Prupe.1G068600_v2.0.a1

Protein trichome birefringence-like 5

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
4884616 .. 4890361
5746 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G068600.1

Sequence Viewer

Length: 1485 bp
ATGGCAGTGGCTTCCAATTCCCCAACCCAGAAGAAGCGTTACACTGTCACCGCTCTTGTCTTCATCACCCTCTTTCTCTTCACCATCTTCCTCTTCAGCAAACGAGCTCTTGAGCCTTCTCTCTCTCTCTACAAAAATCCCTTTCCCCAAATCCCCTCTTCTTCTTCTTCTTCCTCGCTTCCAAATTCCAACCTCTCCCTGCCCAACTCCACATCTACAGAAAGAGTAGCAGTGGACCCACCTTCTTCTTCAGGCAGTAATTACCAACTGCCCTTGCTCCATTCTATCTCTGCACAGCCATTGGACCCACCAACCCAACAACCCGTTTCATCCAATTCACAAACTGAAGAGCCAACGGAGTTCAATGATGAAACTGAGCAAGACCCAGGTCGTGAAAATGAAACCCCATTTGGTGAAATGGGTGAAACTGGGTGTGATTTGTATCTGGGGACTTGGGTGAAGGATGAGCATTACCCGCTTTATAAACCCAGTTCTTGCCCTTATGTTGATGAAGCTTTTGATTGCCAAAGCAATGGGAGGAGTGACTCTGAGTATCTCAAATGGCGGTGGAAGCCTGAGGGATGTGATCTTCCAAGGTTTAATGCAACAGACTTCTTGGTGAGACTACGTGGTAAAAGATTGATGCTGGTAGGAGATTCCATGAACCGGAACCAGTTCGAGTCAATCCTTTGCCTCCTCCGCGAAGGCTTGCATAATAAGAGCAGAATGCATGAAATTCACGGCCACAAAATAACTAAGGGGAGAGGCTACTATGTTTTTAAATTCGAGGACTATGACTGTACAGTGGAATTTGTGAGGTCACATTTCCTCGTAAAGGAAGGAGTCCGCCTTAATGGTCAAGGGAGTTCAAATCCAACTCTTTCGATAGATCAAATTGATAAGACAGCTAAACGTTGGAAAAGAGCTGACATTCTTGTCTTTAATACTGGCCATTGGTGGACTCATGGAAAGACTGCTCGTGGGAAAAACTACTATAAAGAGGGAGATTATCTTTATCCAAAGTTTGATGCATCGGAGGCCTATAGAAGGGCTCTGAGGACCTGGGCTAGCTGGATTGATCGTAATGTTAATCCATCAAAGCAGTTGATCTTCTATCGTGGGTACTCTTCTGCCCATTTCAGAGGAGGAGATTGGGATTCAGGTGGATCATGCAATGGGGAAAAAGAACCAGTCTTAAGTGGGGCCATACTTGATAACTATCCTTTGAAAATGAAGATAGTGGATGAAGTAATCAAAGAAATGCGGGTTCCTGTGAAACTTTTGAATGTGACAAGGTTGACCAATTTCCGCAAGGATGGCCATCCATCAATCTACGGAAAGAATGCAACTGCTGGCAAAAAAGTTTCCACAAGGAAGCAAGACTGTAGCCATTGGTGCCTTCCTGGGGTCCCTGATGCCTGGAATGAGCTTATCTATGCCACCTTGGTTATTCAGCAGACCAAGTCAAAGAGTAAAAATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

495

Amino Acids

56.13

Weight (kDa)

8.89

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
AasI GACNNNNNNGTC 1 cut(s) 935
AccB1I GGYRCC 1 cut(s) 1395
AccBSI CCGCTC 1 cut(s) 53
AccII CGCG 1 cut(s) 702
AciI CCGC 7 cut(s) 51, 476, 565, 700, 847, 1264, 1309
AclI AACGTT 1 cut(s) 913
AclWI GGATC 1 cut(s) 1174
AcoI YGGCCR 3 cut(s) 742, 949, 1318
AcsI RAATTY 5 cut(s) 184, 735, 782, 809, 1477
AcuI CTGAAG 3 cut(s) 79, 234, 366
AfaI GTAC 2 cut(s) 802, 1124
AfiI CCNNNNNNNGG 4 cut(s) 666, 835, 1047, 1405
AflII CTTAAG 1 cut(s) 1195
AgsI TTSAA 4 cut(s) 364, 870, 1228, 1285
AjnI CCWGG 4 cut(s) 385, 1061, 1402, 1418
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 6 cut(s) 107, 515, 908, 926, 1071, 1429
AluI AGCT 6 cut(s) 107, 515, 908, 926, 1071, 1429
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 616
AlwI GGATC 1 cut(s) 1174
AoxI GGCC 5 cut(s) 742, 949, 1038, 1203, 1318
ApoI RAATTY 5 cut(s) 184, 735, 782, 809, 1477
Asp700I GAANNNNTTC 1 cut(s) 674
AspS9I GGNCC 5 cut(s) 235, 304, 1059, 1203, 1408
AsuHPI GGTGA 7 cut(s) 40, 58, 73, 425, 434, 469, 631
AsuNHI GCTAGC 1 cut(s) 1067
AvaII GGWCC 4 cut(s) 235, 304, 1059, 1408
AxyI CCTNAGG 1 cut(s) 576
BalI TGGCCA 2 cut(s) 951, 1320
BanI GGYRCC 1 cut(s) 1395
BanII GRGCYC 2 cut(s) 109, 1054
BarI GAAGNNNNNNTAC 2 cut(s) 23, 55
BauI CACGAG 1 cut(s) 978
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 109
BccI CCATC 5 cut(s) 92, 1102, 1310, 1329, 1333
BceAI ACGGC 1 cut(s) 757
BciT130I CCWGG 4 cut(s) 387, 1063, 1404, 1420
BcoDI GTCTC 1 cut(s) 616
BfaI CTAG 1 cut(s) 1068
BfmI CTRYAG 3 cut(s) 216, 1042, 1384
BfrI CTTAAG 1 cut(s) 1195
Bme1390I CCNGG 4 cut(s) 387, 1063, 1404, 1420
Bme18I GGWCC 4 cut(s) 235, 304, 1059, 1408
BmgT120I GGNCC 5 cut(s) 235, 304, 1059, 1203, 1408
BmiI GGNNCC 8 cut(s) 237, 306, 671, 1204, 1269, 1397, 1409, 1410
BmrFI CCNGG 4 cut(s) 387, 1063, 1404, 1420
BmrI ACTGGG 2 cut(s) 438, 483
BmsI GCATC 4 cut(s) 633, 1018, 1040, 1405
BmtI GCTAGC 1 cut(s) 1071
BmuI ACTGGG 2 cut(s) 438, 483
BoxI GACNNNNGTC 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 629
BsaBI GATNNNNATC 3 cut(s) 441, 1218, 1320
BsaJI CCNNGG 5 cut(s) 385, 593, 1062, 1403, 1443
BsaWI WCCGGW 1 cut(s) 666
Bsc4I CCNNNNNNNGG 4 cut(s) 666, 835, 1047, 1405
Bse1I ACTGG 5 cut(s) 433, 489, 673, 952, 1190
Bse21I CCTNAGG 1 cut(s) 576
Bse3DI GCAATG 2 cut(s) 538, 1180
Bse8I GATNNNNATC 3 cut(s) 441, 1218, 1320
BseBI CCWGG 4 cut(s) 387, 1063, 1404, 1420
BseDI CCNNGG 5 cut(s) 385, 593, 1062, 1403, 1443
BseGI GGATG 6 cut(s) 329, 469, 587, 1249, 1321, 1321
BseJI GATNNNNATC 3 cut(s) 441, 1218, 1320
BseLI CCNNNNNNNGG 4 cut(s) 666, 835, 1047, 1405
BseMI GCAATG 2 cut(s) 538, 1180
BseMII CTCAG 4 cut(s) 366, 540, 567, 1046
BseNI ACTGG 5 cut(s) 433, 489, 673, 952, 1190
BseRI GAGGAG 4 cut(s) 553, 686, 1158, 1161
BsgI GTGCAG 1 cut(s) 276
Bsh1236I CGCG 1 cut(s) 702
BshFI GGCC 5 cut(s) 744, 951, 1040, 1205, 1320
BshNI GGYRCC 1 cut(s) 1395
BsiHKAI GWGCWC 1 cut(s) 109
BsiSI CCGG 1 cut(s) 667
BslFI GGGAC 2 cut(s) 463, 1394
BslI CCNNNNNNNGG 4 cut(s) 666, 835, 1047, 1405
BsmAI GTCTC 1 cut(s) 616
BsmFI GGGAC 2 cut(s) 463, 1394
BsmI GAATGC 2 cut(s) 732, 1348
BsnI GGCC 5 cut(s) 744, 951, 1040, 1205, 1320
Bsp1286I GDGCHC 2 cut(s) 109, 1054
Bsp1407I TGTACA 1 cut(s) 800
Bsp143I GATC 5 cut(s) 586, 889, 1078, 1107, 1166
BspACI CCGC 7 cut(s) 51, 476, 565, 700, 847, 1264, 1309
BspANI GGCC 5 cut(s) 744, 951, 1040, 1205, 1320
BspCNI CTCAG 4 cut(s) 367, 541, 568, 1047
BspFNI CGCG 1 cut(s) 702
BspLI GGNNCC 8 cut(s) 237, 306, 671, 1204, 1269, 1397, 1409, 1410
BspOI GCTAGC 1 cut(s) 1071
BspPI GGATC 1 cut(s) 1174
BspQI GCTCTTC 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 1395
BspTI CTTAAG 1 cut(s) 1195
BsrBI CCGCTC 1 cut(s) 53
BsrDI GCAATG 2 cut(s) 538, 1180
BsrGI TGTACA 1 cut(s) 800
BsrI ACTGG 5 cut(s) 433, 489, 673, 952, 1190
BssECI CCNNGG 5 cut(s) 385, 593, 1062, 1403, 1443
BssMI GATC 5 cut(s) 586, 889, 1078, 1107, 1166
BssSI CACGAG 1 cut(s) 978
BssT1I CCWWGG 2 cut(s) 593, 1443
Bst2BI CACGAG 1 cut(s) 978
Bst2UI CCWGG 4 cut(s) 387, 1063, 1404, 1420
Bst4CI ACNGT 4 cut(s) 46, 800, 805, 1385
Bst6I CTCTTC 5 cut(s) 83, 98, 163, 342, 1132
BstAFI CTTAAG 1 cut(s) 1195
BstAUI TGTACA 1 cut(s) 800
BstBAI YACGTR 1 cut(s) 629
BstC8I GCNNGC 3 cut(s) 710, 1069, 1354
BstDEI CTNAG 5 cut(s) 375, 549, 576, 756, 1055
BstENI CCTNNNNNAGG 2 cut(s) 833, 1045
BstF5I GGATG 6 cut(s) 329, 469, 587, 1249, 1321, 1321
BstFNI CGCG 1 cut(s) 702
BstKTI GATC 5 cut(s) 589, 892, 1081, 1110, 1169
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 5 cut(s) 586, 889, 1078, 1107, 1166
BstMWI GCNNNNNNNGC 6 cut(s) 475, 571, 699, 1037, 1317, 1395
BstNI CCWGG 4 cut(s) 387, 1063, 1404, 1420
BstPAI GACNNNNGTC 1 cut(s) 387
BstSCI CCNGG 4 cut(s) 385, 1061, 1402, 1418
BstSFI CTRYAG 3 cut(s) 216, 1042, 1384
BstUI CGCG 1 cut(s) 702
BstV2I GAAGAC 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 533
Bsu36I CCTNAGG 1 cut(s) 576
BsuRI GGCC 5 cut(s) 744, 951, 1040, 1205, 1320
BtsCI GGATG 6 cut(s) 329, 469, 587, 1249, 1321, 1321
BtsI GCAGTG 2 cut(s) 12, 237
BtsIMutI CAGTG 4 cut(s) 12, 42, 237, 810
Cac8I GCNNGC 3 cut(s) 710, 1069, 1354
Cfr13I GGNCC 5 cut(s) 235, 304, 1059, 1203, 1408
Csp6I GTAC 2 cut(s) 801, 1123
CviAII CATG 4 cut(s) 661, 731, 965, 1170
CviQI GTAC 2 cut(s) 801, 1123
DdeI CTNAG 5 cut(s) 375, 549, 576, 756, 1055
DpnI GATC 5 cut(s) 588, 891, 1080, 1109, 1168
DpnII GATC 5 cut(s) 586, 889, 1078, 1107, 1166
DraI TTTAAA 1 cut(s) 781
DrdI GACNNNNNNGTC 1 cut(s) 935
DseDI GACNNNNNNGTC 1 cut(s) 935
EaeI YGGCCR 3 cut(s) 742, 949, 1318
Eam1104I CTCTTC 5 cut(s) 83, 98, 163, 342, 1132
EarI CTCTTC 5 cut(s) 83, 98, 163, 342, 1132
EciI GGCGGA 1 cut(s) 836
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 593, 1443
Eco147I AGGCCT 1 cut(s) 1040
Eco24I GRGCYC 2 cut(s) 109, 1054
Eco47I GGWCC 4 cut(s) 235, 304, 1059, 1408
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 3 cut(s) 79, 234, 366
Eco81I CCTNAGG 1 cut(s) 576
EcoICRI GAGCTC 1 cut(s) 107
EcoNI CCTNNNNNAGG 2 cut(s) 833, 1045
EcoO109I RGGNCCY 2 cut(s) 1059, 1408
EcoRII CCWGG 4 cut(s) 385, 1061, 1402, 1418
EcoT14I CCWWGG 2 cut(s) 593, 1443
EcoT22I ATGCAT 2 cut(s) 732, 1033
EcoT38I GRGCYC 2 cut(s) 109, 1054
ErhI CCWWGG 2 cut(s) 593, 1443
FaeI CATG 4 cut(s) 664, 734, 968, 1173
FaqI GGGAC 2 cut(s) 463, 1394
FatI CATG 4 cut(s) 660, 730, 964, 1169
FauI CCCGC 2 cut(s) 483, 1257
FokI GGATG 6 cut(s) 316, 476, 594, 1256, 1308, 1328
FriOI GRGCYC 2 cut(s) 109, 1054
FspBI CTAG 1 cut(s) 1068
HaeIII GGCC 5 cut(s) 744, 951, 1040, 1205, 1320
HapII CCGG 1 cut(s) 667
Hin1II CATG 4 cut(s) 664, 734, 968, 1173
HincII GTYRAC 1 cut(s) 1299
HindII GTYRAC 1 cut(s) 1299
HindIII AAGCTT 1 cut(s) 513
HinfI GANTC 6 cut(s) 545, 656, 680, 843, 961, 1157
HpaII CCGG 1 cut(s) 667
HphI GGTGA 7 cut(s) 40, 58, 73, 425, 434, 469, 631
Hpy166II GTNNAC 3 cut(s) 235, 960, 1299
Hpy188I TCNGA 4 cut(s) 550, 1036, 1056, 1142
Hpy188III TCNNGA 2 cut(s) 110, 392
Hpy8I GTNNAC 3 cut(s) 235, 960, 1299
HpyAV CCTTC 7 cut(s) 126, 252, 454, 698, 833, 1041, 1409
HpyCH4III ACNGT 4 cut(s) 46, 800, 805, 1385
HpyCH4IV ACGT 2 cut(s) 628, 913
HpyCH4V TGCA 7 cut(s) 293, 605, 712, 730, 1031, 1173, 1346
HpyF10VI GCNNNNNNNGC 6 cut(s) 475, 571, 699, 1037, 1317, 1395
HpyF3I CTNAG 5 cut(s) 375, 549, 576, 756, 1055
HpySE526I ACGT 2 cut(s) 628, 913
Hsp92II CATG 4 cut(s) 664, 734, 968, 1173
KflI GGGWCCC 1 cut(s) 1408
Kzo9I GATC 5 cut(s) 586, 889, 1078, 1107, 1166
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 282
LweI GCATC 4 cut(s) 633, 1018, 1040, 1405
MaeI CTAG 1 cut(s) 1068
MaeII ACGT 2 cut(s) 628, 913
MaeIII GTNAC 5 cut(s) 38, 46, 542, 819, 1288
MalI GATC 5 cut(s) 588, 891, 1080, 1109, 1168
MbiI CCGCTC 1 cut(s) 53
MboI GATC 5 cut(s) 586, 889, 1078, 1107, 1166
MhlI GDGCHC 2 cut(s) 109, 1054
MlsI TGGCCA 2 cut(s) 951, 1320
MluNI TGGCCA 2 cut(s) 951, 1320
MlyI GAGTC 4 cut(s) 539, 689, 852, 955
MmeI TCCRAC 3 cut(s) 213, 896, 899
Mox20I TGGCCA 2 cut(s) 951, 1320
Mph1103I ATGCAT 2 cut(s) 732, 1033
MroXI GAANNNNTTC 1 cut(s) 674
MscI TGGCCA 2 cut(s) 951, 1320
MseI TTAA 6 cut(s) 600, 780, 852, 942, 1089, 1196
Msp20I TGGCCA 2 cut(s) 951, 1320
MspCI CTTAAG 1 cut(s) 1195
MspI CCGG 1 cut(s) 667
MspR9I CCNGG 4 cut(s) 387, 1063, 1404, 1420
Mva1269I GAATGC 2 cut(s) 732, 1348
MvaI CCWGG 4 cut(s) 387, 1063, 1404, 1420
MvnI CGCG 1 cut(s) 702
MwoI GCNNNNNNNGC 6 cut(s) 475, 571, 699, 1037, 1317, 1395
NdeII GATC 5 cut(s) 586, 889, 1078, 1107, 1166
NheI GCTAGC 1 cut(s) 1067
NlaIII CATG 4 cut(s) 664, 734, 968, 1173
NlaIV GGNNCC 8 cut(s) 237, 306, 671, 1204, 1269, 1397, 1409, 1410
NmuCI GTSAC 4 cut(s) 46, 542, 819, 1288
NsiI ATGCAT 2 cut(s) 732, 1033
PceI AGGCCT 1 cut(s) 1040
PciSI GCTCTTC 1 cut(s) 342
PctI GAATGC 2 cut(s) 732, 1348
PdmI GAANNNNTTC 1 cut(s) 674
PfeI GAWTC 2 cut(s) 656, 1157
PflFI GACNNNGTC 1 cut(s) 1462
PleI GAGTC 4 cut(s) 539, 688, 851, 955
PpsI GAGTC 4 cut(s) 539, 688, 851, 955
Ppu21I YACGTR 1 cut(s) 629
PpuMI RGGWCCY 2 cut(s) 1059, 1408
PshAI GACNNNNGTC 1 cut(s) 387
PsiI TTATAA 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 109
Psp1406I AACGTT 1 cut(s) 913
Psp5II RGGWCCY 2 cut(s) 1059, 1408
Psp6I CCWGG 4 cut(s) 385, 1061, 1402, 1418
PspGI CCWGG 4 cut(s) 385, 1061, 1402, 1418
PspN4I GGNNCC 8 cut(s) 237, 306, 671, 1204, 1269, 1397, 1409, 1410
PspPI GGNCC 5 cut(s) 235, 304, 1059, 1203, 1408
PspPPI RGGWCCY 2 cut(s) 1059, 1408
PsyI GACNNNGTC 1 cut(s) 1462
RsaI GTAC 2 cut(s) 802, 1124
RsaNI GTAC 2 cut(s) 801, 1123
SacI GAGCTC 1 cut(s) 109
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 6 cut(s) 600, 780, 852, 942, 1089, 1196
Sau3AI GATC 5 cut(s) 586, 889, 1078, 1107, 1166
Sau96I GGNCC 5 cut(s) 235, 304, 1059, 1203, 1408
SchI GAGTC 4 cut(s) 539, 689, 852, 955
ScrFI CCNGG 4 cut(s) 387, 1063, 1404, 1420
SduI GDGCHC 2 cut(s) 109, 1054
SfaNI GCATC 4 cut(s) 633, 1018, 1040, 1405
SfcI CTRYAG 3 cut(s) 216, 1042, 1384
SinI GGWCC 4 cut(s) 235, 304, 1059, 1408
SmlI CTYRAG 2 cut(s) 110, 1195
SmoI CTYRAG 2 cut(s) 110, 1195
SseBI AGGCCT 1 cut(s) 1040
SsiI CCGC 7 cut(s) 51, 476, 565, 700, 847, 1264, 1309
SspMI CTAG 1 cut(s) 1068
SstI GAGCTC 1 cut(s) 109
StuI AGGCCT 1 cut(s) 1040
StyD4I CCNGG 4 cut(s) 385, 1061, 1402, 1418
StyI CCWWGG 2 cut(s) 593, 1443
TaaI ACNGT 4 cut(s) 46, 800, 805, 1385
TaiI ACGT 2 cut(s) 631, 916
TaqI TCGA 3 cut(s) 678, 786, 884
TatI WGTACW 1 cut(s) 800
TfiI GAWTC 2 cut(s) 656, 1157
Tru1I TTAA 6 cut(s) 600, 780, 852, 942, 1089, 1196
Tru9I TTAA 6 cut(s) 600, 780, 852, 942, 1089, 1196
TscAI CASTG 4 cut(s) 12, 49, 237, 810
TseFI GTSAC 4 cut(s) 46, 542, 819, 1288
Tsp45I GTSAC 4 cut(s) 46, 542, 819, 1288
TspGWI ACGGA 2 cut(s) 371, 1350
TspRI CASTG 4 cut(s) 12, 49, 237, 810
Tth111I GACNNNGTC 1 cut(s) 1462
Vha464I CTTAAG 1 cut(s) 1195
VpaK11BI GGWCC 4 cut(s) 235, 304, 1059, 1408
XagI CCTNNNNNAGG 2 cut(s) 833, 1045
XapI RAATTY 5 cut(s) 184, 735, 782, 809, 1477
XmnI GAANNNNTTC 1 cut(s) 674
XspI CTAG 1 cut(s) 1068
Zsp2I ATGCAT 2 cut(s) 732, 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.