Prupe.1G081700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010050
Physical Location & Seq
Reverse (-)
6013936 .. 6017316
3381 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G081700.3

Sequence Viewer

Length: 882 bp
ATGGGAACCAAAATTGAATACGCCATCAATATATTAGGAACCTCAGAAAATAGCAGCAGCTTAACCGTGCATCGCGTGGATGACTGGGAGTATTTTCAGAAAAGTGGGCTGAAGGAGAAGTATAAGAAGGCTAGAACCGAGGACAAAATTCAGAACTCGATGGACAGGATGCTTGACAAGCACAACATAGATACCATAAAAAAGACAATGCAGATGCATGAAGATACCTTTAAACACCAGATTCAAGAGCTACACCGACTGTACAGTGTACAAAAGATGCTAATGGATGAACTGAAAAAAGAGATGAAACGAAACAGATTTCGGGGGCTGGTGACTAGTAGTGCAGATCACATTAACCATTCTCAGTTGATTAACTGGCAGAATTCAACAACTCAAGCTTCTTCTGGATATAATTTCCATCTTCAGAGGTTGAGAGATGATCCGATCTCTAGAGAGGGCAGTGGAAGTTGCTCCGGAGACACCCTGAGAATGTCAAGGGGATTTGACCTTGAAAGGCCTGCCGAGGAAGACATGTCAACAGGAGTCAGTACAATTGACCAAGAACAAGCAGGGCCAAGCTCTCACATGGCCTTCAAAAGTAAAAATATGAGTATAGCTGACTGTGATGAAGATAGTGAAGTGGAGCTGACATTAAGCATTGGAAGCAGCAAGAACAAGAAGAGATCAAAATCTTACCAGCCTCAGTTAGGATGTGCTGAGCTGATCCATAAAGAAAAGGAACTTGATTCGCCTGCCTCATTCAAATCAGATAGAGGAGGAGACTGCAGTGATCCCACAACTCCCATGAGCAGCTCTAGTGCAACATTTGACCAGGAAAGAAAGCAGCCACATTGGCTTTTCCATGGTTTAAAGCTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

33.44

Weight (kDa)

6.87

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 75
AccIII TCCGGA 1 cut(s) 473
AclWI GGATC 3 cut(s) 434, 718, 785
AcsI RAATTY 2 cut(s) 147, 382
AcuI CTGAAG 2 cut(s) 131, 407
AfaI GTAC 3 cut(s) 263, 270, 550
AfiI CCNNNNNNNGG 1 cut(s) 707
AflIII ACRYGT 1 cut(s) 531
AgsI TTSAA 6 cut(s) 17, 245, 387, 512, 595, 763
AhlI ACTAGT 1 cut(s) 335
AjnI CCWGG 1 cut(s) 831
AluBI AGCT 9 cut(s) 60, 250, 398, 579, 617, 646, 721, 813, 874
AluI AGCT 9 cut(s) 60, 250, 398, 579, 617, 646, 721, 813, 874
Alw26I GTCTC 2 cut(s) 471, 774
AlwI GGATC 3 cut(s) 434, 718, 785
Aor13HI TCCGGA 1 cut(s) 473
AoxI GGCC 3 cut(s) 515, 572, 588
ApeKI GCWGC 5 cut(s) 54, 57, 666, 810, 844
ApoI RAATTY 2 cut(s) 147, 382
AspS9I GGNCC 1 cut(s) 572
AsuHPI GGTGA 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 534
BbvI GCAGC 5 cut(s) 66, 69, 678, 822, 856
BccI CCATC 3 cut(s) 32, 154, 426
BciT130I CCWGG 1 cut(s) 833
BcoDI GTCTC 2 cut(s) 471, 774
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 4 cut(s) 132, 336, 450, 816
BfmI CTRYAG 1 cut(s) 784
BglI GCCNNNNNGGC 1 cut(s) 853
BisI GCNGC 5 cut(s) 55, 58, 667, 811, 845
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 5 cut(s) 56, 59, 668, 812, 846
Bme1390I CCNGG 1 cut(s) 833
BmgT120I GGNCC 1 cut(s) 572
BmiI GGNNCC 2 cut(s) 7, 40
BmrFI CCNGG 1 cut(s) 833
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 4 cut(s) 79, 159, 204, 267
BmuI ACTGGG 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 534
Bpu1102I GCTNAGC 1 cut(s) 717
BpuEI CTTGAG 1 cut(s) 378
BsaBI GATNNNNATC 1 cut(s) 688
BsaJI CCNNGG 3 cut(s) 138, 522, 862
BsaWI WCCGGW 1 cut(s) 473
Bsc4I CCNNNNNNNGG 1 cut(s) 707
Bse1I ACTGG 2 cut(s) 89, 380
Bse8I GATNNNNATC 1 cut(s) 688
BseAI TCCGGA 1 cut(s) 473
BseBI CCWGG 1 cut(s) 833
BseDI CCNNGG 3 cut(s) 138, 522, 862
BseGI GGATG 4 cut(s) 85, 174, 292, 716
BseJI GATNNNNATC 1 cut(s) 688
BseLI CCNNNNNNNGG 1 cut(s) 707
BseMII CTCAG 5 cut(s) 57, 377, 476, 708, 716
BseNI ACTGG 2 cut(s) 89, 380
BseRI GAGGAG 2 cut(s) 789, 792
BseXI GCAGC 5 cut(s) 66, 69, 678, 822, 856
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 517, 574, 590
BsiSI CCGG 1 cut(s) 474
BslI CCNNNNNNNGG 1 cut(s) 707
BsmAI GTCTC 2 cut(s) 471, 774
BsnI GGCC 3 cut(s) 517, 574, 590
Bsp13I TCCGGA 1 cut(s) 473
Bsp1407I TGTACA 2 cut(s) 261, 268
Bsp143I GATC 6 cut(s) 346, 439, 444, 683, 723, 790
Bsp1720I GCTNAGC 1 cut(s) 717
Bsp19I CCATGG 1 cut(s) 862
BspANI GGCC 3 cut(s) 517, 574, 590
BspCNI CTCAG 5 cut(s) 56, 376, 477, 709, 715
BspEI TCCGGA 1 cut(s) 473
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 7, 40
BspMAI CTGCAG 1 cut(s) 788
BspPI GGATC 3 cut(s) 434, 718, 785
BsrGI TGTACA 2 cut(s) 261, 268
BsrI ACTGG 2 cut(s) 89, 380
BssECI CCNNGG 3 cut(s) 138, 522, 862
BssMI GATC 6 cut(s) 346, 439, 444, 683, 723, 790
BssT1I CCWWGG 1 cut(s) 862
Bst2UI CCWGG 1 cut(s) 833
Bst4CI ACNGT 4 cut(s) 67, 261, 266, 623
Bst6I CTCTTC 1 cut(s) 674
BstAUI TGTACA 2 cut(s) 261, 268
BstC8I GCNNGC 2 cut(s) 519, 753
BstDEI CTNAG 5 cut(s) 43, 363, 485, 702, 717
BstDSI CCRYGG 1 cut(s) 862
BstENI CCTNNNNNAGG 1 cut(s) 705
BstF5I GGATG 4 cut(s) 85, 174, 292, 716
BstFNI CGCG 1 cut(s) 75
BstKTI GATC 6 cut(s) 349, 442, 447, 686, 726, 793
BstMAI GTCTC 2 cut(s) 471, 774
BstMBI GATC 6 cut(s) 346, 439, 444, 683, 723, 790
BstMWI GCNNNNNNNGC 3 cut(s) 178, 663, 853
BstNI CCWGG 1 cut(s) 833
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 1 cut(s) 831
BstSFI CTRYAG 1 cut(s) 784
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 5 cut(s) 66, 69, 678, 822, 856
BstV2I GAAGAC 1 cut(s) 534
BsuRI GGCC 3 cut(s) 517, 574, 590
BtgI CCRYGG 1 cut(s) 862
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 4 cut(s) 85, 174, 292, 716
BtsI GCAGTG 2 cut(s) 466, 793
BtsIMutI CAGTG 3 cut(s) 271, 466, 793
Cac8I GCNNGC 2 cut(s) 519, 753
Cfr13I GGNCC 1 cut(s) 572
Csp6I GTAC 3 cut(s) 262, 269, 549
CviAII CATG 5 cut(s) 218, 532, 586, 805, 863
CviQI GTAC 3 cut(s) 262, 269, 549
DdeI CTNAG 5 cut(s) 43, 363, 485, 702, 717
DpnI GATC 6 cut(s) 348, 441, 446, 685, 725, 792
DpnII GATC 6 cut(s) 346, 439, 444, 683, 723, 790
DraI TTTAAA 2 cut(s) 232, 870
Eam1104I CTCTTC 1 cut(s) 674
EarI CTCTTC 1 cut(s) 674
Eco130I CCWWGG 1 cut(s) 862
Eco147I AGGCCT 1 cut(s) 517
Eco57I CTGAAG 2 cut(s) 131, 407
EcoNI CCTNNNNNAGG 1 cut(s) 705
EcoRI GAATTC 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 831
EcoT14I CCWWGG 1 cut(s) 862
EcoT22I ATGCAT 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 862
FaeI CATG 5 cut(s) 221, 535, 589, 808, 866
FatI CATG 5 cut(s) 217, 531, 585, 804, 862
Fnu4HI GCNGC 5 cut(s) 55, 58, 667, 811, 845
FokI GGATG 4 cut(s) 92, 181, 299, 723
Fsp4HI GCNGC 5 cut(s) 55, 58, 667, 811, 845
FspBI CTAG 4 cut(s) 132, 336, 450, 816
GluI GCNGC 5 cut(s) 55, 58, 667, 811, 845
HaeIII GGCC 3 cut(s) 517, 574, 590
HapII CCGG 1 cut(s) 474
Hin1II CATG 5 cut(s) 221, 535, 589, 808, 866
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 3 cut(s) 241, 543, 746
HpaII CCGG 1 cut(s) 474
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 2 cut(s) 269, 537
Hpy188I TCNGA 6 cut(s) 46, 99, 153, 426, 444, 769
Hpy188III TCNNGA 4 cut(s) 245, 405, 450, 474
Hpy8I GTNNAC 2 cut(s) 269, 537
HpyAV CCTTC 3 cut(s) 106, 121, 601
HpyCH4III ACNGT 4 cut(s) 67, 261, 266, 623
HpyCH4V TGCA 6 cut(s) 70, 211, 217, 344, 786, 821
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 663, 853
HpyF3I CTNAG 5 cut(s) 43, 363, 485, 702, 717
Hsp92II CATG 5 cut(s) 221, 535, 589, 808, 866
Kpn2I TCCGGA 1 cut(s) 473
Kzo9I GATC 6 cut(s) 346, 439, 444, 683, 723, 790
LmnI GCTCC 2 cut(s) 476, 643
Lsp1109I GCAGC 5 cut(s) 66, 69, 678, 822, 856
LweI GCATC 4 cut(s) 79, 159, 204, 267
MaeI CTAG 4 cut(s) 132, 336, 450, 816
MaeIII GTNAC 1 cut(s) 331
MalI GATC 6 cut(s) 348, 441, 446, 685, 725, 792
MboI GATC 6 cut(s) 346, 439, 444, 683, 723, 790
MboII GAAGA 6 cut(s) 233, 393, 413, 539, 641, 691
MfeI CAATTG 1 cut(s) 552
MluCI AATT 5 cut(s) 12, 147, 382, 412, 552
MlyI GAGTC 1 cut(s) 552
MnlI CCTC 9 cut(s) 52, 133, 420, 448, 517, 711, 766, 767, 770
Mph1103I ATGCAT 1 cut(s) 219
MroI TCCGGA 1 cut(s) 473
MseI TTAA 6 cut(s) 62, 231, 354, 372, 653, 869
MspI CCGG 1 cut(s) 474
MspR9I CCNGG 1 cut(s) 833
MunI CAATTG 1 cut(s) 552
MvaI CCWGG 1 cut(s) 833
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 178, 663, 853
NcoI CCATGG 1 cut(s) 862
NdeII GATC 6 cut(s) 346, 439, 444, 683, 723, 790
NlaIII CATG 5 cut(s) 221, 535, 589, 808, 866
NlaIV GGNNCC 2 cut(s) 7, 40
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 1 cut(s) 331
NsiI ATGCAT 1 cut(s) 219
NspI RCATGY 1 cut(s) 535
PceI AGGCCT 1 cut(s) 517
PciI ACATGT 1 cut(s) 531
PfeI GAWTC 2 cut(s) 241, 746
PkrI GCNGC 5 cut(s) 56, 59, 668, 812, 846
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
PscI ACATGT 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 831
PspGI CCWGG 1 cut(s) 831
PspN4I GGNNCC 2 cut(s) 7, 40
PspPI GGNCC 1 cut(s) 572
PstI CTGCAG 1 cut(s) 788
RsaI GTAC 3 cut(s) 263, 270, 550
RsaNI GTAC 3 cut(s) 262, 269, 549
SaqAI TTAA 6 cut(s) 62, 231, 354, 372, 653, 869
SatI GCNGC 5 cut(s) 55, 58, 667, 811, 845
Sau3AI GATC 6 cut(s) 346, 439, 444, 683, 723, 790
Sau96I GGNCC 1 cut(s) 572
SchI GAGTC 1 cut(s) 552
ScrFI CCNGG 1 cut(s) 833
SfaNI GCATC 4 cut(s) 79, 159, 204, 267
SfcI CTRYAG 1 cut(s) 784
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 5 cut(s) 12, 147, 382, 412, 552
SseBI AGGCCT 1 cut(s) 517
SspMI CTAG 4 cut(s) 132, 336, 450, 816
StuI AGGCCT 1 cut(s) 517
StyD4I CCNGG 1 cut(s) 831
StyI CCWWGG 1 cut(s) 862
TaaI ACNGT 4 cut(s) 67, 261, 266, 623
TaqI TCGA 1 cut(s) 158
TasI AATT 5 cut(s) 12, 147, 382, 412, 552
TatI WGTACW 3 cut(s) 261, 268, 548
TfiI GAWTC 2 cut(s) 241, 746
Tru1I TTAA 6 cut(s) 62, 231, 354, 372, 653, 869
Tru9I TTAA 6 cut(s) 62, 231, 354, 372, 653, 869
TscAI CASTG 3 cut(s) 271, 466, 793
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 5 cut(s) 54, 57, 666, 810, 844
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 4 cut(s) 234, 303, 320, 642
TspRI CASTG 3 cut(s) 271, 466, 793
XagI CCTNNNNNAGG 1 cut(s) 705
XapI RAATTY 2 cut(s) 147, 382
XbaI TCTAGA 1 cut(s) 449
XceI RCATGY 1 cut(s) 535
XspI CTAG 4 cut(s) 132, 336, 450, 816
Zsp2I ATGCAT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.