RH4DG078300

Protein trichome birefringence-like 5

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG078300.1

Sequence Viewer

Length: 1500 bp
ATGGCAGTGGCAACACCCAGTAATTCTTCCCCCCAAAAGAGCCGTTACGCCTTCATCGCTATCCTATTCATCACCCTCTTCCTCTTCACCATTTTCGTCTTCACCAAACGAGCCCTTGAGCCCTCTCTCTTTCTCTACAAGGACTACTTTACCCAAATCCCCTCTTCTTCCCCTTCTCCTTCTTCAACTAACAATTCCCAAATCTCTTTGTCCCAATCCACCTCTGCACCTACAGTAGACCCACCTTCTTCCTTGCTCCAATCCACCTCTGCACAACCAACCCAGGGACCCAGTTCACGAAGTGAGTTCAGCGATGAAAATGTGCAAGACCCAGATCTTGAAAATCAAAATGTGCAAAACCCAGATCGTGAAAATGAAAATGTGGAAGACCCAGACCTGAAGGACTCCAATGACCAAAATGGTGGTGAAAATGAGAACCCAGATGGTGAAATGGGTGAAATACCGTGTGATTTGTACGTGGGAAGTTGGGTGAGAGATGAGCAATACCCGCTTTACAAACCGGGTTCATGCCCTTATGTTGATGAAGCTTTTGATTGCCAGAGCAATGGGAGGAGAGACTCTGAGTATCTCAAATGGCGGTGGAAACCTGACGGCTGTGATCTTCCAAGGTTTAATGCAACAGACTTTTTGGTGAGGCTACGGGGTAAAAGGTTGATGCTCATAGGAGATTCCATGAACCGGAACCAGTTTGAGTCAATATTATGCCTCCTCCGAGAAGGCTTGCATAATAAGAGCAGAATGTATGAGGTCTATGGCCACAAAATATCCAAAGAAAGAAGCTATTTTGTTTTCAAATTCCAGGACTATGACTGTACGGTGGAGTTTGTGTTGTCACATTTCCTTGTGAAAGAAGGAGTCCGCTTTGATGAGCAAGGGAAGTCAAATCCAACTTTATCAATGGATCAAATTGACAAGAATGCTAAACGTTGGAAGAAGGCTGACATTCTTGTCTTTAATACTGGCCACTGGTGGGCTCATGGAAAGACTGCTCGTGGGAAAAACTACTACAAAGAAGGAGATTATCTCTATCCACAATTTGATGTATCTGAGGCCTTTAGACGGGCCCTGAAGACCTGGGCTAGCTGGGTTGAGCTTAATGTGAATCCAAAAAAGCAGTTGATCTTCTATCGTGGGTACTCTTCTTCACATTTCAGAGGTGGAGATTGGGATTCAGGTGGGTCATGCAATGGGGAAAAAGAACCAGCCTTCTCTGGGGCCATACTGGATAGCTACCCTTTAAAAATGAAGATAGTGGATGAAGTAATCAAAGAAATGAAGGTTCCAGTGAAACTATTGAATGTGACAAGGTTAACCAATTTCCGCAAGGATGGCCATCCATCAATCTACGGTCAGAAAGTTTCCACCAGGAAGGAAGACTGTAGCCATTGGTGTGTTCCTGGAGTCCCTGATGCATGGAATGAGCTCATCTATTCCACTATGGTTTTTCAGCAGACCAAATCAAAGAGTTCAGTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

499

Amino Acids

57.08

Weight (kDa)

6.14

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 156 - 207 1.3e-22 PMR5 N terminal Domain
PC-Esterase PF13839 208 - 485 4.7e-97 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 968
AccI GTMKAC 1 cut(s) 237
AciI CCGC 4 cut(s) 509, 598, 880, 1342
AclI AACGTT 1 cut(s) 946
AclWI GGATC 1 cut(s) 930
AcoI YGGCCR 3 cut(s) 775, 982, 1351
AcsI RAATTY 1 cut(s) 815
AcuI CTGAAG 2 cut(s) 419, 1109
AdeI CACNNNGTG 1 cut(s) 302
AfaI GTAC 3 cut(s) 476, 835, 1157
AfiI CCNNNNNNNGG 5 cut(s) 284, 699, 991, 1080, 1233
AgsI TTSAA 4 cut(s) 186, 341, 814, 1318
AjnI CCWGG 5 cut(s) 282, 819, 1094, 1385, 1417
AluBI AGCT 6 cut(s) 548, 801, 1104, 1114, 1251, 1444
AluI AGCT 6 cut(s) 548, 801, 1104, 1114, 1251, 1444
Alw21I GWGCWC 1 cut(s) 1446
Alw26I GTCTC 1 cut(s) 570
AlwI GGATC 1 cut(s) 930
AoxI GGCC 6 cut(s) 775, 982, 1071, 1083, 1236, 1351
ApaI GGGCCC 1 cut(s) 1087
ApoI RAATTY 1 cut(s) 815
AspS9I GGNCC 4 cut(s) 287, 1083, 1084, 1236
AsuC2I CCSGG 1 cut(s) 522
AsuHPI GGTGA 8 cut(s) 64, 79, 94, 437, 458, 467, 502, 664
AsuNHI GCTAGC 1 cut(s) 1100
AvaII GGWCC 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 1087
BalI TGGCCA 3 cut(s) 777, 984, 1353
BanII GRGCYC 5 cut(s) 115, 123, 997, 1087, 1446
BauI CACGAG 1 cut(s) 1011
BbsI GAAGAC 4 cut(s) 91, 393, 1097, 1401
Bbv12I GWGCWC 1 cut(s) 1446
BccI CCATC 4 cut(s) 437, 1343, 1362, 1366
BceAI ACGGC 2 cut(s) 27, 628
BciT130I CCWGG 5 cut(s) 284, 821, 1096, 1387, 1419
BcnI CCSGG 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 570
BfaI CTAG 1 cut(s) 1101
BfmI CTRYAG 2 cut(s) 231, 1399
BglII AGATCT 1 cut(s) 334
Bme1390I CCNGG 6 cut(s) 284, 522, 821, 1096, 1387, 1419
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 4 cut(s) 287, 1083, 1084, 1236
BmiI GGNNCC 6 cut(s) 288, 289, 704, 1085, 1237, 1302
BmrFI CCNGG 6 cut(s) 284, 522, 821, 1096, 1387, 1419
BmrI ACTGGG 2 cut(s) 12, 285
BmsI GCATC 2 cut(s) 666, 1420
BmtI GCTAGC 1 cut(s) 1104
BmuI ACTGGG 2 cut(s) 12, 285
BpiI GAAGAC 4 cut(s) 91, 393, 1097, 1401
BplI GAGNNNNNCTC 2 cut(s) 1029, 1061
BpmI CTGGAG 1 cut(s) 1440
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 522
BsaAI YACGTR 1 cut(s) 478
BsaBI GATNNNNATC 1 cut(s) 1353
BsaJI CCNNGG 4 cut(s) 282, 283, 626, 1095
BsaWI WCCGGW 1 cut(s) 699
BsaXI ACNNNNNCTCC 2 cut(s) 833, 863
Bsc4I CCNNNNNNNGG 5 cut(s) 284, 699, 991, 1080, 1233
Bse1I ACTGG 7 cut(s) 18, 291, 706, 985, 992, 1248, 1304
Bse3DI GCAATG 2 cut(s) 571, 1213
Bse8I GATNNNNATC 1 cut(s) 1353
BseBI CCWGG 5 cut(s) 284, 821, 1096, 1387, 1419
BseDI CCNNGG 4 cut(s) 282, 283, 626, 1095
BseGI GGATG 3 cut(s) 1282, 1354, 1354
BseJI GATNNNNATC 1 cut(s) 1353
BseLI CCNNNNNNNGG 5 cut(s) 284, 699, 991, 1080, 1233
BseMI GCAATG 2 cut(s) 571, 1213
BseMII CTCAG 2 cut(s) 573, 1059
BseNI ACTGG 7 cut(s) 18, 291, 706, 985, 992, 1248, 1304
BseRI GAGGAG 2 cut(s) 586, 719
BseSI GKGCMC 1 cut(s) 1087
BseYI CCCAGC 1 cut(s) 1104
BsgI GTGCAG 2 cut(s) 210, 255
BshFI GGCC 6 cut(s) 777, 984, 1073, 1085, 1238, 1353
BsiHKAI GWGCWC 1 cut(s) 1446
BsiSI CCGG 2 cut(s) 521, 700
BslFI GGGAC 3 cut(s) 196, 300, 1409
BslI CCNNNNNNNGG 5 cut(s) 284, 699, 991, 1080, 1233
BsmAI GTCTC 1 cut(s) 570
BsmFI GGGAC 3 cut(s) 196, 300, 1409
BsmI GAATGC 1 cut(s) 943
BsnI GGCC 6 cut(s) 777, 984, 1073, 1085, 1238, 1353
Bsp120I GGGCCC 1 cut(s) 1083
Bsp1286I GDGCHC 5 cut(s) 115, 123, 997, 1087, 1446
Bsp143I GATC 5 cut(s) 334, 364, 619, 922, 1140
BspACI CCGC 4 cut(s) 509, 598, 880, 1342
BspANI GGCC 6 cut(s) 777, 984, 1073, 1085, 1238, 1353
BspCNI CTCAG 2 cut(s) 574, 1060
BspLI GGNNCC 6 cut(s) 288, 289, 704, 1085, 1237, 1302
BspOI GCTAGC 1 cut(s) 1104
BspPI GGATC 1 cut(s) 930
BsrDI GCAATG 2 cut(s) 571, 1213
BsrI ACTGG 7 cut(s) 18, 291, 706, 985, 992, 1248, 1304
BssECI CCNNGG 4 cut(s) 282, 283, 626, 1095
BssMI GATC 5 cut(s) 334, 364, 619, 922, 1140
BssSI CACGAG 1 cut(s) 1011
BssT1I CCWWGG 1 cut(s) 626
Bst2BI CACGAG 1 cut(s) 1011
Bst2UI CCWGG 5 cut(s) 284, 821, 1096, 1387, 1419
Bst4CI ACNGT 6 cut(s) 235, 465, 833, 838, 1370, 1400
Bst6I CTCTTC 4 cut(s) 83, 89, 169, 1165
BstBAI YACGTR 1 cut(s) 478
BstC8I GCNNGC 2 cut(s) 743, 1102
BstDEI CTNAG 2 cut(s) 582, 1068
BstF5I GGATG 3 cut(s) 1282, 1354, 1354
BstKTI GATC 5 cut(s) 337, 367, 622, 925, 1143
BstMAI GTCTC 1 cut(s) 570
BstMBI GATC 5 cut(s) 334, 364, 619, 922, 1140
BstMWI GCNNNNNNNGC 3 cut(s) 56, 508, 1350
BstNI CCWGG 5 cut(s) 284, 821, 1096, 1387, 1419
BstSCI CCNGG 6 cut(s) 282, 520, 819, 1094, 1385, 1417
BstSFI CTRYAG 2 cut(s) 231, 1399
BstSLI GKGCMC 1 cut(s) 1087
BstV2I GAAGAC 4 cut(s) 91, 393, 1097, 1401
BstX2I RGATCY 1 cut(s) 334
BstXI CCANNNNNNTGG 2 cut(s) 422, 566
BstYI RGATCY 1 cut(s) 334
BsuRI GGCC 6 cut(s) 777, 984, 1073, 1085, 1238, 1353
BtgZI GCGATG 2 cut(s) 40, 327
BtsCI GGATG 3 cut(s) 1282, 1354, 1354
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 985, 1311
Cac8I GCNNGC 2 cut(s) 743, 1102
Cfr13I GGNCC 4 cut(s) 287, 1083, 1084, 1236
Csp6I GTAC 3 cut(s) 475, 834, 1156
CviAII CATG 5 cut(s) 528, 694, 998, 1203, 1434
CviQI GTAC 3 cut(s) 475, 834, 1156
DdeI CTNAG 2 cut(s) 582, 1068
DpnI GATC 5 cut(s) 336, 366, 621, 924, 1142
DpnII GATC 5 cut(s) 334, 364, 619, 922, 1140
DraI TTTAAA 1 cut(s) 1260
DraIII CACNNNGTG 1 cut(s) 302
DrdI GACNNNNNNGTC 1 cut(s) 968
DseDI GACNNNNNNGTC 1 cut(s) 968
EaeI YGGCCR 3 cut(s) 775, 982, 1351
Eam1104I CTCTTC 4 cut(s) 83, 89, 169, 1165
EarI CTCTTC 4 cut(s) 83, 89, 169, 1165
Ecl136II GAGCTC 1 cut(s) 1444
Eco130I CCWWGG 1 cut(s) 626
Eco147I AGGCCT 1 cut(s) 1073
Eco24I GRGCYC 5 cut(s) 115, 123, 997, 1087, 1446
Eco47I GGWCC 1 cut(s) 287
Eco53kI GAGCTC 1 cut(s) 1444
Eco57I CTGAAG 2 cut(s) 419, 1109
EcoICRI GAGCTC 1 cut(s) 1444
EcoO109I RGGNCCY 2 cut(s) 287, 1084
EcoRII CCWGG 5 cut(s) 282, 819, 1094, 1385, 1417
EcoT14I CCWWGG 1 cut(s) 626
EcoT22I ATGCAT 1 cut(s) 1435
EcoT38I GRGCYC 5 cut(s) 115, 123, 997, 1087, 1446
ErhI CCWWGG 1 cut(s) 626
FaeI CATG 5 cut(s) 531, 697, 1001, 1206, 1437
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 3 cut(s) 196, 300, 1409
FatI CATG 5 cut(s) 527, 693, 997, 1202, 1433
FauI CCCGC 1 cut(s) 516
FblI GTMKAC 1 cut(s) 237
FokI GGATG 3 cut(s) 1289, 1341, 1361
FriOI GRGCYC 5 cut(s) 115, 123, 997, 1087, 1446
FspBI CTAG 1 cut(s) 1101
GsaI CCCAGC 1 cut(s) 1108
GsuI CTGGAG 1 cut(s) 1440
HaeIII GGCC 6 cut(s) 777, 984, 1073, 1085, 1238, 1353
HapII CCGG 2 cut(s) 521, 700
Hin1II CATG 5 cut(s) 531, 697, 1001, 1206, 1437
HincII GTYRAC 1 cut(s) 1332
HindII GTYRAC 1 cut(s) 1332
HindIII AAGCTT 1 cut(s) 546
HinfI GANTC 8 cut(s) 404, 578, 689, 713, 876, 1123, 1190, 1422
HpaI GTTAAC 1 cut(s) 1332
HpaII CCGG 2 cut(s) 521, 700
HphI GGTGA 8 cut(s) 64, 79, 94, 437, 458, 467, 502, 664
Hpy166II GTNNAC 3 cut(s) 238, 296, 1332
Hpy188I TCNGA 5 cut(s) 583, 734, 1069, 1175, 1374
Hpy188III TCNNGA 3 cut(s) 297, 338, 368
Hpy8I GTNNAC 3 cut(s) 238, 296, 1332
HpyCH4III ACNGT 6 cut(s) 235, 465, 833, 838, 1370, 1400
HpyCH4IV ACGT 2 cut(s) 477, 946
HpyCH4V TGCA 8 cut(s) 227, 272, 325, 355, 638, 745, 1206, 1433
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 508, 1350
HpyF3I CTNAG 2 cut(s) 582, 1068
HpySE526I ACGT 2 cut(s) 477, 946
Hsp92II CATG 5 cut(s) 531, 697, 1001, 1206, 1437
KflI GGGWCCC 1 cut(s) 287
KspAI GTTAAC 1 cut(s) 1332
Kzo9I GATC 5 cut(s) 334, 364, 619, 922, 1140
LmnI GCTCC 1 cut(s) 261
LweI GCATC 2 cut(s) 666, 1420
MaeI CTAG 1 cut(s) 1101
MaeII ACGT 2 cut(s) 477, 946
MaeIII GTNAC 3 cut(s) 44, 852, 1321
MalI GATC 5 cut(s) 336, 366, 621, 924, 1142
MboI GATC 5 cut(s) 334, 364, 619, 922, 1140
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 5 cut(s) 115, 123, 997, 1087, 1446
MlsI TGGCCA 3 cut(s) 777, 984, 1353
MluCI AATT 6 cut(s) 22, 193, 815, 927, 1055, 1336
MluNI TGGCCA 3 cut(s) 777, 984, 1353
MlyI GAGTC 5 cut(s) 398, 572, 722, 885, 1431
MmeI TCCRAC 2 cut(s) 929, 932
Mox20I TGGCCA 3 cut(s) 777, 984, 1353
Mph1103I ATGCAT 1 cut(s) 1435
MscI TGGCCA 3 cut(s) 777, 984, 1353
MseI TTAA 5 cut(s) 633, 975, 1116, 1259, 1331
MslI CAYNNNNRTG 1 cut(s) 1410
Msp20I TGGCCA 3 cut(s) 777, 984, 1353
MspI CCGG 2 cut(s) 521, 700
MspR9I CCNGG 6 cut(s) 284, 522, 821, 1096, 1387, 1419
Mva1269I GAATGC 1 cut(s) 943
MvaI CCWGG 5 cut(s) 284, 821, 1096, 1387, 1419
MwoI GCNNNNNNNGC 3 cut(s) 56, 508, 1350
NciI CCSGG 1 cut(s) 522
NdeII GATC 5 cut(s) 334, 364, 619, 922, 1140
NheI GCTAGC 1 cut(s) 1100
NlaIII CATG 5 cut(s) 531, 697, 1001, 1206, 1437
NlaIV GGNNCC 6 cut(s) 288, 289, 704, 1085, 1237, 1302
NmuCI GTSAC 2 cut(s) 852, 1321
NsiI ATGCAT 1 cut(s) 1435
PasI CCCWGGG 1 cut(s) 283
PceI AGGCCT 1 cut(s) 1073
PctI GAATGC 1 cut(s) 943
PfeI GAWTC 3 cut(s) 689, 1123, 1190
PfoI TCCNGGA 2 cut(s) 819, 1417
PleI GAGTC 5 cut(s) 398, 572, 721, 884, 1430
PpsI GAGTC 5 cut(s) 398, 572, 721, 884, 1430
Ppu21I YACGTR 1 cut(s) 478
PpuMI RGGWCCY 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 1446
Psp1406I AACGTT 1 cut(s) 946
Psp5II RGGWCCY 1 cut(s) 287
Psp6I CCWGG 5 cut(s) 282, 819, 1094, 1385, 1417
PspFI CCCAGC 1 cut(s) 1104
PspGI CCWGG 5 cut(s) 282, 819, 1094, 1385, 1417
PspN4I GGNNCC 6 cut(s) 288, 289, 704, 1085, 1237, 1302
PspOMI GGGCCC 1 cut(s) 1083
PspPI GGNCC 4 cut(s) 287, 1083, 1084, 1236
PspPPI RGGWCCY 1 cut(s) 287
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 3 cut(s) 476, 835, 1157
RsaNI GTAC 3 cut(s) 475, 834, 1156
RseI CAYNNNNRTG 1 cut(s) 1410
SacI GAGCTC 1 cut(s) 1446
SaqAI TTAA 5 cut(s) 633, 975, 1116, 1259, 1331
Sau3AI GATC 5 cut(s) 334, 364, 619, 922, 1140
Sau96I GGNCC 4 cut(s) 287, 1083, 1084, 1236
SchI GAGTC 5 cut(s) 398, 572, 722, 885, 1431
ScrFI CCNGG 6 cut(s) 284, 522, 821, 1096, 1387, 1419
SduI GDGCHC 5 cut(s) 115, 123, 997, 1087, 1446
SfaNI GCATC 2 cut(s) 666, 1420
SfcI CTRYAG 2 cut(s) 231, 1399
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 1410
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 6 cut(s) 22, 193, 815, 927, 1055, 1336
SseBI AGGCCT 1 cut(s) 1073
SsiI CCGC 4 cut(s) 509, 598, 880, 1342
SspI AATATT 1 cut(s) 720
SspMI CTAG 1 cut(s) 1101
SstI GAGCTC 1 cut(s) 1446
StuI AGGCCT 1 cut(s) 1073
StyD4I CCNGG 6 cut(s) 282, 520, 819, 1094, 1385, 1417
StyI CCWWGG 1 cut(s) 626
TaaI ACNGT 6 cut(s) 235, 465, 833, 838, 1370, 1400
TaiI ACGT 2 cut(s) 480, 949
TasI AATT 6 cut(s) 22, 193, 815, 927, 1055, 1336
TfiI GAWTC 3 cut(s) 689, 1123, 1190
Tru1I TTAA 5 cut(s) 633, 975, 1116, 1259, 1331
Tru9I TTAA 5 cut(s) 633, 975, 1116, 1259, 1331
TscAI CASTG 3 cut(s) 12, 992, 1311
TseFI GTSAC 2 cut(s) 852, 1321
Tsp45I GTSAC 2 cut(s) 852, 1321
TspRI CASTG 3 cut(s) 12, 992, 1311
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 1 cut(s) 815
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 1 cut(s) 1101
Zsp2I ATGCAT 1 cut(s) 1435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.