Rmu_sc0007985.1_g000006

Protein trichome birefringence-like 5

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007985.1
Physical Location & Seq
Reverse (-)
14366 .. 21198
6833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007985.1_g000006.1.cds

Sequence Viewer

Length: 1680 bp
atggcagtggcaacaccacccagtaattcttccccccaaaagagccgttacgccttcatcgctatcctattcatcaccctcttcctcttcaccattttcgtcttcaccaaacgagcccttgagccctctctctttctctacaaggactactttacccaaatcccctcttcttcttcttcttctccttctccttcatcttcttcttcttcaactaacaattcccaaatctctttgtcccaatccacctctgcacctacagcagacccaccttcttcgttgctccaatccacctctgcacagccaacccaggaacccagttcacgaagtgagttcagcgatgaaaatgtgcaagacccagatcttgaaaatcaaaatgtgcaagacccagatcgtgaaaatgaaaatgtggaagacccagacctgaaggagtccaatgaccaaaatggtggtgaaaatgagaacccagatggtaaaatgggtgaaattccgtgtgatttgtacgtgggaagttgggtgagagatgagcaatatccgctttacaaaccgggttcatgcccttatgttgatgaagcttttgattgccagagcaatgggaggagagactctgagtatctcaaatggcggtggaaacctgacggctgtgatcttccaaggtttaatgcaacagattttttggtgaggctacggggtaaaaggttgatgctcgtaggagattccatgaatcggaaccagtttgagtcaatattatgcctcctccgagaaggcttacataataagagcagaatgtatgaggtccatggccacaagatatccaagggaagaggctattttgttttcaaattccaggactatgactgtacggtggaatttgtgaggtcgcatttccttgtgaaagaaggagtccgctttaatgctcaagggaattcaaatccaactctatcaatggatcaaattgacaagacagctaaacgttggaagaaggctgacattcttgtctttaatactggccactggtggactcatggaaagactgctcgtgggaaaaactactacaaagaaggagattatctctatccaaaatttgatgcatctgaggcctatagacgggccctgaagacctgggctagctgggttgagcttaatgtgaatccaaaaaagcagttggtcttctatcgtgggtactcttcttcacatttcagaggtggagattgggattcaggtgggtcatgcaatggtgaaaaagaaccagccttctctggggccatactggatagctaccctttgaaaatgaagatagtggatgaagtaatcaaagaaatgaaggttccagtgaaagtattgaatgtgacaaggttgaccaatttccgcaaagatggccatccatcaatctacggtaagaaaggttccaccaggaagcaagactgcagccattggtgtgttcctggagtccctgatgcatggaatgagctaatctatgccactctggtttttcagcagaccaaatcaaagagtgcttgggaggtggggctaggcgggtctgctgctaggttttgctgggtgcgacttccagcgaaggcttccgttgtcactccttccacgtcgatctacgattgggctgccgtgtcggaggttggtcttccaattgggttttggaagctgactcacgagtttcctgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

559

Amino Acids

63.27

Weight (kDa)

7.53

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 992
AciI CCGC 5 cut(s) 533, 622, 904, 1366, 1533
AclI AACGTT 1 cut(s) 970
AclWI GGATC 1 cut(s) 954
AcoI YGGCCR 3 cut(s) 799, 1006, 1375
AcsI RAATTY 5 cut(s) 483, 839, 866, 922, 1079
AcuI CTGAAG 2 cut(s) 443, 1133
AdeI CACNNNGTG 1 cut(s) 326
AfaI GTAC 3 cut(s) 500, 859, 1181
AfiI CCNNNNNNNGG 3 cut(s) 723, 1104, 1257
AgsI TTSAA 6 cut(s) 210, 365, 838, 927, 1285, 1342
AjiI CACGTC 1 cut(s) 1599
AjnI CCWGG 5 cut(s) 306, 843, 1118, 1409, 1441
AluBI AGCT 7 cut(s) 572, 965, 1128, 1138, 1275, 1468, 1657
AluI AGCT 7 cut(s) 572, 965, 1128, 1138, 1275, 1468, 1657
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 1 cut(s) 954
AoxI GGCC 6 cut(s) 799, 1006, 1095, 1107, 1260, 1375
ApaI GGGCCC 1 cut(s) 1111
ApeKI GCWGC 3 cut(s) 1425, 1541, 1616
ApoI RAATTY 5 cut(s) 483, 839, 866, 922, 1079
AspS9I GGNCC 4 cut(s) 793, 1107, 1108, 1260
AsuC2I CCSGG 1 cut(s) 546
AsuHPI GGTGA 8 cut(s) 67, 82, 97, 461, 491, 526, 688, 1247
AsuNHI GCTAGC 1 cut(s) 1124
AvaII GGWCC 1 cut(s) 793
BaeGI GKGCMC 1 cut(s) 1111
BalI TGGCCA 3 cut(s) 801, 1008, 1377
BanII GRGCYC 3 cut(s) 118, 126, 1111
BauI CACGAG 2 cut(s) 1035, 1664
BbsI GAAGAC 5 cut(s) 94, 417, 1121, 1159, 1628
BbvI GCAGC 3 cut(s) 1437, 1528, 1603
BccI CCATC 4 cut(s) 461, 1367, 1386, 1390
BceAI ACGGC 3 cut(s) 30, 652, 1604
BcgI CGANNNNNNTGC 2 cut(s) 1598, 1632
BciT130I CCWGG 5 cut(s) 308, 845, 1120, 1411, 1443
BcnI CCSGG 1 cut(s) 546
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 3 cut(s) 1125, 1529, 1545
BfmI CTRYAG 3 cut(s) 255, 1099, 1423
BglII AGATCT 1 cut(s) 358
BisI GCNGC 3 cut(s) 1426, 1542, 1617
BlsI GCNGC 3 cut(s) 1427, 1543, 1618
Bme1390I CCNGG 6 cut(s) 308, 546, 845, 1120, 1411, 1443
Bme18I GGWCC 1 cut(s) 793
BmgBI CACGTC 1 cut(s) 1599
BmgT120I GGNCC 4 cut(s) 793, 1107, 1108, 1260
BmiI GGNNCC 6 cut(s) 312, 728, 1109, 1261, 1326, 1405
BmrFI CCNGG 6 cut(s) 308, 546, 845, 1120, 1411, 1443
BmrI ACTGGG 2 cut(s) 15, 309
BmsI GCATC 4 cut(s) 690, 1075, 1097, 1444
BmtI GCTAGC 1 cut(s) 1128
BmuI ACTGGG 2 cut(s) 15, 309
BpiI GAAGAC 5 cut(s) 94, 417, 1121, 1159, 1628
BplI GAGNNNNNCTC 2 cut(s) 1053, 1085
BpmI CTGGAG 1 cut(s) 1464
BpuEI CTTGAG 2 cut(s) 140, 900
BpuMI CCSGG 1 cut(s) 546
BsaAI YACGTR 1 cut(s) 502
BsaBI GATNNNNATC 1 cut(s) 1377
BsaJI CCNNGG 5 cut(s) 306, 650, 796, 813, 1119
Bsc4I CCNNNNNNNGG 3 cut(s) 723, 1104, 1257
Bse1I ACTGG 7 cut(s) 21, 315, 730, 1009, 1016, 1272, 1328
Bse3DI GCAATG 2 cut(s) 595, 1237
Bse8I GATNNNNATC 1 cut(s) 1377
BseBI CCWGG 5 cut(s) 308, 845, 1120, 1411, 1443
BseDI CCNNGG 5 cut(s) 306, 650, 796, 813, 1119
BseGI GGATG 2 cut(s) 1306, 1378
BseJI GATNNNNATC 1 cut(s) 1377
BseLI CCNNNNNNNGG 3 cut(s) 723, 1104, 1257
BseMI GCAATG 2 cut(s) 595, 1237
BseMII CTCAG 2 cut(s) 597, 1083
BseNI ACTGG 7 cut(s) 21, 315, 730, 1009, 1016, 1272, 1328
BseRI GAGGAG 2 cut(s) 610, 743
BseSI GKGCMC 1 cut(s) 1111
BseXI GCAGC 3 cut(s) 1437, 1528, 1603
BseYI CCCAGC 2 cut(s) 1128, 1554
BsgI GTGCAG 2 cut(s) 234, 279
BshFI GGCC 6 cut(s) 801, 1008, 1097, 1109, 1262, 1377
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 2 cut(s) 220, 1433
BslI CCNNNNNNNGG 3 cut(s) 723, 1104, 1257
BsmAI GTCTC 1 cut(s) 594
BsmFI GGGAC 2 cut(s) 220, 1433
BsnI GGCC 6 cut(s) 801, 1008, 1097, 1109, 1262, 1377
Bsp120I GGGCCC 1 cut(s) 1107
Bsp1286I GDGCHC 3 cut(s) 118, 126, 1111
Bsp143I GATC 5 cut(s) 358, 388, 643, 946, 1602
Bsp19I CCATGG 1 cut(s) 796
BspACI CCGC 5 cut(s) 533, 622, 904, 1366, 1533
BspANI GGCC 6 cut(s) 801, 1008, 1097, 1109, 1262, 1377
BspCNI CTCAG 2 cut(s) 598, 1084
BspLI GGNNCC 6 cut(s) 312, 728, 1109, 1261, 1326, 1405
BspMAI CTGCAG 1 cut(s) 1427
BspOI GCTAGC 1 cut(s) 1128
BspPI GGATC 1 cut(s) 954
BsrDI GCAATG 2 cut(s) 595, 1237
BsrI ACTGG 7 cut(s) 21, 315, 730, 1009, 1016, 1272, 1328
BssECI CCNNGG 5 cut(s) 306, 650, 796, 813, 1119
BssMI GATC 5 cut(s) 358, 388, 643, 946, 1602
BssSI CACGAG 2 cut(s) 1035, 1664
BssT1I CCWWGG 3 cut(s) 650, 796, 813
Bst2BI CACGAG 2 cut(s) 1035, 1664
Bst2UI CCWGG 5 cut(s) 308, 845, 1120, 1411, 1443
Bst4CI ACNGT 3 cut(s) 857, 862, 1394
Bst6I CTCTTC 5 cut(s) 86, 92, 172, 814, 1189
BstBAI YACGTR 1 cut(s) 502
BstC8I GCNNGC 1 cut(s) 1126
BstDEI CTNAG 2 cut(s) 606, 1092
BstDSI CCRYGG 1 cut(s) 796
BstF5I GGATG 2 cut(s) 1306, 1378
BstKTI GATC 5 cut(s) 361, 391, 646, 949, 1605
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 5 cut(s) 358, 388, 643, 946, 1602
BstMWI GCNNNNNNNGC 5 cut(s) 59, 257, 532, 1094, 1374
BstNI CCWGG 5 cut(s) 308, 845, 1120, 1411, 1443
BstSCI CCNGG 6 cut(s) 306, 544, 843, 1118, 1409, 1441
BstSFI CTRYAG 3 cut(s) 255, 1099, 1423
BstSLI GKGCMC 1 cut(s) 1111
BstV1I GCAGC 3 cut(s) 1437, 1528, 1603
BstV2I GAAGAC 5 cut(s) 94, 417, 1121, 1159, 1628
BstX2I RGATCY 1 cut(s) 358
BstXI CCANNNNNNTGG 2 cut(s) 446, 590
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 6 cut(s) 801, 1008, 1097, 1109, 1262, 1377
BtgI CCRYGG 1 cut(s) 796
BtgZI GCGATG 2 cut(s) 43, 351
BtrI CACGTC 1 cut(s) 1599
BtsCI GGATG 2 cut(s) 1306, 1378
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 1009, 1335
Cac8I GCNNGC 1 cut(s) 1126
Cfr13I GGNCC 4 cut(s) 793, 1107, 1108, 1260
Csp6I GTAC 3 cut(s) 499, 858, 1180
CviAII CATG 6 cut(s) 552, 718, 797, 1022, 1227, 1458
CviQI GTAC 3 cut(s) 499, 858, 1180
DdeI CTNAG 2 cut(s) 606, 1092
DpnI GATC 5 cut(s) 360, 390, 645, 948, 1604
DpnII GATC 5 cut(s) 358, 388, 643, 946, 1602
DraIII CACNNNGTG 1 cut(s) 326
DrdI GACNNNNNNGTC 1 cut(s) 992
DseDI GACNNNNNNGTC 1 cut(s) 992
EaeI YGGCCR 3 cut(s) 799, 1006, 1375
Eam1104I CTCTTC 5 cut(s) 86, 92, 172, 814, 1189
EarI CTCTTC 5 cut(s) 86, 92, 172, 814, 1189
Eco130I CCWWGG 3 cut(s) 650, 796, 813
Eco147I AGGCCT 1 cut(s) 1097
Eco24I GRGCYC 3 cut(s) 118, 126, 1111
Eco32I GATATC 1 cut(s) 810
Eco47I GGWCC 1 cut(s) 793
Eco57I CTGAAG 2 cut(s) 443, 1133
EcoO109I RGGNCCY 1 cut(s) 1108
EcoRI GAATTC 1 cut(s) 922
EcoRII CCWGG 5 cut(s) 306, 843, 1118, 1409, 1441
EcoRV GATATC 1 cut(s) 810
EcoT14I CCWWGG 3 cut(s) 650, 796, 813
EcoT22I ATGCAT 2 cut(s) 1090, 1459
EcoT38I GRGCYC 3 cut(s) 118, 126, 1111
ErhI CCWWGG 3 cut(s) 650, 796, 813
FaeI CATG 6 cut(s) 555, 721, 800, 1025, 1230, 1461
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 2 cut(s) 220, 1433
FatI CATG 6 cut(s) 551, 717, 796, 1021, 1226, 1457
FauI CCCGC 1 cut(s) 1526
Fnu4HI GCNGC 3 cut(s) 1426, 1542, 1617
FokI GGATG 2 cut(s) 1313, 1365
FriOI GRGCYC 3 cut(s) 118, 126, 1111
Fsp4HI GCNGC 3 cut(s) 1426, 1542, 1617
FspBI CTAG 3 cut(s) 1125, 1529, 1545
GluI GCNGC 3 cut(s) 1426, 1542, 1617
GsaI CCCAGC 2 cut(s) 1132, 1558
GsuI CTGGAG 1 cut(s) 1464
HaeIII GGCC 6 cut(s) 801, 1008, 1097, 1109, 1262, 1377
HapII CCGG 1 cut(s) 545
Hin1II CATG 6 cut(s) 555, 721, 800, 1025, 1230, 1461
HincII GTYRAC 1 cut(s) 1356
HindII GTYRAC 1 cut(s) 1356
HindIII AAGCTT 1 cut(s) 570
HpaII CCGG 1 cut(s) 545
HphI GGTGA 8 cut(s) 67, 82, 97, 461, 491, 526, 688, 1247
Hpy166II GTNNAC 3 cut(s) 320, 1017, 1356
Hpy188I TCNGA 6 cut(s) 607, 726, 758, 1093, 1199, 1627
Hpy188III TCNNGA 5 cut(s) 321, 362, 392, 1664, 1673
Hpy8I GTNNAC 3 cut(s) 320, 1017, 1356
Hpy99I CGWCG 1 cut(s) 1603
HpyCH4III ACNGT 3 cut(s) 857, 862, 1394
HpyCH4IV ACGT 3 cut(s) 501, 970, 1598
HpyCH4V TGCA 9 cut(s) 251, 296, 349, 379, 662, 1088, 1230, 1425, 1457
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 257, 532, 1094, 1374
HpyF3I CTNAG 2 cut(s) 606, 1092
HpySE526I ACGT 3 cut(s) 501, 970, 1598
Hsp92II CATG 6 cut(s) 555, 721, 800, 1025, 1230, 1461
Kzo9I GATC 5 cut(s) 358, 388, 643, 946, 1602
LmnI GCTCC 1 cut(s) 285
Lsp1109I GCAGC 3 cut(s) 1437, 1528, 1603
LweI GCATC 4 cut(s) 690, 1075, 1097, 1444
MaeI CTAG 3 cut(s) 1125, 1529, 1545
MaeII ACGT 3 cut(s) 501, 970, 1598
MaeIII GTNAC 3 cut(s) 47, 1345, 1585
MalI GATC 5 cut(s) 360, 390, 645, 948, 1604
MboI GATC 5 cut(s) 358, 388, 643, 946, 1602
MfeI CAATTG 1 cut(s) 1641
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 3 cut(s) 118, 126, 1111
MlsI TGGCCA 3 cut(s) 801, 1008, 1377
MluNI TGGCCA 3 cut(s) 801, 1008, 1377
MlyI GAGTC 7 cut(s) 437, 596, 746, 909, 1012, 1455, 1654
MmeI TCCRAC 3 cut(s) 953, 956, 1605
Mox20I TGGCCA 3 cut(s) 801, 1008, 1377
Mph1103I ATGCAT 2 cut(s) 1090, 1459
MscI TGGCCA 3 cut(s) 801, 1008, 1377
MseI TTAA 4 cut(s) 657, 909, 999, 1140
MslI CAYNNNNRTG 1 cut(s) 1434
Msp20I TGGCCA 3 cut(s) 801, 1008, 1377
MspI CCGG 1 cut(s) 545
MspR9I CCNGG 6 cut(s) 308, 546, 845, 1120, 1411, 1443
MunI CAATTG 1 cut(s) 1641
MvaI CCWGG 5 cut(s) 308, 845, 1120, 1411, 1443
MwoI GCNNNNNNNGC 5 cut(s) 59, 257, 532, 1094, 1374
NciI CCSGG 1 cut(s) 546
NcoI CCATGG 1 cut(s) 796
NdeII GATC 5 cut(s) 358, 388, 643, 946, 1602
NheI GCTAGC 1 cut(s) 1124
NlaIII CATG 6 cut(s) 555, 721, 800, 1025, 1230, 1461
NlaIV GGNNCC 6 cut(s) 312, 728, 1109, 1261, 1326, 1405
NmuCI GTSAC 2 cut(s) 1345, 1585
NsiI ATGCAT 2 cut(s) 1090, 1459
PceI AGGCCT 1 cut(s) 1097
PfeI GAWTC 4 cut(s) 713, 721, 1147, 1214
PfoI TCCNGGA 2 cut(s) 843, 1441
PkrI GCNGC 3 cut(s) 1427, 1543, 1618
PleI GAGTC 7 cut(s) 436, 596, 745, 908, 1012, 1454, 1654
PpsI GAGTC 7 cut(s) 436, 596, 745, 908, 1012, 1454, 1654
Ppu21I YACGTR 1 cut(s) 502
Psp1406I AACGTT 1 cut(s) 970
Psp6I CCWGG 5 cut(s) 306, 843, 1118, 1409, 1441
PspFI CCCAGC 2 cut(s) 1128, 1554
PspGI CCWGG 5 cut(s) 306, 843, 1118, 1409, 1441
PspN4I GGNNCC 6 cut(s) 312, 728, 1109, 1261, 1326, 1405
PspOMI GGGCCC 1 cut(s) 1107
PspPI GGNCC 4 cut(s) 793, 1107, 1108, 1260
PsrI GAACNNNNNNTAC 2 cut(s) 1387, 1419
PstI CTGCAG 1 cut(s) 1427
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 3 cut(s) 500, 859, 1181
RsaNI GTAC 3 cut(s) 499, 858, 1180
RseI CAYNNNNRTG 1 cut(s) 1434
SaqAI TTAA 4 cut(s) 657, 909, 999, 1140
SatI GCNGC 3 cut(s) 1426, 1542, 1617
Sau3AI GATC 5 cut(s) 358, 388, 643, 946, 1602
Sau96I GGNCC 4 cut(s) 793, 1107, 1108, 1260
SchI GAGTC 7 cut(s) 437, 596, 746, 909, 1012, 1455, 1654
ScrFI CCNGG 6 cut(s) 308, 546, 845, 1120, 1411, 1443
SduI GDGCHC 3 cut(s) 118, 126, 1111
SfaNI GCATC 4 cut(s) 690, 1075, 1097, 1444
SfcI CTRYAG 3 cut(s) 255, 1099, 1423
SinI GGWCC 1 cut(s) 793
SmiMI CAYNNNNRTG 1 cut(s) 1434
SmlI CTYRAG 2 cut(s) 119, 915
SmoI CTYRAG 2 cut(s) 119, 915
SseBI AGGCCT 1 cut(s) 1097
SsiI CCGC 5 cut(s) 533, 622, 904, 1366, 1533
SspI AATATT 1 cut(s) 744
SspMI CTAG 3 cut(s) 1125, 1529, 1545
StuI AGGCCT 1 cut(s) 1097
StyD4I CCNGG 6 cut(s) 306, 544, 843, 1118, 1409, 1441
StyI CCWWGG 3 cut(s) 650, 796, 813
TaaI ACNGT 3 cut(s) 857, 862, 1394
TaiI ACGT 3 cut(s) 504, 973, 1601
TaqI TCGA 1 cut(s) 1601
TfiI GAWTC 4 cut(s) 713, 721, 1147, 1214
Tru1I TTAA 4 cut(s) 657, 909, 999, 1140
Tru9I TTAA 4 cut(s) 657, 909, 999, 1140
TscAI CASTG 3 cut(s) 12, 1016, 1335
TseFI GTSAC 2 cut(s) 1345, 1585
TseI GCWGC 3 cut(s) 1425, 1541, 1616
Tsp45I GTSAC 2 cut(s) 1345, 1585
TspGWI ACGGA 2 cut(s) 477, 1570
TspRI CASTG 3 cut(s) 12, 1016, 1335
VpaK11BI GGWCC 1 cut(s) 793
XapI RAATTY 5 cut(s) 483, 839, 866, 922, 1079
XcmI CCANNNNNNNNNTGG 1 cut(s) 1647
XspI CTAG 3 cut(s) 1125, 1529, 1545
Zsp2I ATGCAT 2 cut(s) 1090, 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.