Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010050

Physical Location & Seq

Genomic Coordinates Reverse (-)

18752967 .. 18754098

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g21790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGAATGAAAATTGAATATGCCATCAATATTTTAGGCAGCTCACAAAATAGCTGCAGCTTAACCGTGCATCGGGTGGATGACCGGGACTATTTTCAGAAAACTGGGCTGAAGGAGAAGTGTCAGAAGGCTAGAGTTGAGGACACACTTCGGAACTCGATGGACAGGATGCTGGACAAGCACAACATGGATACCATAAAAAGGACAATGCAGATGCATGAAGATACCTTTAAACACCAGATTCGAGAGCTACACCGTCTGTACAGTGTACAAAAGATGCTAATGGATGAACTGAAGAAAAAGATTAAACAAAATAGACTTTGCGGTCCAATAACTAGTAGTGCAGATCACATTAACCAATCTCAGTGGATTAACTGGCAGCATTCGATAACTCAAACTTCTTCGGGATATAATTTCCATTTTCAGAGATTGAGGGATGATCTGAACTCGAGAGAGCGTAGTGGAAGTTGCTCAGGAGACACTTTGAGAATGTCAAGGGGATTTGACCTTGAAAGGCCTGCCGAGGAAGACATCTCAACCAGATTCAGTACAATTGACCAAGAACAAGCAGGGCCAAGCTCTCACATGTCCCTCAAAAGTAAGATTGTAGCTGGCTGTGATGAAGATAGTGAAGTGGAGCTTTCATTAAGCATCGGAAGTAGCAAGAACAGGAAGAGATCAAAATCTTACCAGCCTCAGTCGGGATGTTCGGAACTGATCCATAAAGCAAAAGAACTCGATTCGCCTGCCTCATTCAAATCAGATAGAGGAGGAGATAGCAGTGATCCCACAACTCCCATGAGCAGCTCTAGTGCGACATGTGACCAAGAAAGAAAGCACCCACATTGGCTTTTCCATGGTTTAAAGCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

33.31

Weight (kDa)

8.75

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57340 AT5G57340
fragaria_vesca	FvH4_4g07760 FvH4_4g07760
malus_domestica	MD13G1247000.v1.1 MD16G1253900.v1.1
prunus_persica	Prupe.1G081700_v2.0.a1 Prupe.1G081700_v2.0.a1 Prupe.1G081700_v2.0.a1 Prupe.1G081700_v2.0.a1
pyrus_communis	pycom13g21790 pycom16g21510
rosa_chinensis	RchiOBHm_Chr4g0400841
rosa_laevigata	RLG00000009174
rosa_roxburghii	Rroxscaffold_5G00345690
rosa_rugosa	Rorug04G0026100
rosa_samantha	Rh4AG104200 Rh4BG099400 Rh4CG112500 Rh4DG096100
rosa_wichuraiana	Rw4G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	324
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	2 cut(s)	712, 779
AcuI	CTGAAG	2 cut(s)	131, 314
AfaI	GTAC	3 cut(s)	263, 270, 550
AfiI	CCNNNNNNNGG	3 cut(s)	72, 201, 701
AflIII	ACRYGT	2 cut(s)	585, 818
AgsI	TTSAA	3 cut(s)	17, 512, 757
AhlI	ACTAGT	1 cut(s)	335
AluBI	AGCT	9 cut(s)	42, 54, 60, 250, 579, 611, 640, 807, 868
AluI	AGCT	9 cut(s)	42, 54, 60, 250, 579, 611, 640, 807, 868
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	2 cut(s)	712, 779
Ama87I	CYCGRG	1 cut(s)	448
AoxI	GGCC	2 cut(s)	515, 572
ApeKI	GCWGC	5 cut(s)	39, 54, 57, 379, 804
AspS9I	GGNCC	2 cut(s)	326, 572
AsuC2I	CCSGG	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	534
BbvI	GCAGC	5 cut(s)	41, 51, 69, 391, 816
BccI	CCATC	2 cut(s)	32, 154
BcgI	CGANNNNNNTGC	2 cut(s)	728, 762
BciVI	GTATCC	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	471
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	3 cut(s)	132, 336, 810
BfmI	CTRYAG	1 cut(s)	55
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	5 cut(s)	40, 55, 58, 380, 805
BlsI	GCNGC	5 cut(s)	41, 56, 59, 381, 806
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	326
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	326, 572
BmrFI	CCNGG	1 cut(s)	86
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	5 cut(s)	79, 159, 204, 267, 660
BmuI	ACTGGG	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	534
Bpu10I	CCTNAGC	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	854
BpuMI	CCSGG	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	682
BsaJI	CCNNGG	2 cut(s)	522, 856
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 201, 701
Bse1I	ACTGG	2 cut(s)	109, 380
Bse8I	GATNNNNATC	1 cut(s)	682
BseDI	CCNNGG	2 cut(s)	522, 856
BseGI	GGATG	5 cut(s)	85, 174, 292, 442, 710
BseJI	GATNNNNATC	1 cut(s)	682
BseLI	CCNNNNNNNGG	3 cut(s)	72, 201, 701
BseMII	CTCAG	3 cut(s)	377, 486, 710
BseNI	ACTGG	2 cut(s)	109, 380
BseRI	GAGGAG	2 cut(s)	783, 786
BseXI	GCAGC	5 cut(s)	41, 51, 69, 391, 816
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	2 cut(s)	517, 574
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	2 cut(s)	101, 574
BslI	CCNNNNNNNGG	3 cut(s)	72, 201, 701
BsmAI	GTCTC	1 cut(s)	471
BsmFI	GGGAC	2 cut(s)	101, 574
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	517, 574
BsoBI	CYCGRG	1 cut(s)	448
Bsp1407I	TGTACA	2 cut(s)	261, 268
Bsp143I	GATC	5 cut(s)	346, 439, 677, 717, 784
Bsp19I	CCATGG	1 cut(s)	856
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	2 cut(s)	517, 574
BspCNI	CTCAG	3 cut(s)	376, 485, 709
BspMAI	CTGCAG	1 cut(s)	59
BspPI	GGATC	2 cut(s)	712, 779
BsrGI	TGTACA	2 cut(s)	261, 268
BsrI	ACTGG	2 cut(s)	109, 380
BssECI	CCNNGG	2 cut(s)	522, 856
BssMI	GATC	5 cut(s)	346, 439, 677, 717, 784
BssT1I	CCWWGG	1 cut(s)	856
Bst4CI	ACNGT	3 cut(s)	67, 257, 266
Bst6I	CTCTTC	1 cut(s)	668
BstAUI	TGTACA	2 cut(s)	261, 268
BstC8I	GCNNGC	3 cut(s)	519, 613, 747
BstDEI	CTNAG	3 cut(s)	363, 472, 696
BstDSI	CCRYGG	1 cut(s)	856
BstF5I	GGATG	5 cut(s)	85, 174, 292, 442, 710
BstKTI	GATC	5 cut(s)	349, 442, 680, 720, 787
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	5 cut(s)	346, 439, 677, 717, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNSI	RCATGY	2 cut(s)	589, 822
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	55
BstV1I	GCAGC	5 cut(s)	41, 51, 69, 391, 816
BstV2I	GAAGAC	1 cut(s)	534
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	517, 574
BtgI	CCRYGG	1 cut(s)	856
BtsCI	GGATG	5 cut(s)	85, 174, 292, 442, 710
BtsI	GCAGTG	1 cut(s)	787
BtsIMutI	CAGTG	3 cut(s)	271, 371, 787
Cac8I	GCNNGC	3 cut(s)	519, 613, 747
Cfr13I	GGNCC	2 cut(s)	326, 572
Csp6I	GTAC	3 cut(s)	262, 269, 549
CspCI	CAANNNNNGTGG	2 cut(s)	347, 382
CviAII	CATG	6 cut(s)	187, 218, 586, 799, 819, 857
CviQI	GTAC	3 cut(s)	262, 269, 549
DdeI	CTNAG	3 cut(s)	363, 472, 696
DpnI	GATC	5 cut(s)	348, 441, 679, 719, 786
DpnII	GATC	5 cut(s)	346, 439, 677, 717, 784
DraI	TTTAAA	2 cut(s)	232, 864
DrdI	GACNNNNNNGTC	1 cut(s)	324
DseDI	GACNNNNNNGTC	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
Eco130I	CCWWGG	1 cut(s)	856
Eco147I	AGGCCT	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	326
Eco57I	CTGAAG	2 cut(s)	131, 314
Eco88I	CYCGRG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	856
EcoT22I	ATGCAT	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	856
FaeI	CATG	6 cut(s)	190, 221, 589, 802, 822, 860
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FaqI	GGGAC	2 cut(s)	101, 574
FatI	CATG	6 cut(s)	186, 217, 585, 798, 818, 856
Fnu4HI	GCNGC	5 cut(s)	40, 55, 58, 380, 805
FokI	GGATG	5 cut(s)	92, 181, 299, 449, 717
Fsp4HI	GCNGC	5 cut(s)	40, 55, 58, 380, 805
FspBI	CTAG	3 cut(s)	132, 336, 810
GluI	GCNGC	5 cut(s)	40, 55, 58, 380, 805
HaeIII	GGCC	2 cut(s)	517, 574
HapII	CCGG	1 cut(s)	85
Hin1II	CATG	6 cut(s)	190, 221, 589, 802, 822, 860
HinfI	GANTC	3 cut(s)	241, 543, 740
HpaII	CCGG	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	8 cut(s)	99, 126, 153, 426, 444, 656, 712, 763
Hpy188III	TCNNGA	5 cut(s)	245, 405, 450, 474, 702
Hpy8I	GTNNAC	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	106, 121
HpyCH4III	ACNGT	3 cut(s)	67, 257, 266
HpyCH4V	TGCA	5 cut(s)	57, 70, 211, 217, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	3 cut(s)	363, 472, 696
Hsp92II	CATG	6 cut(s)	190, 221, 589, 802, 822, 860
Kzo9I	GATC	5 cut(s)	346, 439, 677, 717, 784
LmnI	GCTCC	1 cut(s)	637
Lsp1109I	GCAGC	5 cut(s)	41, 51, 69, 391, 816
LweI	GCATC	5 cut(s)	79, 159, 204, 267, 660
MaeI	CTAG	3 cut(s)	132, 336, 810
MaeIII	GTNAC	1 cut(s)	821
MalI	GATC	5 cut(s)	348, 441, 679, 719, 786
MboI	GATC	5 cut(s)	346, 439, 677, 717, 784
MboII	GAAGA	6 cut(s)	233, 307, 393, 539, 635, 685
MfeI	CAATTG	1 cut(s)	552
MluCI	AATT	3 cut(s)	12, 412, 552
MnlI	CCTC	8 cut(s)	133, 426, 517, 602, 705, 760, 761, 764
Mph1103I	ATGCAT	1 cut(s)	219
MseI	TTAA	7 cut(s)	62, 231, 306, 354, 372, 647, 863
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	86
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	178
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	856
NdeII	GATC	5 cut(s)	346, 439, 677, 717, 784
NlaIII	CATG	6 cut(s)	190, 221, 589, 802, 822, 860
NmeAIII	GCCGAG	1 cut(s)	547
NmuCI	GTSAC	1 cut(s)	821
NsiI	ATGCAT	1 cut(s)	219
NspI	RCATGY	2 cut(s)	589, 822
PaeR7I	CTCGAG	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	517
PciI	ACATGT	2 cut(s)	585, 818
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	3 cut(s)	241, 543, 740
PkrI	GCNGC	5 cut(s)	41, 56, 59, 381, 806
PscI	ACATGT	2 cut(s)	585, 818
PspPI	GGNCC	2 cut(s)	326, 572
PstI	CTGCAG	1 cut(s)	59
RsaI	GTAC	3 cut(s)	263, 270, 550
RsaNI	GTAC	3 cut(s)	262, 269, 549
SaqAI	TTAA	7 cut(s)	62, 231, 306, 354, 372, 647, 863
SatI	GCNGC	5 cut(s)	40, 55, 58, 380, 805
Sau3AI	GATC	5 cut(s)	346, 439, 677, 717, 784
Sau96I	GGNCC	2 cut(s)	326, 572
ScrFI	CCNGG	1 cut(s)	86
SfaNI	GCATC	5 cut(s)	79, 159, 204, 267, 660
SfcI	CTRYAG	1 cut(s)	55
Sfr274I	CTCGAG	1 cut(s)	448
SinI	GGWCC	1 cut(s)	326
SlaI	CTCGAG	1 cut(s)	448
SmlI	CTYRAG	2 cut(s)	448, 869
SmoI	CTYRAG	2 cut(s)	448, 869
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	3 cut(s)	12, 412, 552
SseBI	AGGCCT	1 cut(s)	517
SsiI	CCGC	1 cut(s)	324
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	3 cut(s)	132, 336, 810
StuI	AGGCCT	1 cut(s)	517
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	856
TaaI	ACNGT	3 cut(s)	67, 257, 266
TaqI	TCGA	5 cut(s)	158, 244, 386, 449, 738
TasI	AATT	3 cut(s)	12, 412, 552
TatI	WGTACW	3 cut(s)	261, 268, 548
TfiI	GAWTC	3 cut(s)	241, 543, 740
Tru1I	TTAA	7 cut(s)	62, 231, 306, 354, 372, 647, 863
Tru9I	TTAA	7 cut(s)	62, 231, 306, 354, 372, 647, 863
TscAI	CASTG	3 cut(s)	271, 371, 787
TseFI	GTSAC	1 cut(s)	821
TseI	GCWGC	5 cut(s)	39, 54, 57, 379, 804
Tsp45I	GTSAC	1 cut(s)	821
TspDTI	ATGAA	5 cut(s)	23, 234, 303, 633, 636
TspRI	CASTG	3 cut(s)	271, 371, 787
VpaK11BI	GGWCC	1 cut(s)	326
XceI	RCATGY	2 cut(s)	589, 822
XhoI	CTCGAG	1 cut(s)	448
XspI	CTAG	3 cut(s)	132, 336, 810
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.