AT5G20590

PMR5 N terminal Domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6963338 .. 6966226
2889 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20590.1

Sequence Viewer

Length: 1458 bp
ATGTCGACTTCTTCTTCTTTCCCTCGAACCATCGTCTCCTACACTGTGACAACTTCGCTCTTCATCGTTATCTTCCTATGCAGCGTCTTCTTCTTCACTAGACGCACTCTCGAACCTTCTCTCTCTCCTTACCACACCGCCGACATCCCTCTCCCCGCCGTCGATCTACCACCTCCTACGCCTCTCCTCCCTCAAATCGAGCCTCACGATGGTGACGTCACCGTGGAAACGAATCCTAAGGAGGTAGAAGATTCGCGCCGCGGAGGCGATGACGTCGCGGTAGAGACTGAGCTGAAACTGAAAGATGTGGAAGATTCGCACACGGAGAAAACCGAGGAGGAGGAAGAAGGTAGAGGAGAATCGCCCGGTGAAGTTTCCGTAGAATCTGTGGAACATGCGGTGATTGAGAAGATGAGAGGCTGTGATTTGTACAAGGGATCGTGGGTTAAGGGCGATGATGAGTATCCATTGTATCAGCCTGGATCGTGTCCTTATGTGGACGATGCTTTTGATTGCCAGAGGAATGGGAGGCGTGATTCTGACTATCTTAATTGGAGATGGAAGCCTGACGGTTGTGATCTTCCACGGTTTAATGCTACAGACTTCTTGGTGAAGCTACGAGGTAAAAGTTTGATGTTGGTTGGAGATTCAATGAATCGTAACCAGTTTGAATCAATGCTTTGCGTTCTACGAGAAGGTTTATCGGATAAGAGTAGAATGTATGAGGTTCATGGCCATAATATAACAAAAGGGAGAGGCTACTTTGTATTCAAGTTTGAAGATTATAATTGCACAGTAGAGTTTGTGAGGTCACATTTTCTTGTGAGGGAAGGAGTTAGAGCAAATGCTCAAGGAAATACTAATCCGACCCTTTCCATTGATCGCATTGACAAGTCACATGCTAAATGGAAGCGAGCTGACATTCTTGTCTTTAACACTGGACATTGGTGGGTTCATGGAAAGACCGCCAGAGGGAAAAACTACTACAAAGAAGGTGACTACATCTACCCGAAATTTGATGCTACTGAAGCATACAGAAGGTCGTTGAAGACTTGGGCAAAATGGATCGATCAGAATGTGAATCCCAAAAAGCAGCTTGTATTTTATCGCGGATACTCCTCTGCCCATTTTCGGGGAGGTGAGTGGGACTCGGGAGGGTCATGCAACGGGGAGGTAGAACCTGTGAAGAAGGGTTCAATCATCGATTCCTATCCTTTGAAAATGAAGATAGTCCAGGAAGCCATAAAGGAGATGCAAGTTCCTGTGATTCTTCTAAACGTGACAAAGCTGACTAATTTCCGCAAAGACGGACATCCATCAATCTACGGTAAGACCAACACGGATGGTAAGAAAGTGTCGACAAGGCGACAGGATTGCAGCCACTGGTGCCTGCCGGGAGTTCCCGATGTTTGGAACCATCTTATCTACGCATCTTTGCTCCTTCAACCACATTCTTAA

Protein Analysis

485

Amino Acids

55.39

Weight (kDa)

6.45

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 140 - 193 7.2e-22 PMR5 N terminal Domain
PC-Esterase PF13839 194 - 477 5.6e-100 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 786
AasI GACNNNNNNGTC 1 cut(s) 926
AatII GACGTC 2 cut(s) 219, 276
AccB1I GGYRCC 1 cut(s) 1386
AccI GTMKAC 2 cut(s) 5, 1358
AccII CGCG 4 cut(s) 256, 261, 278, 1110
AciI CCGC 9 cut(s) 138, 156, 259, 261, 278, 398, 966, 1110, 1300
AclWI GGATC 3 cut(s) 445, 490, 1073
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 1 cut(s) 1013
AcuI CTGAAG 1 cut(s) 1047
AcyI GRCGYC 2 cut(s) 216, 273
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 5 cut(s) 209, 972, 1131, 1132, 1410
AgsI TTSAA 8 cut(s) 651, 671, 772, 779, 1048, 1197, 1219, 1445
AjnI CCWGG 2 cut(s) 478, 1233
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 5 cut(s) 292, 616, 917, 1096, 1288
AluI AGCT 5 cut(s) 292, 616, 917, 1096, 1288
Alw26I GTCTC 2 cut(s) 40, 278
AlwI GGATC 3 cut(s) 445, 490, 1073
AlwNI CAGNNNCTG 1 cut(s) 1383
Ama87I CYCGRG 1 cut(s) 1150
AoxI GGCC 1 cut(s) 733
ApeKI GCWGC 3 cut(s) 81, 1093, 1377
ApoI RAATTY 1 cut(s) 1013
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AspLEI GCGC 1 cut(s) 258
AsuC2I CCSGG 2 cut(s) 366, 1395
AsuHPI GGTGA 7 cut(s) 211, 224, 380, 412, 622, 1007, 1151
AvaI CYCGRG 1 cut(s) 1150
AxyI CCTNAGG 1 cut(s) 237
BalI TGGCCA 1 cut(s) 735
BanI GGYRCC 1 cut(s) 1386
BbsI GAAGAC 2 cut(s) 79, 1055
BbvI GCAGC 3 cut(s) 93, 1105, 1389
BccI CCATC 6 cut(s) 38, 203, 552, 1324, 1337, 1425
BceAI ACGGC 1 cut(s) 143
BcgI CGANNNNNNTGC 2 cut(s) 1356, 1390
BciT130I CCWGG 2 cut(s) 480, 1235
BciVI GTATCC 2 cut(s) 474, 1106
BcnI CCSGG 2 cut(s) 366, 1395
BcoDI GTCTC 2 cut(s) 40, 278
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 597
BfuI GTATCC 2 cut(s) 474, 1106
BglI GCCNNNNNGGC 1 cut(s) 264
BisI GCNGC 4 cut(s) 82, 259, 1094, 1378
BlsI GCNGC 4 cut(s) 83, 260, 1095, 1379
Bme1390I CCNGG 4 cut(s) 366, 480, 1235, 1395
BmeT110I CYCGRG 1 cut(s) 1150
BmiI GGNNCC 2 cut(s) 1388, 1415
BmrFI CCNGG 4 cut(s) 366, 480, 1235, 1395
BmsI GCATC 4 cut(s) 493, 1009, 1242, 1439
BpiI GAAGAC 2 cut(s) 79, 1055
BplI GAGNNNNNCTC 2 cut(s) 1133, 1165
BpuEI CTTGAG 1 cut(s) 834
BpuMI CCSGG 2 cut(s) 366, 1395
Bsa29I ATCGAT 2 cut(s) 1068, 1203
BsaBI GATNNNNATC 2 cut(s) 462, 1209
BsaHI GRCGYC 2 cut(s) 216, 273
BsaJI CCNNGG 4 cut(s) 222, 259, 333, 584
Bsc4I CCNNNNNNNGG 5 cut(s) 209, 972, 1131, 1132, 1410
Bse1I ACTGG 3 cut(s) 664, 943, 1388
Bse21I CCTNAGG 1 cut(s) 237
Bse8I GATNNNNATC 2 cut(s) 462, 1209
BseBI CCWGG 2 cut(s) 480, 1235
BseCI ATCGAT 2 cut(s) 1068, 1203
BseDI CCNNGG 4 cut(s) 222, 259, 333, 584
BseGI GGATG 3 cut(s) 144, 1312, 1348
BseJI GATNNNNATC 2 cut(s) 462, 1209
BseLI CCNNNNNNNGG 5 cut(s) 209, 972, 1131, 1132, 1410
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 3 cut(s) 664, 943, 1388
BseRI GAGGAG 5 cut(s) 176, 350, 353, 369, 1108
BseXI GCAGC 3 cut(s) 93, 1105, 1389
Bsh1236I CGCG 4 cut(s) 256, 261, 278, 1110
BshFI GGCC 1 cut(s) 735
BshNI GGYRCC 1 cut(s) 1386
BshVI ATCGAT 2 cut(s) 1068, 1203
BsiHKCI CYCGRG 1 cut(s) 1150
BsiSI CCGG 2 cut(s) 366, 1394
BslFI GGGAC 1 cut(s) 1160
BslI CCNNNNNNNGG 5 cut(s) 209, 972, 1131, 1132, 1410
BsmAI GTCTC 2 cut(s) 40, 278
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 1160
BsnI GGCC 1 cut(s) 735
BsoBI CYCGRG 1 cut(s) 1150
Bsp1407I TGTACA 1 cut(s) 429
Bsp143I GATC 7 cut(s) 163, 437, 482, 577, 880, 1065, 1069
BspACI CCGC 9 cut(s) 138, 156, 259, 261, 278, 398, 966, 1110, 1300
BspANI GGCC 1 cut(s) 735
BspCNI CTCAG 1 cut(s) 280
BspDI ATCGAT 2 cut(s) 1068, 1203
BspFNI CGCG 4 cut(s) 256, 261, 278, 1110
BspLI GGNNCC 2 cut(s) 1388, 1415
BspPI GGATC 3 cut(s) 445, 490, 1073
BspQI GCTCTTC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 1386
BsrGI TGTACA 1 cut(s) 429
BsrI ACTGG 3 cut(s) 664, 943, 1388
BssECI CCNNGG 4 cut(s) 222, 259, 333, 584
BssMI GATC 7 cut(s) 163, 437, 482, 577, 880, 1065, 1069
BssNI GRCGYC 2 cut(s) 216, 273
Bst2UI CCWGG 2 cut(s) 480, 1235
Bst4CI ACNGT 6 cut(s) 46, 223, 572, 588, 796, 1328
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 2 cut(s) 216, 273
BstAUI TGTACA 1 cut(s) 429
BstC8I GCNNGC 2 cut(s) 915, 1391
BstDEI CTNAG 2 cut(s) 237, 288
BstDSI CCRYGG 3 cut(s) 222, 259, 584
BstF5I GGATG 3 cut(s) 144, 1312, 1348
BstFNI CGCG 4 cut(s) 256, 261, 278, 1110
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 7 cut(s) 166, 440, 485, 580, 883, 1068, 1072
BstMAI GTCTC 2 cut(s) 40, 278
BstMBI GATC 7 cut(s) 163, 437, 482, 577, 880, 1065, 1069
BstMWI GCNNNNNNNGC 3 cut(s) 264, 1028, 1386
BstNI CCWGG 2 cut(s) 480, 1235
BstNSI RCATGY 2 cut(s) 398, 902
BstSCI CCNGG 4 cut(s) 364, 478, 1233, 1393
BstSFI CTRYAG 1 cut(s) 597
BstUI CGCG 4 cut(s) 256, 261, 278, 1110
BstV1I GCAGC 3 cut(s) 93, 1105, 1389
BstV2I GAAGAC 2 cut(s) 79, 1055
BstXI CCANNNNNNTGG 1 cut(s) 524
Bsu15I ATCGAT 2 cut(s) 1068, 1203
Bsu36I CCTNAGG 1 cut(s) 237
BsuI GTATCC 2 cut(s) 474, 1106
BsuRI GGCC 1 cut(s) 735
BsuTUI ATCGAT 2 cut(s) 1068, 1203
BtgI CCRYGG 3 cut(s) 222, 259, 584
BtgZI GCGATG 2 cut(s) 282, 468
BtsCI GGATG 3 cut(s) 144, 1312, 1348
BtsIMutI CAGTG 3 cut(s) 42, 936, 1381
Cac8I GCNNGC 2 cut(s) 915, 1391
CaiI CAGNNNCTG 1 cut(s) 1383
CfoI GCGC 1 cut(s) 258
Cfr42I CCGCGG 1 cut(s) 262
ClaI ATCGAT 2 cut(s) 1068, 1203
CseI GACGC 2 cut(s) 73, 111
Csp6I GTAC 1 cut(s) 430
CviAII CATG 5 cut(s) 395, 731, 899, 956, 1161
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 2 cut(s) 237, 288
DpnI GATC 7 cut(s) 165, 439, 484, 579, 882, 1067, 1071
DpnII GATC 7 cut(s) 163, 437, 482, 577, 880, 1065, 1069
DrdI GACNNNNNNGTC 1 cut(s) 926
DseDI GACNNNNNNGTC 1 cut(s) 926
EaeI YGGCCR 1 cut(s) 733
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 1047
Eco81I CCTNAGG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 1150
EcoRII CCWGG 2 cut(s) 478, 1233
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 5 cut(s) 398, 734, 902, 959, 1164
FaqI GGGAC 1 cut(s) 1160
FatI CATG 5 cut(s) 394, 730, 898, 955, 1160
FauI CCCGC 1 cut(s) 163
FblI GTMKAC 2 cut(s) 5, 1358
Fnu4HI GCNGC 4 cut(s) 82, 259, 1094, 1378
FokI GGATG 3 cut(s) 131, 1299, 1355
Fsp4HI GCNGC 4 cut(s) 82, 259, 1094, 1378
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 257
GluI GCNGC 4 cut(s) 82, 259, 1094, 1378
HaeIII GGCC 1 cut(s) 735
HapII CCGG 2 cut(s) 366, 1394
HgaI GACGC 2 cut(s) 73, 111
HhaI GCGC 1 cut(s) 258
Hin1I GRCGYC 2 cut(s) 216, 273
Hin1II CATG 5 cut(s) 398, 734, 902, 959, 1164
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HincII GTYRAC 2 cut(s) 6, 1359
HindII GTYRAC 2 cut(s) 6, 1359
HpaII CCGG 2 cut(s) 366, 1394
HphI GGTGA 7 cut(s) 211, 224, 380, 412, 622, 1007, 1151
Hpy166II GTNNAC 3 cut(s) 6, 499, 1359
Hpy188I TCNGA 4 cut(s) 541, 706, 867, 1074
Hpy188III TCNNGA 4 cut(s) 110, 206, 1152, 1403
Hpy8I GTNNAC 3 cut(s) 6, 499, 1359
Hpy99I CGWCG 2 cut(s) 164, 278
HpyAV CCTTC 8 cut(s) 126, 341, 689, 824, 986, 1032, 1183, 1451
HpyCH4III ACNGT 6 cut(s) 46, 223, 572, 588, 796, 1328
HpyCH4IV ACGT 3 cut(s) 216, 273, 1278
HpyCH4V TGCA 5 cut(s) 81, 792, 1164, 1255, 1377
HpyF10VI GCNNNNNNNGC 3 cut(s) 264, 1028, 1386
HpyF3I CTNAG 2 cut(s) 237, 288
HpySE526I ACGT 3 cut(s) 216, 273, 1278
Hsp92I GRCGYC 2 cut(s) 216, 273
Hsp92II CATG 5 cut(s) 398, 734, 902, 959, 1164
HspAI GCGC 1 cut(s) 256
KspI CCGCGG 1 cut(s) 262
Kzo9I GATC 7 cut(s) 163, 437, 482, 577, 880, 1065, 1069
LguI GCTCTTC 1 cut(s) 65
LmnI GCTCC 1 cut(s) 1443
Lsp1109I GCAGC 3 cut(s) 93, 1105, 1389
LweI GCATC 4 cut(s) 493, 1009, 1242, 1439
MaeI CTAG 1 cut(s) 99
MaeII ACGT 3 cut(s) 216, 273, 1278
MaeIII GTNAC 8 cut(s) 46, 212, 217, 659, 810, 894, 995, 1279
MalI GATC 7 cut(s) 165, 439, 484, 579, 882, 1067, 1071
MboI GATC 7 cut(s) 163, 437, 482, 577, 880, 1065, 1069
MlsI TGGCCA 1 cut(s) 735
MluCI AATT 4 cut(s) 550, 787, 1013, 1294
MluNI TGGCCA 1 cut(s) 735
MlyI GAGTC 1 cut(s) 1142
MmeI TCCRAC 2 cut(s) 622, 890
Mox20I TGGCCA 1 cut(s) 735
MscI TGGCCA 1 cut(s) 735
MseI TTAA 5 cut(s) 447, 549, 591, 933, 1456
MslI CAYNNNNRTG 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 735
MspA1I CMGCKG 1 cut(s) 261
MspI CCGG 2 cut(s) 366, 1394
MspR9I CCNGG 4 cut(s) 366, 480, 1235, 1395
MvaI CCWGG 2 cut(s) 480, 1235
MvnI CGCG 4 cut(s) 256, 261, 278, 1110
MwoI GCNNNNNNNGC 3 cut(s) 264, 1028, 1386
NciI CCSGG 2 cut(s) 366, 1395
NdeII GATC 7 cut(s) 163, 437, 482, 577, 880, 1065, 1069
NlaIII CATG 5 cut(s) 398, 734, 902, 959, 1164
NlaIV GGNNCC 2 cut(s) 1388, 1415
NmuCI GTSAC 7 cut(s) 46, 212, 217, 810, 894, 995, 1279
NspI RCATGY 2 cut(s) 398, 902
OliI CACNNNNGTG 1 cut(s) 210
PciSI GCTCTTC 1 cut(s) 65
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 213
PfoI TCCNGGA 1 cut(s) 1233
PkrI GCNGC 4 cut(s) 83, 260, 1095, 1379
PleI GAGTC 1 cut(s) 1142
PpsI GAGTC 1 cut(s) 1142
PsiI TTATAA 1 cut(s) 786
Psp6I CCWGG 2 cut(s) 478, 1233
PspGI CCWGG 2 cut(s) 478, 1233
PspN4I GGNNCC 2 cut(s) 1388, 1415
PstNI CAGNNNCTG 1 cut(s) 1383
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 210
SacII CCGCGG 1 cut(s) 262
SalI GTCGAC 2 cut(s) 4, 1357
SapI GCTCTTC 1 cut(s) 65
SaqAI TTAA 5 cut(s) 447, 549, 591, 933, 1456
SatI GCNGC 4 cut(s) 82, 259, 1094, 1378
Sau3AI GATC 7 cut(s) 163, 437, 482, 577, 880, 1065, 1069
SchI GAGTC 1 cut(s) 1142
ScrFI CCNGG 4 cut(s) 366, 480, 1235, 1395
SfaNI GCATC 4 cut(s) 493, 1009, 1242, 1439
SfcI CTRYAG 1 cut(s) 597
Sfr303I CCGCGG 1 cut(s) 262
SgrBI CCGCGG 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 849
SmoI CTYRAG 1 cut(s) 849
Sse9I AATT 4 cut(s) 550, 787, 1013, 1294
SsiI CCGC 9 cut(s) 138, 156, 259, 261, 278, 398, 966, 1110, 1300
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 4 cut(s) 364, 478, 1233, 1393
TaaI ACNGT 6 cut(s) 46, 223, 572, 588, 796, 1328
TaiI ACGT 3 cut(s) 219, 276, 1281
TaqI TCGA 8 cut(s) 5, 25, 111, 162, 198, 1068, 1203, 1358
TasI AATT 4 cut(s) 550, 787, 1013, 1294
TatI WGTACW 1 cut(s) 429
TauI GCSGC 1 cut(s) 261
Tru1I TTAA 5 cut(s) 447, 549, 591, 933, 1456
Tru9I TTAA 5 cut(s) 447, 549, 591, 933, 1456
TscAI CASTG 3 cut(s) 49, 943, 1388
TseFI GTSAC 7 cut(s) 46, 212, 217, 810, 894, 995, 1279
TseI GCWGC 3 cut(s) 81, 1093, 1377
Tsp45I GTSAC 7 cut(s) 46, 212, 217, 810, 894, 995, 1279
TspDTI ATGAA 5 cut(s) 52, 668, 719, 944, 1238
TspGWI ACGGA 4 cut(s) 338, 367, 1323, 1355
TspRI CASTG 3 cut(s) 49, 943, 1388
XapI RAATTY 1 cut(s) 1013
XceI RCATGY 2 cut(s) 398, 902
XmiI GTMKAC 2 cut(s) 5, 1358
XspI CTAG 1 cut(s) 99
ZraI GACGTC 2 cut(s) 217, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.