Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010050

Physical Location & Seq

Genomic Coordinates Reverse (-)

7243679 .. 7246856

Gene Structure 3178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGAACCAAAATTGAATACTCCATCAACATATTAGGAGCCTCACAAAGTAGCAACAGCTTAGCTGTTCATAGAGTGGATGACTGGGACTATTTTCAGAAAGTTGGGCTGAAGCAAAAGTATCAGAAAACTAGATTTGAGGACAATCTTCGCTACTCAGTGGACAGAATGCTCGATAAGCACAACATGGATACCATCAGAAAGACAATGCAGATGCATGAAGACACCTTTAGGCACCAGATATGTGAGCTCCACCGGCTGTACAGTGTACAAAAGATGCTAATGGATGAACTGAAACAAGAGATAAATCAAAATAGAATTTGGGGTTGCATGACTAGTAATGCAGATCACATTCACATTCAGCAGTCTCAGTTGTTTAACCAGCAGCACGCGACAGCTCAAACTTCATCCGGCTATAATATCCATCTCCATAGGTTGAGAGAAGATCCAAGCTCTAGAGAGCGAAGTGGAAGTTGCTCAGGAGAGTACACCATGAAAATTTCCAGGGGTTTTGATCTCGAAAGGCCAGCTGCCGAGGAAGACATCTCAACAGGAGTTAGTACTATTGATCAAGACCAGACGGCGCCAAGCTCTAACATGGCATTGATCAAAAGTAATAACATGAGGAGCATGGATGTCTATGACGAAGATAGTGAAGAAGTGGAGCTGACATTAAGCATTGGAAGCAGCAAAAGCAAGAAAAGATCCAAATCTAACCAGCTGAGGCCTCATTTAGGGTGTTCAGAGCTGGTGATAAACAAAGAAAAGGTACTCGACTCACCTACCTCGTTAAAATCAGATAGAGGAGATTGCAGTGATCCCACAACTCCCATGAGCAGCTCCAGTGCAACAGTTGACCAGGAAAGAAAGCAGCCACATTGGCTTTTCCATGGTTTAAAGCTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

34.65

Weight (kDa)

6.67

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57340 AT5G57340
fragaria_vesca	FvH4_4g07760 FvH4_4g07760
malus_domestica	MD13G1247000.v1.1 MD16G1253900.v1.1
prunus_persica	Prupe.1G081700_v2.0.a1 Prupe.1G081700_v2.0.a1 Prupe.1G081700_v2.0.a1 Prupe.1G081700_v2.0.a1
pyrus_communis	pycom13g21790 pycom16g21510
rosa_chinensis	RchiOBHm_Chr4g0400841
rosa_laevigata	RLG00000009174
rosa_roxburghii	Rroxscaffold_5G00345690
rosa_rugosa	Rorug04G0026100
rosa_samantha	Rh4AG104200 Rh4BG099400 Rh4CG112500 Rh4DG096100
rosa_wichuraiana	Rw4G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	234, 583
AccII	CGCG	1 cut(s)	392
AclWI	GGATC	3 cut(s)	440, 699, 812
AcsI	RAATTY	2 cut(s)	318, 498
AcuI	CTGAAG	1 cut(s)	131
AcyI	GRCGYC	1 cut(s)	584
AfaI	GTAC	5 cut(s)	263, 270, 488, 562, 771
AfiI	CCNNNNNNNGG	1 cut(s)	734
AgsI	TTSAA	1 cut(s)	17
AhlI	ACTAGT	1 cut(s)	335
AjnI	CCWGG	2 cut(s)	503, 858
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	3 cut(s)	440, 699, 812
AoxI	GGCC	2 cut(s)	524, 725
ApeKI	GCWGC	5 cut(s)	385, 530, 687, 837, 871
ApoI	RAATTY	2 cut(s)	318, 498
AspLEI	GCGC	1 cut(s)	586
AsuHPI	GGTGA	2 cut(s)	763, 771
BanI	GGYRCC	2 cut(s)	234, 583
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	2 cut(s)	228, 546
Bbv12I	GWGCWC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	722
BbvI	GCAGC	5 cut(s)	397, 517, 699, 849, 883
BccI	CCATC	3 cut(s)	32, 203, 432
BceAI	ACGGC	1 cut(s)	597
BciT130I	CCWGG	2 cut(s)	505, 860
BciVI	GTATCC	1 cut(s)	184
BclI	TGATCA	2 cut(s)	568, 606
BcoDI	GTCTC	1 cut(s)	372
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	3 cut(s)	132, 336, 456
BfoI	RGCGCY	1 cut(s)	587
BfuI	GTATCC	1 cut(s)	184
BglI	GCCNNNNNGGC	1 cut(s)	880
BisI	GCNGC	5 cut(s)	386, 531, 688, 838, 872
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	5 cut(s)	387, 532, 689, 839, 873
BmcAI	AGTACT	1 cut(s)	562
Bme1390I	CCNGG	2 cut(s)	505, 860
BmiI	GGNNCC	4 cut(s)	7, 40, 236, 585
BmrFI	CCNGG	2 cut(s)	505, 860
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	2 cut(s)	204, 267
BmuI	ACTGGG	1 cut(s)	94
BpiI	GAAGAC	2 cut(s)	228, 546
BpmI	CTGGAG	1 cut(s)	826
Bpu10I	CCTNAGC	2 cut(s)	478, 722
Bpu1102I	GCTNAGC	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	709
BsaHI	GRCGYC	1 cut(s)	584
BsaJI	CCNNGG	3 cut(s)	504, 534, 889
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	2 cut(s)	89, 843
Bse8I	GATNNNNATC	1 cut(s)	709
BseBI	CCWGG	2 cut(s)	505, 860
BseDI	CCNNGG	3 cut(s)	504, 534, 889
BseGI	GGATG	4 cut(s)	85, 292, 407, 640
BseJI	GATNNNNATC	1 cut(s)	709
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMII	CTCAG	4 cut(s)	171, 383, 492, 713
BseNI	ACTGG	2 cut(s)	89, 843
BseRI	GAGGAG	2 cut(s)	640, 819
BseXI	GCAGC	5 cut(s)	397, 517, 699, 849, 883
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	2 cut(s)	526, 727
BshNI	GGYRCC	2 cut(s)	234, 583
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	256, 411
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	734
BsmAI	GTCTC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	526, 727
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp1407I	TGTACA	2 cut(s)	261, 268
Bsp143I	GATC	7 cut(s)	346, 445, 514, 568, 606, 704, 817
Bsp1720I	GCTNAGC	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	889
BspANI	GGCC	2 cut(s)	526, 727
BspCNI	CTCAG	4 cut(s)	170, 382, 491, 714
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	4 cut(s)	7, 40, 236, 585
BspPI	GGATC	3 cut(s)	440, 699, 812
BspT107I	GGYRCC	2 cut(s)	234, 583
BsrFI	RCCGGY	1 cut(s)	255
BsrGI	TGTACA	2 cut(s)	261, 268
BsrI	ACTGG	2 cut(s)	89, 843
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	3 cut(s)	504, 534, 889
BssMI	GATC	7 cut(s)	346, 445, 514, 568, 606, 704, 817
BssNI	GRCGYC	1 cut(s)	584
BssT1I	CCWWGG	1 cut(s)	889
Bst2UI	CCWGG	2 cut(s)	505, 860
Bst4CI	ACNGT	2 cut(s)	266, 853
BstACI	GRCGYC	1 cut(s)	584
BstAUI	TGTACA	2 cut(s)	261, 268
BstC8I	GCNNGC	2 cut(s)	390, 528
BstDEI	CTNAG	5 cut(s)	61, 157, 369, 478, 722
BstDSI	CCRYGG	1 cut(s)	889
BstENI	CCTNNNNNAGG	1 cut(s)	732
BstF5I	GGATG	4 cut(s)	85, 292, 407, 640
BstFNI	CGCG	1 cut(s)	392
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	7 cut(s)	349, 448, 517, 571, 609, 707, 820
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	7 cut(s)	346, 445, 514, 568, 606, 704, 817
BstMWI	GCNNNNNNNGC	5 cut(s)	178, 256, 684, 693, 880
BstNI	CCWGG	2 cut(s)	505, 860
BstSCI	CCNGG	2 cut(s)	503, 858
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	5 cut(s)	397, 517, 699, 849, 883
BstV2I	GAAGAC	2 cut(s)	228, 546
BstX2I	RGATCY	2 cut(s)	445, 704
BstYI	RGATCY	2 cut(s)	445, 704
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	526, 727
BtgI	CCRYGG	1 cut(s)	889
BtsCI	GGATG	4 cut(s)	85, 292, 407, 640
BtsI	GCAGTG	1 cut(s)	820
BtsIMutI	CAGTG	4 cut(s)	165, 271, 820, 850
Cac8I	GCNNGC	2 cut(s)	390, 528
CfoI	GCGC	1 cut(s)	586
Cfr10I	RCCGGY	1 cut(s)	255
Csp6I	GTAC	5 cut(s)	262, 269, 487, 561, 770
CviAII	CATG	9 cut(s)	187, 218, 331, 493, 598, 622, 631, 832, 890
CviQI	GTAC	5 cut(s)	262, 269, 487, 561, 770
DdeI	CTNAG	5 cut(s)	61, 157, 369, 478, 722
DinI	GGCGCC	1 cut(s)	585
DpnI	GATC	7 cut(s)	348, 447, 516, 570, 608, 706, 819
DpnII	GATC	7 cut(s)	346, 445, 514, 568, 606, 704, 817
DraI	TTTAAA	1 cut(s)	897
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	889
Eco147I	AGGCCT	1 cut(s)	727
Eco24I	GRGCYC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	732
EcoRII	CCWGG	2 cut(s)	503, 858
EcoT14I	CCWWGG	1 cut(s)	889
EcoT22I	ATGCAT	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	252
EgeI	GGCGCC	1 cut(s)	585
EheI	GGCGCC	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	889
FaeI	CATG	9 cut(s)	190, 221, 334, 496, 601, 625, 634, 835, 893
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	9 cut(s)	186, 217, 330, 492, 597, 621, 630, 831, 889
FbaI	TGATCA	2 cut(s)	568, 606
Fnu4HI	GCNGC	5 cut(s)	386, 531, 688, 838, 872
FokI	GGATG	4 cut(s)	92, 299, 394, 647
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	5 cut(s)	386, 531, 688, 838, 872
FspBI	CTAG	3 cut(s)	132, 336, 456
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	5 cut(s)	386, 531, 688, 838, 872
GsuI	CTGGAG	1 cut(s)	826
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	2 cut(s)	526, 727
HapII	CCGG	2 cut(s)	256, 411
HhaI	GCGC	1 cut(s)	586
Hin1I	GRCGYC	1 cut(s)	584
Hin1II	CATG	9 cut(s)	190, 221, 334, 496, 601, 625, 634, 835, 893
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	1 cut(s)	776
HpaII	CCGG	2 cut(s)	256, 411
HphI	GGTGA	2 cut(s)	763, 771
Hpy166II	GTNNAC	4 cut(s)	163, 269, 489, 856
Hpy188I	TCNGA	5 cut(s)	99, 126, 200, 745, 799
Hpy188III	TCNNGA	4 cut(s)	456, 480, 518, 572
Hpy8I	GTNNAC	4 cut(s)	163, 269, 489, 856
HpyCH4III	ACNGT	2 cut(s)	266, 853
HpyCH4V	TGCA	6 cut(s)	211, 217, 330, 344, 813, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	178, 256, 684, 693, 880
HpyF3I	CTNAG	5 cut(s)	61, 157, 369, 478, 722
Hsp92I	GRCGYC	1 cut(s)	584
Hsp92II	CATG	9 cut(s)	190, 221, 334, 496, 601, 625, 634, 835, 893
HspAI	GCGC	1 cut(s)	584
KasI	GGCGCC	1 cut(s)	583
Ksp22I	TGATCA	2 cut(s)	568, 606
Kzo9I	GATC	7 cut(s)	346, 445, 514, 568, 606, 704, 817
LmnI	GCTCC	5 cut(s)	38, 255, 627, 664, 845
Lsp1109I	GCAGC	5 cut(s)	397, 517, 699, 849, 883
LweI	GCATC	2 cut(s)	204, 267
MaeI	CTAG	3 cut(s)	132, 336, 456
MalI	GATC	7 cut(s)	348, 447, 516, 570, 608, 706, 819
MboI	GATC	7 cut(s)	346, 445, 514, 568, 606, 704, 817
MboII	GAAGA	6 cut(s)	140, 233, 455, 551, 659, 668
MflI	RGATCY	2 cut(s)	445, 704
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	3 cut(s)	12, 318, 498
Mly113I	GGCGCC	1 cut(s)	584
MlyI	GAGTC	1 cut(s)	770
MnlI	CCTC	8 cut(s)	52, 133, 529, 618, 717, 738, 796, 797
Mph1103I	ATGCAT	1 cut(s)	219
MseI	TTAA	4 cut(s)	378, 674, 791, 896
MspA1I	CMGCKG	2 cut(s)	530, 721
MspI	CCGG	2 cut(s)	256, 411
MspR9I	CCNGG	2 cut(s)	505, 860
Mva1269I	GAATGC	1 cut(s)	174
MvaI	CCWGG	2 cut(s)	505, 860
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	5 cut(s)	178, 256, 684, 693, 880
NarI	GGCGCC	1 cut(s)	584
NcoI	CCATGG	1 cut(s)	889
NdeII	GATC	7 cut(s)	346, 445, 514, 568, 606, 704, 817
NlaIII	CATG	9 cut(s)	190, 221, 334, 496, 601, 625, 634, 835, 893
NlaIV	GGNNCC	4 cut(s)	7, 40, 236, 585
NmeAIII	GCCGAG	1 cut(s)	559
NsiI	ATGCAT	1 cut(s)	219
PceI	AGGCCT	1 cut(s)	727
PctI	GAATGC	1 cut(s)	174
PkrI	GCNGC	5 cut(s)	387, 532, 689, 839, 873
PleI	GAGTC	1 cut(s)	770
PluTI	GGCGCC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	770
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	503, 858
PspGI	CCWGG	2 cut(s)	503, 858
PspN4I	GGNNCC	4 cut(s)	7, 40, 236, 585
PsuI	RGATCY	2 cut(s)	445, 704
PvuII	CAGCTG	2 cut(s)	530, 721
RsaI	GTAC	5 cut(s)	263, 270, 488, 562, 771
RsaNI	GTAC	5 cut(s)	262, 269, 487, 561, 770
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	4 cut(s)	378, 674, 791, 896
SatI	GCNGC	5 cut(s)	386, 531, 688, 838, 872
Sau3AI	GATC	7 cut(s)	346, 445, 514, 568, 606, 704, 817
ScaI	AGTACT	1 cut(s)	562
SchI	GAGTC	1 cut(s)	770
ScrFI	CCNGG	2 cut(s)	505, 860
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	2 cut(s)	204, 267
SfoI	GGCGCC	1 cut(s)	585
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	3 cut(s)	12, 318, 498
SseBI	AGGCCT	1 cut(s)	727
SspDI	GGCGCC	1 cut(s)	583
SspMI	CTAG	3 cut(s)	132, 336, 456
SstI	GAGCTC	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	727
StyD4I	CCNGG	2 cut(s)	503, 858
StyI	CCWWGG	1 cut(s)	889
TaaI	ACNGT	2 cut(s)	266, 853
TaqI	TCGA	3 cut(s)	174, 519, 774
TasI	AATT	3 cut(s)	12, 318, 498
TatI	WGTACW	4 cut(s)	261, 268, 486, 560
Tru1I	TTAA	4 cut(s)	378, 674, 791, 896
Tru9I	TTAA	4 cut(s)	378, 674, 791, 896
TscAI	CASTG	4 cut(s)	165, 271, 820, 850
TseI	GCWGC	5 cut(s)	385, 530, 687, 837, 871
TspDTI	ATGAA	5 cut(s)	59, 234, 303, 396, 509
TspRI	CASTG	4 cut(s)	165, 271, 820, 850
XagI	CCTNNNNNAGG	1 cut(s)	732
XapI	RAATTY	2 cut(s)	318, 498
XbaI	TCTAGA	1 cut(s)	455
XspI	CTAG	3 cut(s)	132, 336, 456
ZrmI	AGTACT	1 cut(s)	562
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.