PMR5 N terminal Domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G20590 AT5G20590 |
| fragaria_vesca | FvH4_4g06600 |
| malus_domestica | MD16G1241800.v1.1 |
| prunus_persica | Prupe.1G068600_v2.0.a1 Prupe.1G068600_v2.0.a1 |
| pyrus_communis | pycom16g20260 |
| rosa_chinensis | RchiOBHm_Chr4g0398501 RchiOBHm_Chr4g0398521 |
| rosa_laevigata | RLG00000009351 RLG00000009358 |
| rosa_multiflora | Rmu_sc0007985.1_g000006 Rmu_ssc0000240.1_g000023 |
| rosa_roxburghii | Rroxscaffold_5G00343470 Rroxscaffold_5G00343480 |
| rosa_rugosa | Rorug04G0008800 |
| rosa_samantha | Rh4AG086900 Rh4BG083500 Rh4CG094900 Rh4CG095000 Rh4DG078300 |
| rosa_wichuraiana | Rw4G007240 Rw4G007250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 786 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 926 |
| AatII | GACGTC | 2 cut(s) | 219, 276 |
| AccB1I | GGYRCC | 1 cut(s) | 1386 |
| AccI | GTMKAC | 2 cut(s) | 5, 1358 |
| AccII | CGCG | 4 cut(s) | 256, 261, 278, 1110 |
| AciI | CCGC | 9 cut(s) | 138, 156, 259, 261, 278, 398, 966, 1110, 1300 |
| AclWI | GGATC | 3 cut(s) | 445, 490, 1073 |
| AcoI | YGGCCR | 1 cut(s) | 733 |
| AcsI | RAATTY | 1 cut(s) | 1013 |
| AcuI | CTGAAG | 1 cut(s) | 1047 |
| AcyI | GRCGYC | 2 cut(s) | 216, 273 |
| AfaI | GTAC | 1 cut(s) | 431 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 209, 972, 1131, 1132, 1410 |
| AgsI | TTSAA | 8 cut(s) | 651, 671, 772, 779, 1048, 1197, 1219, 1445 |
| AjnI | CCWGG | 2 cut(s) | 478, 1233 |
| AleI | CACNNNNGTG | 1 cut(s) | 210 |
| AluBI | AGCT | 5 cut(s) | 292, 616, 917, 1096, 1288 |
| AluI | AGCT | 5 cut(s) | 292, 616, 917, 1096, 1288 |
| Alw26I | GTCTC | 2 cut(s) | 40, 278 |
| AlwI | GGATC | 3 cut(s) | 445, 490, 1073 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1383 |
| Ama87I | CYCGRG | 1 cut(s) | 1150 |
| AoxI | GGCC | 1 cut(s) | 733 |
| ApeKI | GCWGC | 3 cut(s) | 81, 1093, 1377 |
| ApoI | RAATTY | 1 cut(s) | 1013 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 491, 523 |
| AspLEI | GCGC | 1 cut(s) | 258 |
| AsuC2I | CCSGG | 2 cut(s) | 366, 1395 |
| AsuHPI | GGTGA | 7 cut(s) | 211, 224, 380, 412, 622, 1007, 1151 |
| AvaI | CYCGRG | 1 cut(s) | 1150 |
| AxyI | CCTNAGG | 1 cut(s) | 237 |
| BalI | TGGCCA | 1 cut(s) | 735 |
| BanI | GGYRCC | 1 cut(s) | 1386 |
| BbsI | GAAGAC | 2 cut(s) | 79, 1055 |
| BbvI | GCAGC | 3 cut(s) | 93, 1105, 1389 |
| BccI | CCATC | 6 cut(s) | 38, 203, 552, 1324, 1337, 1425 |
| BceAI | ACGGC | 1 cut(s) | 143 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1356, 1390 |
| BciT130I | CCWGG | 2 cut(s) | 480, 1235 |
| BciVI | GTATCC | 2 cut(s) | 474, 1106 |
| BcnI | CCSGG | 2 cut(s) | 366, 1395 |
| BcoDI | GTCTC | 2 cut(s) | 40, 278 |
| BfaI | CTAG | 1 cut(s) | 99 |
| BfmI | CTRYAG | 1 cut(s) | 597 |
| BfuI | GTATCC | 2 cut(s) | 474, 1106 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 264 |
| BisI | GCNGC | 4 cut(s) | 82, 259, 1094, 1378 |
| BlsI | GCNGC | 4 cut(s) | 83, 260, 1095, 1379 |
| Bme1390I | CCNGG | 4 cut(s) | 366, 480, 1235, 1395 |
| BmeT110I | CYCGRG | 1 cut(s) | 1150 |
| BmiI | GGNNCC | 2 cut(s) | 1388, 1415 |
| BmrFI | CCNGG | 4 cut(s) | 366, 480, 1235, 1395 |
| BmsI | GCATC | 4 cut(s) | 493, 1009, 1242, 1439 |
| BpiI | GAAGAC | 2 cut(s) | 79, 1055 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1133, 1165 |
| BpuEI | CTTGAG | 1 cut(s) | 834 |
| BpuMI | CCSGG | 2 cut(s) | 366, 1395 |
| Bsa29I | ATCGAT | 2 cut(s) | 1068, 1203 |
| BsaBI | GATNNNNATC | 2 cut(s) | 462, 1209 |
| BsaHI | GRCGYC | 2 cut(s) | 216, 273 |
| BsaJI | CCNNGG | 4 cut(s) | 222, 259, 333, 584 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 209, 972, 1131, 1132, 1410 |
| Bse1I | ACTGG | 3 cut(s) | 664, 943, 1388 |
| Bse21I | CCTNAGG | 1 cut(s) | 237 |
| Bse8I | GATNNNNATC | 2 cut(s) | 462, 1209 |
| BseBI | CCWGG | 2 cut(s) | 480, 1235 |
| BseCI | ATCGAT | 2 cut(s) | 1068, 1203 |
| BseDI | CCNNGG | 4 cut(s) | 222, 259, 333, 584 |
| BseGI | GGATG | 3 cut(s) | 144, 1312, 1348 |
| BseJI | GATNNNNATC | 2 cut(s) | 462, 1209 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 209, 972, 1131, 1132, 1410 |
| BseMII | CTCAG | 1 cut(s) | 279 |
| BseNI | ACTGG | 3 cut(s) | 664, 943, 1388 |
| BseRI | GAGGAG | 5 cut(s) | 176, 350, 353, 369, 1108 |
| BseXI | GCAGC | 3 cut(s) | 93, 1105, 1389 |
| Bsh1236I | CGCG | 4 cut(s) | 256, 261, 278, 1110 |
| BshFI | GGCC | 1 cut(s) | 735 |
| BshNI | GGYRCC | 1 cut(s) | 1386 |
| BshVI | ATCGAT | 2 cut(s) | 1068, 1203 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1150 |
| BsiSI | CCGG | 2 cut(s) | 366, 1394 |
| BslFI | GGGAC | 1 cut(s) | 1160 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 209, 972, 1131, 1132, 1410 |
| BsmAI | GTCTC | 2 cut(s) | 40, 278 |
| BsmBI | CGTCTC | 1 cut(s) | 40 |
| BsmFI | GGGAC | 1 cut(s) | 1160 |
| BsnI | GGCC | 1 cut(s) | 735 |
| BsoBI | CYCGRG | 1 cut(s) | 1150 |
| Bsp1407I | TGTACA | 1 cut(s) | 429 |
| Bsp143I | GATC | 7 cut(s) | 163, 437, 482, 577, 880, 1065, 1069 |
| BspACI | CCGC | 9 cut(s) | 138, 156, 259, 261, 278, 398, 966, 1110, 1300 |
| BspANI | GGCC | 1 cut(s) | 735 |
| BspCNI | CTCAG | 1 cut(s) | 280 |
| BspDI | ATCGAT | 2 cut(s) | 1068, 1203 |
| BspFNI | CGCG | 4 cut(s) | 256, 261, 278, 1110 |
| BspLI | GGNNCC | 2 cut(s) | 1388, 1415 |
| BspPI | GGATC | 3 cut(s) | 445, 490, 1073 |
| BspQI | GCTCTTC | 1 cut(s) | 65 |
| BspT107I | GGYRCC | 1 cut(s) | 1386 |
| BsrGI | TGTACA | 1 cut(s) | 429 |
| BsrI | ACTGG | 3 cut(s) | 664, 943, 1388 |
| BssECI | CCNNGG | 4 cut(s) | 222, 259, 333, 584 |
| BssMI | GATC | 7 cut(s) | 163, 437, 482, 577, 880, 1065, 1069 |
| BssNI | GRCGYC | 2 cut(s) | 216, 273 |
| Bst2UI | CCWGG | 2 cut(s) | 480, 1235 |
| Bst4CI | ACNGT | 6 cut(s) | 46, 223, 572, 588, 796, 1328 |
| Bst6I | CTCTTC | 1 cut(s) | 65 |
| BstACI | GRCGYC | 2 cut(s) | 216, 273 |
| BstAUI | TGTACA | 1 cut(s) | 429 |
| BstC8I | GCNNGC | 2 cut(s) | 915, 1391 |
| BstDEI | CTNAG | 2 cut(s) | 237, 288 |
| BstDSI | CCRYGG | 3 cut(s) | 222, 259, 584 |
| BstF5I | GGATG | 3 cut(s) | 144, 1312, 1348 |
| BstFNI | CGCG | 4 cut(s) | 256, 261, 278, 1110 |
| BstHHI | GCGC | 1 cut(s) | 258 |
| BstKTI | GATC | 7 cut(s) | 166, 440, 485, 580, 883, 1068, 1072 |
| BstMAI | GTCTC | 2 cut(s) | 40, 278 |
| BstMBI | GATC | 7 cut(s) | 163, 437, 482, 577, 880, 1065, 1069 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 264, 1028, 1386 |
| BstNI | CCWGG | 2 cut(s) | 480, 1235 |
| BstNSI | RCATGY | 2 cut(s) | 398, 902 |
| BstSCI | CCNGG | 4 cut(s) | 364, 478, 1233, 1393 |
| BstSFI | CTRYAG | 1 cut(s) | 597 |
| BstUI | CGCG | 4 cut(s) | 256, 261, 278, 1110 |
| BstV1I | GCAGC | 3 cut(s) | 93, 1105, 1389 |
| BstV2I | GAAGAC | 2 cut(s) | 79, 1055 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 524 |
| Bsu15I | ATCGAT | 2 cut(s) | 1068, 1203 |
| Bsu36I | CCTNAGG | 1 cut(s) | 237 |
| BsuI | GTATCC | 2 cut(s) | 474, 1106 |
| BsuRI | GGCC | 1 cut(s) | 735 |
| BsuTUI | ATCGAT | 2 cut(s) | 1068, 1203 |
| BtgI | CCRYGG | 3 cut(s) | 222, 259, 584 |
| BtgZI | GCGATG | 2 cut(s) | 282, 468 |
| BtsCI | GGATG | 3 cut(s) | 144, 1312, 1348 |
| BtsIMutI | CAGTG | 3 cut(s) | 42, 936, 1381 |
| Cac8I | GCNNGC | 2 cut(s) | 915, 1391 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1383 |
| CfoI | GCGC | 1 cut(s) | 258 |
| Cfr42I | CCGCGG | 1 cut(s) | 262 |
| ClaI | ATCGAT | 2 cut(s) | 1068, 1203 |
| CseI | GACGC | 2 cut(s) | 73, 111 |
| Csp6I | GTAC | 1 cut(s) | 430 |
| CviAII | CATG | 5 cut(s) | 395, 731, 899, 956, 1161 |
| CviQI | GTAC | 1 cut(s) | 430 |
| DdeI | CTNAG | 2 cut(s) | 237, 288 |
| DpnI | GATC | 7 cut(s) | 165, 439, 484, 579, 882, 1067, 1071 |
| DpnII | GATC | 7 cut(s) | 163, 437, 482, 577, 880, 1065, 1069 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 926 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 926 |
| EaeI | YGGCCR | 1 cut(s) | 733 |
| Eam1104I | CTCTTC | 1 cut(s) | 65 |
| EarI | CTCTTC | 1 cut(s) | 65 |
| Eco57I | CTGAAG | 1 cut(s) | 1047 |
| Eco81I | CCTNAGG | 1 cut(s) | 237 |
| Eco88I | CYCGRG | 1 cut(s) | 1150 |
| EcoRII | CCWGG | 2 cut(s) | 478, 1233 |
| Esp3I | CGTCTC | 1 cut(s) | 40 |
| FaeI | CATG | 5 cut(s) | 398, 734, 902, 959, 1164 |
| FaqI | GGGAC | 1 cut(s) | 1160 |
| FatI | CATG | 5 cut(s) | 394, 730, 898, 955, 1160 |
| FauI | CCCGC | 1 cut(s) | 163 |
| FblI | GTMKAC | 2 cut(s) | 5, 1358 |
| Fnu4HI | GCNGC | 4 cut(s) | 82, 259, 1094, 1378 |
| FokI | GGATG | 3 cut(s) | 131, 1299, 1355 |
| Fsp4HI | GCNGC | 4 cut(s) | 82, 259, 1094, 1378 |
| FspBI | CTAG | 1 cut(s) | 99 |
| GlaI | GCGC | 1 cut(s) | 257 |
| GluI | GCNGC | 4 cut(s) | 82, 259, 1094, 1378 |
| HaeIII | GGCC | 1 cut(s) | 735 |
| HapII | CCGG | 2 cut(s) | 366, 1394 |
| HgaI | GACGC | 2 cut(s) | 73, 111 |
| HhaI | GCGC | 1 cut(s) | 258 |
| Hin1I | GRCGYC | 2 cut(s) | 216, 273 |
| Hin1II | CATG | 5 cut(s) | 398, 734, 902, 959, 1164 |
| Hin6I | GCGC | 1 cut(s) | 256 |
| HinP1I | GCGC | 1 cut(s) | 256 |
| HincII | GTYRAC | 2 cut(s) | 6, 1359 |
| HindII | GTYRAC | 2 cut(s) | 6, 1359 |
| HpaII | CCGG | 2 cut(s) | 366, 1394 |
| HphI | GGTGA | 7 cut(s) | 211, 224, 380, 412, 622, 1007, 1151 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 499, 1359 |
| Hpy188I | TCNGA | 4 cut(s) | 541, 706, 867, 1074 |
| Hpy188III | TCNNGA | 4 cut(s) | 110, 206, 1152, 1403 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 499, 1359 |
| Hpy99I | CGWCG | 2 cut(s) | 164, 278 |
| HpyAV | CCTTC | 8 cut(s) | 126, 341, 689, 824, 986, 1032, 1183, 1451 |
| HpyCH4III | ACNGT | 6 cut(s) | 46, 223, 572, 588, 796, 1328 |
| HpyCH4IV | ACGT | 3 cut(s) | 216, 273, 1278 |
| HpyCH4V | TGCA | 5 cut(s) | 81, 792, 1164, 1255, 1377 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 264, 1028, 1386 |
| HpyF3I | CTNAG | 2 cut(s) | 237, 288 |
| HpySE526I | ACGT | 3 cut(s) | 216, 273, 1278 |
| Hsp92I | GRCGYC | 2 cut(s) | 216, 273 |
| Hsp92II | CATG | 5 cut(s) | 398, 734, 902, 959, 1164 |
| HspAI | GCGC | 1 cut(s) | 256 |
| KspI | CCGCGG | 1 cut(s) | 262 |
| Kzo9I | GATC | 7 cut(s) | 163, 437, 482, 577, 880, 1065, 1069 |
| LguI | GCTCTTC | 1 cut(s) | 65 |
| LmnI | GCTCC | 1 cut(s) | 1443 |
| Lsp1109I | GCAGC | 3 cut(s) | 93, 1105, 1389 |
| LweI | GCATC | 4 cut(s) | 493, 1009, 1242, 1439 |
| MaeI | CTAG | 1 cut(s) | 99 |
| MaeII | ACGT | 3 cut(s) | 216, 273, 1278 |
| MaeIII | GTNAC | 8 cut(s) | 46, 212, 217, 659, 810, 894, 995, 1279 |
| MalI | GATC | 7 cut(s) | 165, 439, 484, 579, 882, 1067, 1071 |
| MboI | GATC | 7 cut(s) | 163, 437, 482, 577, 880, 1065, 1069 |
| MlsI | TGGCCA | 1 cut(s) | 735 |
| MluCI | AATT | 4 cut(s) | 550, 787, 1013, 1294 |
| MluNI | TGGCCA | 1 cut(s) | 735 |
| MlyI | GAGTC | 1 cut(s) | 1142 |
| MmeI | TCCRAC | 2 cut(s) | 622, 890 |
| Mox20I | TGGCCA | 1 cut(s) | 735 |
| MscI | TGGCCA | 1 cut(s) | 735 |
| MseI | TTAA | 5 cut(s) | 447, 549, 591, 933, 1456 |
| MslI | CAYNNNNRTG | 1 cut(s) | 210 |
| Msp20I | TGGCCA | 1 cut(s) | 735 |
| MspA1I | CMGCKG | 1 cut(s) | 261 |
| MspI | CCGG | 2 cut(s) | 366, 1394 |
| MspR9I | CCNGG | 4 cut(s) | 366, 480, 1235, 1395 |
| MvaI | CCWGG | 2 cut(s) | 480, 1235 |
| MvnI | CGCG | 4 cut(s) | 256, 261, 278, 1110 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 264, 1028, 1386 |
| NciI | CCSGG | 2 cut(s) | 366, 1395 |
| NdeII | GATC | 7 cut(s) | 163, 437, 482, 577, 880, 1065, 1069 |
| NlaIII | CATG | 5 cut(s) | 398, 734, 902, 959, 1164 |
| NlaIV | GGNNCC | 2 cut(s) | 1388, 1415 |
| NmuCI | GTSAC | 7 cut(s) | 46, 212, 217, 810, 894, 995, 1279 |
| NspI | RCATGY | 2 cut(s) | 398, 902 |
| OliI | CACNNNNGTG | 1 cut(s) | 210 |
| PciSI | GCTCTTC | 1 cut(s) | 65 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 204, 213 |
| PfoI | TCCNGGA | 1 cut(s) | 1233 |
| PkrI | GCNGC | 4 cut(s) | 83, 260, 1095, 1379 |
| PleI | GAGTC | 1 cut(s) | 1142 |
| PpsI | GAGTC | 1 cut(s) | 1142 |
| PsiI | TTATAA | 1 cut(s) | 786 |
| Psp6I | CCWGG | 2 cut(s) | 478, 1233 |
| PspGI | CCWGG | 2 cut(s) | 478, 1233 |
| PspN4I | GGNNCC | 2 cut(s) | 1388, 1415 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1383 |
| RsaI | GTAC | 1 cut(s) | 431 |
| RsaNI | GTAC | 1 cut(s) | 430 |
| RseI | CAYNNNNRTG | 1 cut(s) | 210 |
| SacII | CCGCGG | 1 cut(s) | 262 |
| SalI | GTCGAC | 2 cut(s) | 4, 1357 |
| SapI | GCTCTTC | 1 cut(s) | 65 |
| SaqAI | TTAA | 5 cut(s) | 447, 549, 591, 933, 1456 |
| SatI | GCNGC | 4 cut(s) | 82, 259, 1094, 1378 |
| Sau3AI | GATC | 7 cut(s) | 163, 437, 482, 577, 880, 1065, 1069 |
| SchI | GAGTC | 1 cut(s) | 1142 |
| ScrFI | CCNGG | 4 cut(s) | 366, 480, 1235, 1395 |
| SfaNI | GCATC | 4 cut(s) | 493, 1009, 1242, 1439 |
| SfcI | CTRYAG | 1 cut(s) | 597 |
| Sfr303I | CCGCGG | 1 cut(s) | 262 |
| SgrBI | CCGCGG | 1 cut(s) | 262 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 210 |
| SmlI | CTYRAG | 1 cut(s) | 849 |
| SmoI | CTYRAG | 1 cut(s) | 849 |
| Sse9I | AATT | 4 cut(s) | 550, 787, 1013, 1294 |
| SsiI | CCGC | 9 cut(s) | 138, 156, 259, 261, 278, 398, 966, 1110, 1300 |
| SspMI | CTAG | 1 cut(s) | 99 |
| StyD4I | CCNGG | 4 cut(s) | 364, 478, 1233, 1393 |
| TaaI | ACNGT | 6 cut(s) | 46, 223, 572, 588, 796, 1328 |
| TaiI | ACGT | 3 cut(s) | 219, 276, 1281 |
| TaqI | TCGA | 8 cut(s) | 5, 25, 111, 162, 198, 1068, 1203, 1358 |
| TasI | AATT | 4 cut(s) | 550, 787, 1013, 1294 |
| TatI | WGTACW | 1 cut(s) | 429 |
| TauI | GCSGC | 1 cut(s) | 261 |
| Tru1I | TTAA | 5 cut(s) | 447, 549, 591, 933, 1456 |
| Tru9I | TTAA | 5 cut(s) | 447, 549, 591, 933, 1456 |
| TscAI | CASTG | 3 cut(s) | 49, 943, 1388 |
| TseFI | GTSAC | 7 cut(s) | 46, 212, 217, 810, 894, 995, 1279 |
| TseI | GCWGC | 3 cut(s) | 81, 1093, 1377 |
| Tsp45I | GTSAC | 7 cut(s) | 46, 212, 217, 810, 894, 995, 1279 |
| TspDTI | ATGAA | 5 cut(s) | 52, 668, 719, 944, 1238 |
| TspGWI | ACGGA | 4 cut(s) | 338, 367, 1323, 1355 |
| TspRI | CASTG | 3 cut(s) | 49, 943, 1388 |
| XapI | RAATTY | 1 cut(s) | 1013 |
| XceI | RCATGY | 2 cut(s) | 398, 902 |
| XmiI | GTMKAC | 2 cut(s) | 5, 1358 |
| XspI | CTAG | 1 cut(s) | 99 |
| ZraI | GACGTC | 2 cut(s) | 217, 274 |