCCTGAAGACCTGGGCTAGCTGGGTTGAGCTTAATGTGAATCCAAAAAAGCAGTTGGTCTTCTATCGTGGGTACTCTTCTTCACATTTCAGAGGTGGAGATTGGGATTCAGGTGGGTCATGCAATGGTGAAAAAGAACCAGCCTTCTCTGGGGCCATACTGGATAGCTACCCTTTGAAAATGAAGATAGTGGATGAAGTAATCAAAGAAATGAAGGTTCCAGTGAAAGTATTGAATGTGACAAGGTTGACCAATTTCCGCAAAGATGGCCATCCATCAATCTACGGTAAGAAAGGTTCCACCAGGAAGCAAGACTGCAGCCATTGGTGTGTTCCTGGAGTCCCTGATGCATGGAATGAGCTAATCTATGCCACTCTGGTTTTTCAGCAGACCAAATCAAAGAGTACAGTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

516

Amino Acids

58.25

Weight (kDa)

8.2

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 173 - 224 1.4e-22 PMR5 N terminal Domain
PC-Esterase PF13839 225 - 502 1.4e-98 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1019
AciI CCGC 4 cut(s) 560, 649, 931, 1393
AclI AACGTT 1 cut(s) 997
AclWI GGATC 2 cut(s) 113, 981
AcoI YGGCCR 3 cut(s) 826, 1033, 1402
AcsI RAATTY 5 cut(s) 510, 866, 893, 949, 1106
AcuI CTGAAG 2 cut(s) 470, 1160
AdeI CACNNNGTG 1 cut(s) 353
AfaI GTAC 4 cut(s) 527, 886, 1208, 1540
AfiI CCNNNNNNNGG 3 cut(s) 750, 1131, 1284
AgsI TTSAA 6 cut(s) 237, 392, 865, 954, 1312, 1369
AjnI CCWGG 5 cut(s) 333, 870, 1145, 1436, 1468
AluBI AGCT 6 cut(s) 599, 992, 1155, 1165, 1302, 1495
AluI AGCT 6 cut(s) 599, 992, 1155, 1165, 1302, 1495
Alw26I GTCTC 1 cut(s) 621
AlwI GGATC 2 cut(s) 113, 981
AoxI GGCC 6 cut(s) 826, 1033, 1122, 1134, 1287, 1402
ApaI GGGCCC 1 cut(s) 1138
ApeKI GCWGC 4 cut(s) 203, 206, 209, 1452
ApoI RAATTY 5 cut(s) 510, 866, 893, 949, 1106
AspS9I GGNCC 4 cut(s) 820, 1134, 1135, 1287
AsuC2I CCSGG 2 cut(s) 18, 573
AsuHPI GGTGA 8 cut(s) 64, 79, 94, 488, 518, 553, 715, 1274
AsuNHI GCTAGC 1 cut(s) 1151
AvaII GGWCC 1 cut(s) 820
BaeGI GKGCMC 1 cut(s) 1138
BalI TGGCCA 3 cut(s) 828, 1035, 1404
BanII GRGCYC 2 cut(s) 115, 1138
BauI CACGAG 1 cut(s) 1062
BbsI GAAGAC 5 cut(s) 91, 225, 444, 1148, 1186
BbvI GCAGC 4 cut(s) 190, 193, 196, 1464
BccI CCATC 4 cut(s) 488, 1394, 1413, 1417
BceAI ACGGC 2 cut(s) 27, 679
BciT130I CCWGG 5 cut(s) 335, 872, 1147, 1438, 1470
BcnI CCSGG 2 cut(s) 18, 573
BcoDI GTCTC 1 cut(s) 621
BfaI CTAG 1 cut(s) 1152
BfmI CTRYAG 3 cut(s) 282, 1126, 1450
BglII AGATCT 1 cut(s) 385
BisI GCNGC 4 cut(s) 204, 207, 210, 1453
BlsI GCNGC 4 cut(s) 205, 208, 211, 1454
Bme1390I CCNGG 7 cut(s) 18, 335, 573, 872, 1147, 1438, 1470
Bme18I GGWCC 1 cut(s) 820
BmgT120I GGNCC 4 cut(s) 820, 1134, 1135, 1287
BmiI GGNNCC 6 cut(s) 339, 755, 1136, 1288, 1353, 1432
BmrFI CCNGG 7 cut(s) 18, 335, 573, 872, 1147, 1438, 1470
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 4 cut(s) 717, 1102, 1124, 1471
BmtI GCTAGC 1 cut(s) 1155
BmuI ACTGGG 1 cut(s) 336
BpiI GAAGAC 5 cut(s) 91, 225, 444, 1148, 1186
BplI GAGNNNNNCTC 2 cut(s) 1080, 1112
BpmI CTGGAG 1 cut(s) 1491
BpuEI CTTGAG 1 cut(s) 927
BpuMI CCSGG 2 cut(s) 18, 573
BsaAI YACGTR 1 cut(s) 529
BsaBI GATNNNNATC 1 cut(s) 1404
BsaJI CCNNGG 5 cut(s) 333, 677, 823, 840, 1146
Bsc4I CCNNNNNNNGG 3 cut(s) 750, 1131, 1284
Bse1I ACTGG 6 cut(s) 342, 757, 1036, 1043, 1299, 1355
Bse3DI GCAATG 2 cut(s) 622, 1264
Bse8I GATNNNNATC 1 cut(s) 1404
BseBI CCWGG 5 cut(s) 335, 872, 1147, 1438, 1470
BseDI CCNNGG 5 cut(s) 333, 677, 823, 840, 1146
BseGI GGATG 2 cut(s) 1333, 1405
BseJI GATNNNNATC 1 cut(s) 1404
BseLI CCNNNNNNNGG 3 cut(s) 750, 1131, 1284
BseMI GCAATG 2 cut(s) 622, 1264
BseMII CTCAG 2 cut(s) 624, 1110
BseNI ACTGG 6 cut(s) 342, 757, 1036, 1043, 1299, 1355
BseRI GAGGAG 2 cut(s) 637, 770
BseSI GKGCMC 1 cut(s) 1138
BseXI GCAGC 4 cut(s) 190, 193, 196, 1464
BseYI CCCAGC 1 cut(s) 1155
BsgI GTGCAG 2 cut(s) 261, 306
BshFI GGCC 6 cut(s) 828, 1035, 1124, 1136, 1289, 1404
BsiSI CCGG 2 cut(s) 18, 572
BslFI GGGAC 2 cut(s) 247, 1460
BslI CCNNNNNNNGG 3 cut(s) 750, 1131, 1284
BsmAI GTCTC 1 cut(s) 621
BsmFI GGGAC 2 cut(s) 247, 1460
BsnI GGCC 6 cut(s) 828, 1035, 1124, 1136, 1289, 1404
Bsp120I GGGCCC 1 cut(s) 1134
Bsp1286I GDGCHC 2 cut(s) 115, 1138
Bsp143I GATC 5 cut(s) 118, 385, 415, 670, 973
Bsp19I CCATGG 1 cut(s) 823
BspACI CCGC 4 cut(s) 560, 649, 931, 1393
BspANI GGCC 6 cut(s) 828, 1035, 1124, 1136, 1289, 1404
BspCNI CTCAG 2 cut(s) 625, 1111
BspLI GGNNCC 6 cut(s) 339, 755, 1136, 1288, 1353, 1432
BspMAI CTGCAG 1 cut(s) 1454
BspOI GCTAGC 1 cut(s) 1155
BspPI GGATC 2 cut(s) 113, 981
BsrDI GCAATG 2 cut(s) 622, 1264
BsrI ACTGG 6 cut(s) 342, 757, 1036, 1043, 1299, 1355
BssECI CCNNGG 5 cut(s) 333, 677, 823, 840, 1146
BssMI GATC 5 cut(s) 118, 385, 415, 670, 973
BssSI CACGAG 1 cut(s) 1062
BssT1I CCWWGG 3 cut(s) 677, 823, 840
Bst2BI CACGAG 1 cut(s) 1062
Bst2UI CCWGG 5 cut(s) 335, 872, 1147, 1438, 1470
Bst4CI ACNGT 4 cut(s) 884, 889, 1421, 1543
Bst6I CTCTTC 5 cut(s) 83, 89, 169, 841, 1216
BstBAI YACGTR 1 cut(s) 529
BstC8I GCNNGC 1 cut(s) 1153
BstDEI CTNAG 2 cut(s) 633, 1119
BstDSI CCRYGG 1 cut(s) 823
BstF5I GGATG 2 cut(s) 1333, 1405
BstKTI GATC 5 cut(s) 121, 388, 418, 673, 976
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 5 cut(s) 118, 385, 415, 670, 973
BstMWI GCNNNNNNNGC 6 cut(s) 56, 209, 284, 559, 1121, 1401
BstNI CCWGG 5 cut(s) 335, 872, 1147, 1438, 1470
BstSCI CCNGG 7 cut(s) 16, 333, 571, 870, 1145, 1436, 1468
BstSFI CTRYAG 3 cut(s) 282, 1126, 1450
BstSLI GKGCMC 1 cut(s) 1138
BstV1I GCAGC 4 cut(s) 190, 193, 196, 1464
BstV2I GAAGAC 5 cut(s) 91, 225, 444, 1148, 1186
BstX2I RGATCY 1 cut(s) 385
BstXI CCANNNNNNTGG 2 cut(s) 473, 617
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 6 cut(s) 828, 1035, 1124, 1136, 1289, 1404
BtgI CCRYGG 1 cut(s) 823
BtgZI GCGATG 2 cut(s) 40, 378
BtsCI GGATG 2 cut(s) 1333, 1405
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 1036, 1362
Cac8I GCNNGC 1 cut(s) 1153
Cfr13I GGNCC 4 cut(s) 820, 1134, 1135, 1287
Csp6I GTAC 4 cut(s) 526, 885, 1207, 1539
CviAII CATG 6 cut(s) 579, 745, 824, 1049, 1254, 1485
CviQI GTAC 4 cut(s) 526, 885, 1207, 1539
DdeI CTNAG 2 cut(s) 633, 1119
DpnI GATC 5 cut(s) 120, 387, 417, 672, 975
DpnII GATC 5 cut(s) 118, 385, 415, 670, 973
DraIII CACNNNGTG 1 cut(s) 353
DrdI GACNNNNNNGTC 1 cut(s) 1019
DseDI GACNNNNNNGTC 1 cut(s) 1019
EaeI YGGCCR 3 cut(s) 826, 1033, 1402
Eam1104I CTCTTC 5 cut(s) 83, 89, 169, 841, 1216
EarI CTCTTC 5 cut(s) 83, 89, 169, 841, 1216
Eco130I CCWWGG 3 cut(s) 677, 823, 840
Eco147I AGGCCT 1 cut(s) 1124
Eco24I GRGCYC 2 cut(s) 115, 1138
Eco32I GATATC 1 cut(s) 837
Eco47I GGWCC 1 cut(s) 820
Eco57I CTGAAG 2 cut(s) 470, 1160
EcoO109I RGGNCCY 1 cut(s) 1135
EcoRI GAATTC 1 cut(s) 949
EcoRII CCWGG 5 cut(s) 333, 870, 1145, 1436, 1468
EcoRV GATATC 1 cut(s) 837
EcoT14I CCWWGG 3 cut(s) 677, 823, 840
EcoT22I ATGCAT 2 cut(s) 1117, 1486
EcoT38I GRGCYC 2 cut(s) 115, 1138
ErhI CCWWGG 3 cut(s) 677, 823, 840
FaeI CATG 6 cut(s) 582, 748, 827, 1052, 1257, 1488
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 2 cut(s) 247, 1460
FatI CATG 6 cut(s) 578, 744, 823, 1048, 1253, 1484
FauI CCCGC 1 cut(s) 567
Fnu4HI GCNGC 4 cut(s) 204, 207, 210, 1453
FokI GGATG 2 cut(s) 1340, 1392
FriOI GRGCYC 2 cut(s) 115, 1138
Fsp4HI GCNGC 4 cut(s) 204, 207, 210, 1453
FspBI CTAG 1 cut(s) 1152
GluI GCNGC 4 cut(s) 204, 207, 210, 1453
GsaI CCCAGC 1 cut(s) 1159
GsuI CTGGAG 1 cut(s) 1491
HaeIII GGCC 6 cut(s) 828, 1035, 1124, 1136, 1289, 1404
HapII CCGG 2 cut(s) 18, 572
Hin1II CATG 6 cut(s) 582, 748, 827, 1052, 1257, 1488
HincII GTYRAC 1 cut(s) 1383
HindII GTYRAC 1 cut(s) 1383
HindIII AAGCTT 1 cut(s) 597
HpaII CCGG 2 cut(s) 18, 572
HphI GGTGA 8 cut(s) 64, 79, 94, 488, 518, 553, 715, 1274
Hpy166II GTNNAC 3 cut(s) 347, 1044, 1383
Hpy188I TCNGA 5 cut(s) 634, 753, 785, 1120, 1226
Hpy188III TCNNGA 3 cut(s) 348, 389, 419
Hpy8I GTNNAC 3 cut(s) 347, 1044, 1383
HpyCH4III ACNGT 4 cut(s) 884, 889, 1421, 1543
HpyCH4IV ACGT 2 cut(s) 528, 997
HpyCH4V TGCA 9 cut(s) 278, 323, 376, 406, 689, 1115, 1257, 1452, 1484
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 209, 284, 559, 1121, 1401
HpyF3I CTNAG 2 cut(s) 633, 1119
HpySE526I ACGT 2 cut(s) 528, 997
Hsp92II CATG 6 cut(s) 582, 748, 827, 1052, 1257, 1488
Kzo9I GATC 5 cut(s) 118, 385, 415, 670, 973
LmnI GCTCC 1 cut(s) 312
Lsp1109I GCAGC 4 cut(s) 190, 193, 196, 1464
LweI GCATC 4 cut(s) 717, 1102, 1124, 1471
MaeI CTAG 1 cut(s) 1152
MaeII ACGT 2 cut(s) 528, 997
MaeIII GTNAC 2 cut(s) 44, 1372
MalI GATC 5 cut(s) 120, 387, 417, 672, 975
MboI GATC 5 cut(s) 118, 385, 415, 670, 973
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 2 cut(s) 115, 1138
MlsI TGGCCA 3 cut(s) 828, 1035, 1404
MluCI AATT 9 cut(s) 22, 244, 510, 866, 893, 949, 978, 1106, 1387
MluNI TGGCCA 3 cut(s) 828, 1035, 1404
MlyI GAGTC 6 cut(s) 464, 623, 773, 936, 1039, 1482
MmeI TCCRAC 2 cut(s) 980, 983
Mox20I TGGCCA 3 cut(s) 828, 1035, 1404
Mph1103I ATGCAT 2 cut(s) 1117, 1486
MscI TGGCCA 3 cut(s) 828, 1035, 1404
MseI TTAA 4 cut(s) 684, 936, 1026, 1167
MslI CAYNNNNRTG 1 cut(s) 1461
Msp20I TGGCCA 3 cut(s) 828, 1035, 1404
MspI CCGG 2 cut(s) 18, 572
MspR9I CCNGG 7 cut(s) 18, 335, 573, 872, 1147, 1438, 1470
MvaI CCWGG 5 cut(s) 335, 872, 1147, 1438, 1470
MwoI GCNNNNNNNGC 6 cut(s) 56, 209, 284, 559, 1121, 1401
NciI CCSGG 2 cut(s) 18, 573
NcoI CCATGG 1 cut(s) 823
NdeII GATC 5 cut(s) 118, 385, 415, 670, 973
NheI GCTAGC 1 cut(s) 1151
NlaIII CATG 6 cut(s) 582, 748, 827, 1052, 1257, 1488
NlaIV GGNNCC 6 cut(s) 339, 755, 1136, 1288, 1353, 1432
NmuCI GTSAC 1 cut(s) 1372
NsiI ATGCAT 2 cut(s) 1117, 1486
PceI AGGCCT 1 cut(s) 1124
PfeI GAWTC 4 cut(s) 740, 748, 1174, 1241
PfoI TCCNGGA 2 cut(s) 870, 1468
PkrI GCNGC 4 cut(s) 205, 208, 211, 1454
PleI GAGTC 6 cut(s) 463, 623, 772, 935, 1039, 1481
PpsI GAGTC 6 cut(s) 463, 623, 772, 935, 1039, 1481
Ppu21I YACGTR 1 cut(s) 529
Psp1406I AACGTT 1 cut(s) 997
Psp6I CCWGG 5 cut(s) 333, 870, 1145, 1436, 1468
PspFI CCCAGC 1 cut(s) 1155
PspGI CCWGG 5 cut(s) 333, 870, 1145, 1436, 1468
PspN4I GGNNCC 6 cut(s) 339, 755, 1136, 1288, 1353, 1432
PspOMI GGGCCC 1 cut(s) 1134
PspPI GGNCC 4 cut(s) 820, 1134, 1135, 1287
PsrI GAACNNNNNNTAC 2 cut(s) 1414, 1446
PstI CTGCAG 1 cut(s) 1454
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 4 cut(s) 527, 886, 1208, 1540
RsaNI GTAC 4 cut(s) 526, 885, 1207, 1539
RseI CAYNNNNRTG 1 cut(s) 1461
SaqAI TTAA 4 cut(s) 684, 936, 1026, 1167
SatI GCNGC 4 cut(s) 204, 207, 210, 1453
Sau3AI GATC 5 cut(s) 118, 385, 415, 670, 973
Sau96I GGNCC 4 cut(s) 820, 1134, 1135, 1287
SchI GAGTC 6 cut(s) 464, 623, 773, 936, 1039, 1482
ScrFI CCNGG 7 cut(s) 18, 335, 573, 872, 1147, 1438, 1470
SduI GDGCHC 2 cut(s) 115, 1138
SfaNI GCATC 4 cut(s) 717, 1102, 1124, 1471
SfcI CTRYAG 3 cut(s) 282, 1126, 1450
SinI GGWCC 1 cut(s) 820
SmiMI CAYNNNNRTG 1 cut(s) 1461
SmlI CTYRAG 1 cut(s) 942
SmoI CTYRAG 1 cut(s) 942
Sse9I AATT 9 cut(s) 22, 244, 510, 866, 893, 949, 978, 1106, 1387
SseBI AGGCCT 1 cut(s) 1124
SsiI CCGC 4 cut(s) 560, 649, 931, 1393
SspI AATATT 1 cut(s) 771
SspMI CTAG 1 cut(s) 1152
StuI AGGCCT 1 cut(s) 1124
StyD4I CCNGG 7 cut(s) 16, 333, 571, 870, 1145, 1436, 1468
StyI CCWWGG 3 cut(s) 677, 823, 840
TaaI ACNGT 4 cut(s) 884, 889, 1421, 1543
TaiI ACGT 2 cut(s) 531, 1000
TasI AATT 9 cut(s) 22, 244, 510, 866, 893, 949, 978, 1106, 1387
TatI WGTACW 1 cut(s) 1538
TfiI GAWTC 4 cut(s) 740, 748, 1174, 1241
Tru1I TTAA 4 cut(s) 684, 936, 1026, 1167
Tru9I TTAA 4 cut(s) 684, 936, 1026, 1167
TscAI CASTG 3 cut(s) 12, 1043, 1362
TseFI GTSAC 1 cut(s) 1372
TseI GCWGC 4 cut(s) 203, 206, 209, 1452
Tsp45I GTSAC 1 cut(s) 1372
TspGWI ACGGA 1 cut(s) 504
TspRI CASTG 3 cut(s) 12, 1043, 1362
VpaK11BI GGWCC 1 cut(s) 820
XapI RAATTY 5 cut(s) 510, 866, 893, 949, 1106
XspI CTAG 1 cut(s) 1152
Zsp2I ATGCAT 2 cut(s) 1117, 1486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.