Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008805

Physical Location & Seq

Genomic Coordinates Forward (+)

51466598 .. 51470504

Gene Structure 3907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009358

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCAGTGGCAACACCCAGTAATTCCTCCCCCCAAAAGAGCCGTTACGCCTTCATCGCTATCCTTCTCATCACCATCTTCCTCTTCACCATTTTCGTCTTCACCAAACGAGCTCTTGAGCAATCTCTCTTTCTCTACAAGGACCACTTTGCCCAAATCCCCTTTTCTTCTTCTCCTTCTTCAACTAACAATTCCCACATCTCTGAGAGCTCTGACCTGAAGGACTCCAATGACCAAAATGGTGGTGAAAATGAGAACCCAGATGGTGAAATGGGTGAAATTCCGTGTGATTTGTACGTGGGAAGTTGGGCGAGAGATGAGCAATACCCGCTTTACAAACCGGGTTCATGCCCTTATGTTGATGAAGCTTTTGATTGCCAGAGCAATGGGAGGAGCGACTCTGAGTATCTCAAATGGCGGTGGAAACCTGACGGCTGTGATCTTCCAAGGTTTAATGCAACAGACTTTTTGGTGAGGCTACGGGGTAAAAGGTTGATGCTCATAGGAGATTCCATGAACCGGAACCAGTTTGAGTCAATATTATGCCTCCTCCGAGAAGGCTTGCATAATAAGAGCAGAATGTATGAGGTCCATGGCCACAAAATATCCAAAGAAAGAAGCTATTTTGTTTTCAAATTCCAGGACTATGACTGTACGGTGGAGTTTGTGTTGTCACATTTCCTTGTGAAAGAAGGAGTCCACTTTGATGAGCAAGGGAAGTCAAATCCAACTCTATCAATGGATCAAATTGACAAGAATGCTAAACGTTGGAAGAAGGCTGACATTCTTGTCTTTAATACTGGCCACTGGTGGGCTCATGGAAAGACTGCTCGTGGGAAAAACTACTACAAAGAAGGAGATTATCTCTATCCACAATTTGATGTATCTGAGGCCTTTAGACGGGCCCTGAAGACCTGGGCTAGCTGGGTTGAGCTTAATGTGAATCCAAAAAAGCAGGTGATCTTCTATCGTGGGTACTCTTCTTCACATTTCAGAGGTGGAGATTGGGATTCAGGTGGGTCATGCAATGGGGAAAAAGAACCAGCCTTCTCTGGGGCCATACTGGATAGCTACCCTTTAAAAATGAAGATAGTGGATGAAGTGATCAAAGAAATGAAGGTTCCAGTGAAAGTATTGAATGTGACAAGGTTAACCAATTTCCGCAAGGATGGCCATCCATCAATCTACGGTCAGAAAGTTTCCACCAGGAAGGAAGACTGTAGCCATTGGTGTGTTCCTGGAGTCCCTGATGCATGGAATGAGCTCATCTATGCCACTATGGTTTTTCAGCAGACCAAATCAAAGAGTACAGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

440

Amino Acids

50.43

Weight (kDa)

8.21

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	96 - 147	1.4e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	148 - 425	1.9e-97	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20590 AT5G20590
fragaria_vesca	FvH4_4g06600
malus_domestica	MD16G1241800.v1.1
prunus_persica	Prupe.1G068600_v2.0.a1 Prupe.1G068600_v2.0.a1
pyrus_communis	pycom16g20260
rosa_chinensis	RchiOBHm_Chr4g0398501 RchiOBHm_Chr4g0398521
rosa_laevigata	RLG00000009351 RLG00000009358
rosa_multiflora	Rmu_sc0007985.1_g000006 Rmu_ssc0000240.1_g000023
rosa_roxburghii	Rroxscaffold_5G00343470 Rroxscaffold_5G00343480
rosa_rugosa	Rorug04G0008800
rosa_samantha	Rh4AG086900 Rh4BG083500 Rh4CG094900 Rh4CG095000 Rh4DG078300
rosa_wichuraiana	Rw4G007240 Rw4G007250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	946
AasI	GACNNNNNNGTC	1 cut(s)	788
Acc36I	ACCTGC	1 cut(s)	946
AciI	CCGC	3 cut(s)	329, 418, 1162
AclI	AACGTT	1 cut(s)	766
AclWI	GGATC	1 cut(s)	750
AcoI	YGGCCR	3 cut(s)	595, 802, 1171
AcsI	RAATTY	2 cut(s)	279, 635
AcuI	CTGAAG	2 cut(s)	239, 929
AfaI	GTAC	4 cut(s)	296, 655, 977, 1309
AfiI	CCNNNNNNNGG	4 cut(s)	519, 811, 900, 1053
AgsI	TTSAA	3 cut(s)	183, 634, 1138
AjnI	CCWGG	4 cut(s)	639, 914, 1205, 1237
AluBI	AGCT	8 cut(s)	113, 210, 368, 621, 924, 934, 1071, 1264
AluI	AGCT	8 cut(s)	113, 210, 368, 621, 924, 934, 1071, 1264
Alw21I	GWGCWC	3 cut(s)	115, 212, 1266
AlwI	GGATC	1 cut(s)	750
AoxI	GGCC	6 cut(s)	595, 802, 891, 903, 1056, 1171
ApaI	GGGCCC	1 cut(s)	907
ApoI	RAATTY	2 cut(s)	279, 635
AspS9I	GGNCC	5 cut(s)	142, 589, 903, 904, 1056
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	8 cut(s)	64, 79, 94, 257, 278, 287, 484, 970
AsuNHI	GCTAGC	1 cut(s)	920
AvaII	GGWCC	2 cut(s)	142, 589
BaeGI	GKGCMC	1 cut(s)	907
BalI	TGGCCA	3 cut(s)	597, 804, 1173
BanII	GRGCYC	5 cut(s)	115, 212, 817, 907, 1266
BauI	CACGAG	1 cut(s)	831
BbsI	GAAGAC	3 cut(s)	91, 917, 1221
Bbv12I	GWGCWC	3 cut(s)	115, 212, 1266
BccI	CCATC	5 cut(s)	83, 257, 1163, 1182, 1186
BceAI	ACGGC	2 cut(s)	27, 448
BciT130I	CCWGG	4 cut(s)	641, 916, 1207, 1239
BclI	TGATCA	1 cut(s)	1104
BcnI	CCSGG	1 cut(s)	342
BfaI	CTAG	1 cut(s)	921
BfmI	CTRYAG	1 cut(s)	1219
BfuAI	ACCTGC	1 cut(s)	946
Bme1390I	CCNGG	5 cut(s)	342, 641, 916, 1207, 1239
Bme18I	GGWCC	2 cut(s)	142, 589
BmgT120I	GGNCC	5 cut(s)	142, 589, 903, 904, 1056
BmiI	GGNNCC	4 cut(s)	524, 905, 1057, 1122
BmrFI	CCNGG	5 cut(s)	342, 641, 916, 1207, 1239
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	2 cut(s)	486, 1240
BmtI	GCTAGC	1 cut(s)	924
BmuI	ACTGGG	1 cut(s)	12
BpiI	GAAGAC	3 cut(s)	91, 917, 1221
BplI	GAGNNNNNCTC	2 cut(s)	849, 881
BpmI	CTGGAG	1 cut(s)	1260
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	1173
BsaJI	CCNNGG	3 cut(s)	446, 592, 915
BsaWI	WCCGGW	1 cut(s)	519
BsaXI	ACNNNNNCTCC	2 cut(s)	653, 683
Bsc4I	CCNNNNNNNGG	4 cut(s)	519, 811, 900, 1053
Bse1I	ACTGG	6 cut(s)	18, 526, 805, 812, 1068, 1124
Bse3DI	GCAATG	2 cut(s)	391, 1033
Bse8I	GATNNNNATC	1 cut(s)	1173
BseBI	CCWGG	4 cut(s)	641, 916, 1207, 1239
BseDI	CCNNGG	3 cut(s)	446, 592, 915
BseGI	GGATG	3 cut(s)	1102, 1174, 1174
BseJI	GATNNNNATC	1 cut(s)	1173
BseLI	CCNNNNNNNGG	4 cut(s)	519, 811, 900, 1053
BseMI	GCAATG	2 cut(s)	391, 1033
BseMII	CTCAG	3 cut(s)	195, 393, 879
BseNI	ACTGG	6 cut(s)	18, 526, 805, 812, 1068, 1124
BseRI	GAGGAG	2 cut(s)	406, 539
BseSI	GKGCMC	1 cut(s)	907
BseYI	CCCAGC	1 cut(s)	924
BshFI	GGCC	6 cut(s)	597, 804, 893, 905, 1058, 1173
BsiHKAI	GWGCWC	3 cut(s)	115, 212, 1266
BsiSI	CCGG	2 cut(s)	341, 520
BslFI	GGGAC	1 cut(s)	1229
BslI	CCNNNNNNNGG	4 cut(s)	519, 811, 900, 1053
BsmFI	GGGAC	1 cut(s)	1229
BsmI	GAATGC	1 cut(s)	763
BsnI	GGCC	6 cut(s)	597, 804, 893, 905, 1058, 1173
Bsp120I	GGGCCC	1 cut(s)	903
Bsp1286I	GDGCHC	5 cut(s)	115, 212, 817, 907, 1266
Bsp143I	GATC	4 cut(s)	439, 742, 960, 1104
Bsp19I	CCATGG	1 cut(s)	592
BspACI	CCGC	3 cut(s)	329, 418, 1162
BspANI	GGCC	6 cut(s)	597, 804, 893, 905, 1058, 1173
BspCNI	CTCAG	3 cut(s)	196, 394, 880
BspLI	GGNNCC	4 cut(s)	524, 905, 1057, 1122
BspMI	ACCTGC	1 cut(s)	946
BspOI	GCTAGC	1 cut(s)	924
BspPI	GGATC	1 cut(s)	750
BsrDI	GCAATG	2 cut(s)	391, 1033
BsrI	ACTGG	6 cut(s)	18, 526, 805, 812, 1068, 1124
BssECI	CCNNGG	3 cut(s)	446, 592, 915
BssMI	GATC	4 cut(s)	439, 742, 960, 1104
BssSI	CACGAG	1 cut(s)	831
BssT1I	CCWWGG	2 cut(s)	446, 592
Bst2BI	CACGAG	1 cut(s)	831
Bst2UI	CCWGG	4 cut(s)	641, 916, 1207, 1239
Bst4CI	ACNGT	5 cut(s)	653, 658, 1190, 1220, 1312
Bst6I	CTCTTC	2 cut(s)	89, 985
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	563, 922
BstDEI	CTNAG	3 cut(s)	204, 402, 888
BstDSI	CCRYGG	1 cut(s)	592
BstF5I	GGATG	3 cut(s)	1102, 1174, 1174
BstKTI	GATC	4 cut(s)	442, 745, 963, 1107
BstMBI	GATC	4 cut(s)	439, 742, 960, 1104
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 328, 1170
BstNI	CCWGG	4 cut(s)	641, 916, 1207, 1239
BstSCI	CCNGG	5 cut(s)	340, 639, 914, 1205, 1237
BstSFI	CTRYAG	1 cut(s)	1219
BstSLI	GKGCMC	1 cut(s)	907
BstV2I	GAAGAC	3 cut(s)	91, 917, 1221
BstXI	CCANNNNNNTGG	2 cut(s)	242, 386
BsuRI	GGCC	6 cut(s)	597, 804, 893, 905, 1058, 1173
BtgI	CCRYGG	1 cut(s)	592
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	1102, 1174, 1174
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 805, 1131
BveI	ACCTGC	1 cut(s)	946
Cac8I	GCNNGC	2 cut(s)	563, 922
Cfr13I	GGNCC	5 cut(s)	142, 589, 903, 904, 1056
Csp6I	GTAC	4 cut(s)	295, 654, 976, 1308
CviAII	CATG	6 cut(s)	348, 514, 593, 818, 1023, 1254
CviQI	GTAC	4 cut(s)	295, 654, 976, 1308
DdeI	CTNAG	3 cut(s)	204, 402, 888
DpnI	GATC	4 cut(s)	441, 744, 962, 1106
DpnII	GATC	4 cut(s)	439, 742, 960, 1104
DraI	TTTAAA	1 cut(s)	1080
DrdI	GACNNNNNNGTC	1 cut(s)	788
DseDI	GACNNNNNNGTC	1 cut(s)	788
EaeI	YGGCCR	3 cut(s)	595, 802, 1171
Eam1104I	CTCTTC	2 cut(s)	89, 985
EarI	CTCTTC	2 cut(s)	89, 985
Ecl136II	GAGCTC	3 cut(s)	113, 210, 1264
Eco130I	CCWWGG	2 cut(s)	446, 592
Eco147I	AGGCCT	1 cut(s)	893
Eco24I	GRGCYC	5 cut(s)	115, 212, 817, 907, 1266
Eco47I	GGWCC	2 cut(s)	142, 589
Eco53kI	GAGCTC	3 cut(s)	113, 210, 1264
Eco57I	CTGAAG	2 cut(s)	239, 929
EcoICRI	GAGCTC	3 cut(s)	113, 210, 1264
EcoO109I	RGGNCCY	1 cut(s)	904
EcoRII	CCWGG	4 cut(s)	639, 914, 1205, 1237
EcoT14I	CCWWGG	2 cut(s)	446, 592
EcoT22I	ATGCAT	1 cut(s)	1255
EcoT38I	GRGCYC	5 cut(s)	115, 212, 817, 907, 1266
ErhI	CCWWGG	2 cut(s)	446, 592
FaeI	CATG	6 cut(s)	351, 517, 596, 821, 1026, 1257
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	1 cut(s)	1229
FatI	CATG	6 cut(s)	347, 513, 592, 817, 1022, 1253
FauI	CCCGC	1 cut(s)	336
FbaI	TGATCA	1 cut(s)	1104
FokI	GGATG	3 cut(s)	1109, 1161, 1181
FriOI	GRGCYC	5 cut(s)	115, 212, 817, 907, 1266
FspBI	CTAG	1 cut(s)	921
GsaI	CCCAGC	1 cut(s)	928
GsuI	CTGGAG	1 cut(s)	1260
HaeIII	GGCC	6 cut(s)	597, 804, 893, 905, 1058, 1173
HapII	CCGG	2 cut(s)	341, 520
Hin1II	CATG	6 cut(s)	351, 517, 596, 821, 1026, 1257
HincII	GTYRAC	1 cut(s)	1152
HindII	GTYRAC	1 cut(s)	1152
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	8 cut(s)	224, 398, 509, 533, 696, 943, 1010, 1242
HpaI	GTTAAC	1 cut(s)	1152
HpaII	CCGG	2 cut(s)	341, 520
HphI	GGTGA	8 cut(s)	64, 79, 94, 257, 278, 287, 484, 970
Hpy166II	GTNNAC	2 cut(s)	700, 1152
Hpy188I	TCNGA	7 cut(s)	205, 214, 403, 554, 889, 995, 1194
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	2 cut(s)	700, 1152
HpyCH4III	ACNGT	5 cut(s)	653, 658, 1190, 1220, 1312
HpyCH4IV	ACGT	2 cut(s)	297, 766
HpyCH4V	TGCA	4 cut(s)	458, 565, 1026, 1253
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 328, 1170
HpyF3I	CTNAG	3 cut(s)	204, 402, 888
HpySE526I	ACGT	2 cut(s)	297, 766
Hsp92II	CATG	6 cut(s)	351, 517, 596, 821, 1026, 1257
Ksp22I	TGATCA	1 cut(s)	1104
KspAI	GTTAAC	1 cut(s)	1152
Kzo9I	GATC	4 cut(s)	439, 742, 960, 1104
LmnI	GCTCC	1 cut(s)	393
LweI	GCATC	2 cut(s)	486, 1240
MaeI	CTAG	1 cut(s)	921
MaeII	ACGT	2 cut(s)	297, 766
MaeIII	GTNAC	3 cut(s)	44, 672, 1141
MalI	GATC	4 cut(s)	441, 744, 962, 1106
MboI	GATC	4 cut(s)	439, 742, 960, 1104
MhlI	GDGCHC	5 cut(s)	115, 212, 817, 907, 1266
MlsI	TGGCCA	3 cut(s)	597, 804, 1173
MluCI	AATT	7 cut(s)	22, 190, 279, 635, 747, 875, 1156
MluNI	TGGCCA	3 cut(s)	597, 804, 1173
MlyI	GAGTC	5 cut(s)	218, 392, 542, 705, 1251
MmeI	TCCRAC	2 cut(s)	749, 752
MnlI	CCTC	9 cut(s)	37, 92, 384, 468, 557, 560, 580, 883, 989
Mox20I	TGGCCA	3 cut(s)	597, 804, 1173
Mph1103I	ATGCAT	1 cut(s)	1255
MscI	TGGCCA	3 cut(s)	597, 804, 1173
MseI	TTAA	5 cut(s)	453, 795, 936, 1079, 1151
MslI	CAYNNNNRTG	2 cut(s)	705, 1230
Msp20I	TGGCCA	3 cut(s)	597, 804, 1173
MspI	CCGG	2 cut(s)	341, 520
MspR9I	CCNGG	5 cut(s)	342, 641, 916, 1207, 1239
Mva1269I	GAATGC	1 cut(s)	763
MvaI	CCWGG	4 cut(s)	641, 916, 1207, 1239
MwoI	GCNNNNNNNGC	3 cut(s)	56, 328, 1170
NciI	CCSGG	1 cut(s)	342
NcoI	CCATGG	1 cut(s)	592
NdeII	GATC	4 cut(s)	439, 742, 960, 1104
NheI	GCTAGC	1 cut(s)	920
NlaIII	CATG	6 cut(s)	351, 517, 596, 821, 1026, 1257
NlaIV	GGNNCC	4 cut(s)	524, 905, 1057, 1122
NmuCI	GTSAC	2 cut(s)	672, 1141
NsiI	ATGCAT	1 cut(s)	1255
PaqCI	CACCTGC	1 cut(s)	946
PceI	AGGCCT	1 cut(s)	893
PctI	GAATGC	1 cut(s)	763
PfeI	GAWTC	3 cut(s)	509, 943, 1010
PfoI	TCCNGGA	2 cut(s)	639, 1237
PleI	GAGTC	5 cut(s)	218, 392, 541, 704, 1250
PpsI	GAGTC	5 cut(s)	218, 392, 541, 704, 1250
Ppu21I	YACGTR	1 cut(s)	298
Psp124BI	GAGCTC	3 cut(s)	115, 212, 1266
Psp1406I	AACGTT	1 cut(s)	766
Psp6I	CCWGG	4 cut(s)	639, 914, 1205, 1237
PspFI	CCCAGC	1 cut(s)	924
PspGI	CCWGG	4 cut(s)	639, 914, 1205, 1237
PspN4I	GGNNCC	4 cut(s)	524, 905, 1057, 1122
PspOMI	GGGCCC	1 cut(s)	903
PspPI	GGNCC	5 cut(s)	142, 589, 903, 904, 1056
RsaI	GTAC	4 cut(s)	296, 655, 977, 1309
RsaNI	GTAC	4 cut(s)	295, 654, 976, 1308
RseI	CAYNNNNRTG	2 cut(s)	705, 1230
SacI	GAGCTC	3 cut(s)	115, 212, 1266
SaqAI	TTAA	5 cut(s)	453, 795, 936, 1079, 1151
Sau3AI	GATC	4 cut(s)	439, 742, 960, 1104
Sau96I	GGNCC	5 cut(s)	142, 589, 903, 904, 1056
SchI	GAGTC	5 cut(s)	218, 392, 542, 705, 1251
ScrFI	CCNGG	5 cut(s)	342, 641, 916, 1207, 1239
SduI	GDGCHC	5 cut(s)	115, 212, 817, 907, 1266
SfaNI	GCATC	2 cut(s)	486, 1240
SfcI	CTRYAG	1 cut(s)	1219
SinI	GGWCC	2 cut(s)	142, 589
SmiMI	CAYNNNNRTG	2 cut(s)	705, 1230
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	7 cut(s)	22, 190, 279, 635, 747, 875, 1156
SseBI	AGGCCT	1 cut(s)	893
SsiI	CCGC	3 cut(s)	329, 418, 1162
SspI	AATATT	1 cut(s)	540
SspMI	CTAG	1 cut(s)	921
SstI	GAGCTC	3 cut(s)	115, 212, 1266
StuI	AGGCCT	1 cut(s)	893
StyD4I	CCNGG	5 cut(s)	340, 639, 914, 1205, 1237
StyI	CCWWGG	2 cut(s)	446, 592
TaaI	ACNGT	5 cut(s)	653, 658, 1190, 1220, 1312
TaiI	ACGT	2 cut(s)	300, 769
TasI	AATT	7 cut(s)	22, 190, 279, 635, 747, 875, 1156
TatI	WGTACW	1 cut(s)	1307
TfiI	GAWTC	3 cut(s)	509, 943, 1010
Tru1I	TTAA	5 cut(s)	453, 795, 936, 1079, 1151
Tru9I	TTAA	5 cut(s)	453, 795, 936, 1079, 1151
TscAI	CASTG	3 cut(s)	12, 812, 1131
TseFI	GTSAC	2 cut(s)	672, 1141
Tsp45I	GTSAC	2 cut(s)	672, 1141
TspDTI	ATGAA	8 cut(s)	43, 336, 378, 530, 1100, 1113, 1130, 1305
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	3 cut(s)	12, 812, 1131
VpaK11BI	GGWCC	2 cut(s)	142, 589
XapI	RAATTY	2 cut(s)	279, 635
XspI	CTAG	1 cut(s)	921
Zsp2I	ATGCAT	1 cut(s)	1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.