Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010050

Physical Location & Seq

Genomic Coordinates Reverse (-)

26014165 .. 26017044

Gene Structure 2880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1247000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGACAGGACGCTGGACAAGCACAACATGGATACCATAAAAAGTACGATGCAGATGCATGAAGATACGTTTAAACACCAGATTCGAGAGCTACACCGTCTGTACAGTGTACAAAAGATGCTAATGGATGAACTGAAGAAAAAGATTAAACAAAATAGACTTTGCGGCCCAATAACCAGTAGTGCAGATCACATTAACCAATCTCAGTGGATTAACTGGCAGCATTCAATAACTCAAACTTCTTCTGGATATAATTTCCATTTTCAGAGATTGAGGGATGATCCGAACTCTAGAGAGCGTAGTGGAAGTTGCTCGGGAGACACTCTGAGAATGTCAAGGGGATTTGACCTTGAAAGGCCTGCCGAGGAAGACATCTCAACCAGATTCAGTACAATTGACCAAGAACAAGCAGGGCCAAGCTCTCACATGTCCCTCAAAAGTAAGAGTGTAACTGGCTGTGATGAAGATAGTGAAGTGGAGCTTTCATTAAGCATCGGAAGTAGCAAGAACAGGAAGAGATCGAAATCTTACCAGCCTCAGTCGGGATGTTCAGAACTGATCCATAAAGCAAAAGAACTCGATTCGCCTGCCTCATTCAAATCAGATAGAGGAGGAGATAGCAGTGATCCCACAACTCCCATGAGCAGCTCTAGTGCGACATGTGACCAAGAAAGAAAGCAGCCACATTGGCTTTTCCATGGTTTAAAGCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

27.13

Weight (kDa)

8.24

Isoelectric Point (pI)

55.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57340 AT5G57340
fragaria_vesca	FvH4_4g07760 FvH4_4g07760
malus_domestica	MD13G1247000.v1.1 MD16G1253900.v1.1
prunus_persica	Prupe.1G081700_v2.0.a1 Prupe.1G081700_v2.0.a1 Prupe.1G081700_v2.0.a1 Prupe.1G081700_v2.0.a1
pyrus_communis	pycom13g21790 pycom16g21510
rosa_chinensis	RchiOBHm_Chr4g0400841
rosa_laevigata	RLG00000009174
rosa_roxburghii	Rroxscaffold_5G00345690
rosa_rugosa	Rorug04G0026100
rosa_samantha	Rh4AG104200 Rh4BG099400 Rh4CG112500 Rh4DG096100
rosa_wichuraiana	Rw4G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	3 cut(s)	275, 553, 620
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	4 cut(s)	46, 104, 111, 391
AfiI	CCNNNNNNNGG	1 cut(s)	542
AflIII	ACRYGT	2 cut(s)	426, 659
AgsI	TTSAA	3 cut(s)	228, 353, 598
AluBI	AGCT	5 cut(s)	91, 420, 481, 648, 709
AluI	AGCT	5 cut(s)	91, 420, 481, 648, 709
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	3 cut(s)	275, 553, 620
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	3 cut(s)	166, 356, 413
ApeKI	GCWGC	3 cut(s)	220, 645, 679
AspS9I	GGNCC	2 cut(s)	167, 413
AvaI	CYCGRG	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	232, 657, 691
BcgI	CGANNNNNNTGC	4 cut(s)	37, 71, 569, 603
BciVI	GTATCC	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	2 cut(s)	291, 651
BfuI	GTATCC	1 cut(s)	25
BglI	GCCNNNNNGGC	1 cut(s)	688
BisI	GCNGC	4 cut(s)	166, 221, 646, 680
BlsI	GCNGC	4 cut(s)	167, 222, 647, 681
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	2 cut(s)	167, 413
BmsI	GCATC	4 cut(s)	39, 45, 108, 501
BpiI	GAAGAC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	695
BsaBI	GATNNNNATC	1 cut(s)	523
BsaJI	CCNNGG	2 cut(s)	363, 697
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse1I	ACTGG	3 cut(s)	177, 221, 457
Bse8I	GATNNNNATC	1 cut(s)	523
BseDI	CCNNGG	2 cut(s)	363, 697
BseGI	GGATG	3 cut(s)	133, 283, 551
BseJI	GATNNNNATC	1 cut(s)	523
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseMII	CTCAG	3 cut(s)	218, 317, 551
BseNI	ACTGG	3 cut(s)	177, 221, 457
BseRI	GAGGAG	2 cut(s)	624, 627
BseXI	GCAGC	3 cut(s)	232, 657, 691
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	168, 358, 415
BsiHKCI	CYCGRG	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	3 cut(s)	168, 358, 415
BsoBI	CYCGRG	1 cut(s)	313
Bsp1407I	TGTACA	2 cut(s)	102, 109
Bsp143I	GATC	5 cut(s)	187, 280, 518, 558, 625
Bsp19I	CCATGG	1 cut(s)	697
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	3 cut(s)	168, 358, 415
BspCNI	CTCAG	3 cut(s)	217, 318, 550
BspPI	GGATC	3 cut(s)	275, 553, 620
BsrGI	TGTACA	2 cut(s)	102, 109
BsrI	ACTGG	3 cut(s)	177, 221, 457
BssECI	CCNNGG	2 cut(s)	363, 697
BssMI	GATC	5 cut(s)	187, 280, 518, 558, 625
BssT1I	CCWWGG	1 cut(s)	697
Bst4CI	ACNGT	2 cut(s)	98, 107
Bst6I	CTCTTC	1 cut(s)	509
BstAUI	TGTACA	2 cut(s)	102, 109
BstC8I	GCNNGC	2 cut(s)	360, 588
BstDEI	CTNAG	3 cut(s)	204, 326, 537
BstDSI	CCRYGG	1 cut(s)	697
BstF5I	GGATG	3 cut(s)	133, 283, 551
BstKTI	GATC	5 cut(s)	190, 283, 521, 561, 628
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	5 cut(s)	187, 280, 518, 558, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 688
BstNSI	RCATGY	2 cut(s)	430, 663
BstV1I	GCAGC	3 cut(s)	232, 657, 691
BstV2I	GAAGAC	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	3 cut(s)	168, 358, 415
BtgI	CCRYGG	1 cut(s)	697
BtsCI	GGATG	3 cut(s)	133, 283, 551
BtsI	GCAGTG	1 cut(s)	628
BtsIMutI	CAGTG	3 cut(s)	112, 212, 628
Cac8I	GCNNGC	2 cut(s)	360, 588
Cfr13I	GGNCC	2 cut(s)	167, 413
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	4 cut(s)	45, 103, 110, 390
CspCI	CAANNNNNGTGG	2 cut(s)	188, 223
CviAII	CATG	6 cut(s)	28, 59, 427, 640, 660, 698
CviQI	GTAC	4 cut(s)	45, 103, 110, 390
DdeI	CTNAG	3 cut(s)	204, 326, 537
DpnI	GATC	5 cut(s)	189, 282, 520, 560, 627
DpnII	GATC	5 cut(s)	187, 280, 518, 558, 625
DraI	TTTAAA	2 cut(s)	73, 705
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
Eco130I	CCWWGG	1 cut(s)	697
Eco147I	AGGCCT	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	697
EcoT22I	ATGCAT	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	697
FaeI	CATG	6 cut(s)	31, 62, 430, 643, 663, 701
FaiI	YATR	9 cut(s)	29, 38, 60, 252, 428, 564, 641, 661, 699
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	6 cut(s)	27, 58, 426, 639, 659, 697
Fnu4HI	GCNGC	4 cut(s)	166, 221, 646, 680
FokI	GGATG	3 cut(s)	140, 290, 558
Fsp4HI	GCNGC	4 cut(s)	166, 221, 646, 680
FspBI	CTAG	2 cut(s)	291, 651
GluI	GCNGC	4 cut(s)	166, 221, 646, 680
HaeIII	GGCC	3 cut(s)	168, 358, 415
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	6 cut(s)	31, 62, 430, 643, 663, 701
HinfI	GANTC	3 cut(s)	82, 384, 581
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	6 cut(s)	267, 285, 327, 497, 553, 604
Hpy188III	TCNNGA	5 cut(s)	86, 246, 291, 315, 543
Hpy8I	GTNNAC	1 cut(s)	110
HpyCH4III	ACNGT	2 cut(s)	98, 107
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	3 cut(s)	52, 58, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 688
HpyF3I	CTNAG	3 cut(s)	204, 326, 537
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	6 cut(s)	31, 62, 430, 643, 663, 701
Kzo9I	GATC	5 cut(s)	187, 280, 518, 558, 625
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	3 cut(s)	232, 657, 691
LweI	GCATC	4 cut(s)	39, 45, 108, 501
MaeI	CTAG	2 cut(s)	291, 651
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	448, 662
MalI	GATC	5 cut(s)	189, 282, 520, 560, 627
MboI	GATC	5 cut(s)	187, 280, 518, 558, 625
MboII	GAAGA	6 cut(s)	74, 148, 234, 380, 476, 526
MfeI	CAATTG	1 cut(s)	393
MluCI	AATT	2 cut(s)	253, 393
MnlI	CCTC	7 cut(s)	267, 358, 443, 546, 601, 602, 605
Mph1103I	ATGCAT	1 cut(s)	60
MseI	TTAA	6 cut(s)	72, 147, 195, 213, 488, 704
MssI	GTTTAAAC	1 cut(s)	73
MunI	CAATTG	1 cut(s)	393
Mva1269I	GAATGC	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	19, 688
NcoI	CCATGG	1 cut(s)	697
NdeII	GATC	5 cut(s)	187, 280, 518, 558, 625
NlaIII	CATG	6 cut(s)	31, 62, 430, 643, 663, 701
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	662
NsiI	ATGCAT	1 cut(s)	60
NspI	RCATGY	2 cut(s)	430, 663
PceI	AGGCCT	1 cut(s)	358
PciI	ACATGT	2 cut(s)	426, 659
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	3 cut(s)	82, 384, 581
PkrI	GCNGC	4 cut(s)	167, 222, 647, 681
PmeI	GTTTAAAC	1 cut(s)	73
PscI	ACATGT	2 cut(s)	426, 659
PspPI	GGNCC	2 cut(s)	167, 413
RsaI	GTAC	4 cut(s)	46, 104, 111, 391
RsaNI	GTAC	4 cut(s)	45, 103, 110, 390
SaqAI	TTAA	6 cut(s)	72, 147, 195, 213, 488, 704
SatI	GCNGC	4 cut(s)	166, 221, 646, 680
Sau3AI	GATC	5 cut(s)	187, 280, 518, 558, 625
Sau96I	GGNCC	2 cut(s)	167, 413
SetI	ASST	7 cut(s)	71, 93, 351, 422, 483, 650, 711
SfaNI	GCATC	4 cut(s)	39, 45, 108, 501
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	2 cut(s)	253, 393
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	2 cut(s)	291, 651
StuI	AGGCCT	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	697
TaaI	ACNGT	2 cut(s)	98, 107
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	3 cut(s)	85, 521, 579
TasI	AATT	2 cut(s)	253, 393
TatI	WGTACW	3 cut(s)	102, 109, 389
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	3 cut(s)	82, 384, 581
Tru1I	TTAA	6 cut(s)	72, 147, 195, 213, 488, 704
Tru9I	TTAA	6 cut(s)	72, 147, 195, 213, 488, 704
TscAI	CASTG	3 cut(s)	112, 212, 628
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	3 cut(s)	220, 645, 679
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	4 cut(s)	75, 144, 474, 477
TspRI	CASTG	3 cut(s)	112, 212, 628
XbaI	TCTAGA	1 cut(s)	290
XceI	RCATGY	2 cut(s)	430, 663
XspI	CTAG	2 cut(s)	291, 651
Zsp2I	ATGCAT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.