Rh4BG099400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0010050
Physical Location & Seq
Reverse (-)
16974893 .. 16975998
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG099400.1

Sequence Viewer

Length: 750 bp
ATGGACAGAATGCTTGATAAGCATAACATGGATACCATCAGAAAGACAATGCAGATGCATGAAGACACCTTTAGGCACCAGATATGTGAGCTCCACCGGCTGTACAGTGTACAAAAGATGCTAATGGATGAACTGAACCAAGAAATAAAACAAAACAGAATTTGGGGTCCCATGACTAGTAGTGCAGATCACATTCACATTCACCAGTCTCAGTTGTTTAACCAGCAGCATTTGACAGCTCAAACTGCGTCTTCCGGATATAATTTCCATCTTCATAGGTTGAGAGATGATCCAAACTCTAGAGAGCGCAGTGGAAGTTGCTCAGGAGAGTATACCATGAGAATTTCAAGAGGTTTTGATCTCGAAAGGCCAGCTGCCGAGGAAGACATCTCGACAGGAGTTAGTACTATTGATCAAGACCAGACAGGGCCAACTTCTAACATGGCATTGATCAAAAGTAACAATATGAGGAGCATGGATGTCTATGACGAAGATAGTGAGGAAGTGGAGCTTACATTAAGCATTGGAAGCAGCAAGAGCAAGAAAAGATCCAAACCTTACCTGCGGCCTCATTTAGGGTGTTCGGAGCTGGTGATCAATAAAGAAAAGGTACTCGACTCACCTGCCTCGTTCAAATCAGATAGAGGAGATTGCAGTGATCCCACAACTCCCATGAGCAGCTCCAGTGCAACAGTTGACCAGGAAAGAAAGCAGCCACATTGGCTTTTCCATGGTTTAAAGCTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.57

Weight (kDa)

6.35

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 631
Acc36I ACCTGC 2 cut(s) 570, 631
AccB1I GGYRCC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 332
AccIII TCCGGA 1 cut(s) 254
AciI CCGC 1 cut(s) 565
AclWI GGATC 3 cut(s) 284, 543, 653
AcsI RAATTY 2 cut(s) 159, 342
AfaI GTAC 4 cut(s) 104, 111, 406, 612
AfiI CCNNNNNNNGG 1 cut(s) 575
AgsI TTSAA 2 cut(s) 348, 634
AhlI ACTAGT 1 cut(s) 176
AjnI CCWGG 1 cut(s) 699
AluBI AGCT 7 cut(s) 91, 239, 374, 511, 589, 681, 742
AluI AGCT 7 cut(s) 91, 239, 374, 511, 589, 681, 742
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 3 cut(s) 284, 543, 653
Aor13HI TCCGGA 1 cut(s) 254
AoxI GGCC 3 cut(s) 368, 428, 566
ApeKI GCWGC 5 cut(s) 226, 374, 531, 678, 712
ApoI RAATTY 2 cut(s) 159, 342
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 167, 428
AsuHPI GGTGA 3 cut(s) 194, 604, 612
AvaII GGWCC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 93
BbsI GAAGAC 3 cut(s) 69, 243, 390
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 5 cut(s) 238, 361, 543, 690, 724
BccI CCATC 2 cut(s) 44, 276
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BciT130I CCWGG 1 cut(s) 701
BciVI GTATCC 1 cut(s) 25
BclI TGATCA 3 cut(s) 412, 450, 594
BcoDI GTCTC 1 cut(s) 213
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 2 cut(s) 177, 300
BfuAI ACCTGC 2 cut(s) 570, 631
BfuI GTATCC 1 cut(s) 25
BglI GCCNNNNNGGC 1 cut(s) 721
BisI GCNGC 6 cut(s) 227, 375, 532, 566, 679, 713
BlsI GCNGC 6 cut(s) 228, 376, 533, 567, 680, 714
BmcAI AGTACT 1 cut(s) 406
Bme1390I CCNGG 1 cut(s) 701
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 167, 428
BmiI GGNNCC 3 cut(s) 77, 168, 169
BmrFI CCNGG 1 cut(s) 701
BmsI GCATC 2 cut(s) 45, 108
BpiI GAAGAC 3 cut(s) 69, 243, 390
BpmI CTGGAG 1 cut(s) 667
Bpu10I CCTNAGC 1 cut(s) 322
BsaJI CCNNGG 2 cut(s) 378, 730
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse118I RCCGGY 1 cut(s) 96
Bse1I ACTGG 2 cut(s) 205, 684
BseAI TCCGGA 1 cut(s) 254
BseBI CCWGG 1 cut(s) 701
BseDI CCNNGG 2 cut(s) 378, 730
BseGI GGATG 2 cut(s) 133, 484
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMII CTCAG 2 cut(s) 224, 336
BseNI ACTGG 2 cut(s) 205, 684
BseRI GAGGAG 2 cut(s) 484, 660
BseXI GCAGC 5 cut(s) 238, 361, 543, 690, 724
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 3 cut(s) 370, 430, 568
BshNI GGYRCC 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 2 cut(s) 97, 255
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 3 cut(s) 370, 430, 568
Bsp1286I GDGCHC 1 cut(s) 93
Bsp13I TCCGGA 1 cut(s) 254
Bsp1407I TGTACA 2 cut(s) 102, 109
Bsp143I GATC 8 cut(s) 187, 289, 358, 412, 450, 548, 594, 658
Bsp19I CCATGG 1 cut(s) 730
BspACI CCGC 1 cut(s) 565
BspANI GGCC 3 cut(s) 370, 430, 568
BspCNI CTCAG 2 cut(s) 223, 335
BspEI TCCGGA 1 cut(s) 254
BspLI GGNNCC 3 cut(s) 77, 168, 169
BspMI ACCTGC 2 cut(s) 570, 631
BspPI GGATC 3 cut(s) 284, 543, 653
BspT107I GGYRCC 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 96
BsrGI TGTACA 2 cut(s) 102, 109
BsrI ACTGG 2 cut(s) 205, 684
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 378, 730
BssMI GATC 8 cut(s) 187, 289, 358, 412, 450, 548, 594, 658
BssNAI GTATAC 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 730
Bst1107I GTATAC 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 701
Bst4CI ACNGT 2 cut(s) 107, 694
BstAUI TGTACA 2 cut(s) 102, 109
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 210, 322
BstDSI CCRYGG 1 cut(s) 730
BstENI CCTNNNNNAGG 1 cut(s) 573
BstF5I GGATG 2 cut(s) 133, 484
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 8 cut(s) 190, 292, 361, 415, 453, 551, 597, 661
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 8 cut(s) 187, 289, 358, 412, 450, 548, 594, 658
BstMWI GCNNNNNNNGC 6 cut(s) 19, 97, 245, 528, 537, 721
BstNI CCWGG 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 699
BstV1I GCAGC 5 cut(s) 238, 361, 543, 690, 724
BstV2I GAAGAC 3 cut(s) 69, 243, 390
BstX2I RGATCY 1 cut(s) 548
BstYI RGATCY 1 cut(s) 548
BstZ17I GTATAC 1 cut(s) 333
BsuI GTATCC 1 cut(s) 25
BsuRI GGCC 3 cut(s) 370, 430, 568
BtgI CCRYGG 1 cut(s) 730
BtsCI GGATG 2 cut(s) 133, 484
BtsI GCAGTG 2 cut(s) 316, 661
BtsIMutI CAGTG 4 cut(s) 112, 316, 661, 691
BveI ACCTGC 2 cut(s) 570, 631
Cac8I GCNNGC 1 cut(s) 372
CfoI GCGC 1 cut(s) 309
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 2 cut(s) 167, 428
CseI GACGC 1 cut(s) 237
Csp6I GTAC 4 cut(s) 103, 110, 405, 611
CviAII CATG 8 cut(s) 28, 59, 172, 337, 442, 475, 673, 731
CviQI GTAC 4 cut(s) 103, 110, 405, 611
DdeI CTNAG 2 cut(s) 210, 322
DpnI GATC 8 cut(s) 189, 291, 360, 414, 452, 550, 596, 660
DpnII GATC 8 cut(s) 187, 289, 358, 412, 450, 548, 594, 658
DraI TTTAAA 1 cut(s) 738
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 730
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 167
Eco53kI GAGCTC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 573
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 699
EcoT14I CCWWGG 1 cut(s) 730
EcoT22I ATGCAT 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 730
FaeI CATG 8 cut(s) 31, 62, 175, 340, 445, 478, 676, 734
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FaqI GGGAC 1 cut(s) 153
FatI CATG 8 cut(s) 27, 58, 171, 336, 441, 474, 672, 730
FbaI TGATCA 3 cut(s) 412, 450, 594
FblI GTMKAC 1 cut(s) 332
Fnu4HI GCNGC 6 cut(s) 227, 375, 532, 566, 679, 713
FokI GGATG 2 cut(s) 140, 491
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 6 cut(s) 227, 375, 532, 566, 679, 713
FspBI CTAG 2 cut(s) 177, 300
GlaI GCGC 1 cut(s) 308
GluI GCNGC 6 cut(s) 227, 375, 532, 566, 679, 713
GsuI CTGGAG 1 cut(s) 667
HaeIII GGCC 3 cut(s) 370, 430, 568
HapII CCGG 2 cut(s) 97, 255
HgaI GACGC 1 cut(s) 237
HhaI GCGC 1 cut(s) 309
Hin1II CATG 8 cut(s) 31, 62, 175, 340, 445, 478, 676, 734
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HinfI GANTC 1 cut(s) 617
HpaII CCGG 2 cut(s) 97, 255
HphI GGTGA 3 cut(s) 194, 604, 612
Hpy166II GTNNAC 3 cut(s) 110, 333, 697
Hpy188I TCNGA 3 cut(s) 41, 586, 640
Hpy188III TCNNGA 7 cut(s) 255, 300, 324, 348, 362, 391, 416
Hpy8I GTNNAC 3 cut(s) 110, 333, 697
HpyCH4III ACNGT 2 cut(s) 107, 694
HpyCH4V TGCA 5 cut(s) 52, 58, 185, 654, 689
HpyF10VI GCNNNNNNNGC 6 cut(s) 19, 97, 245, 528, 537, 721
HpyF3I CTNAG 2 cut(s) 210, 322
Hsp92II CATG 8 cut(s) 31, 62, 175, 340, 445, 478, 676, 734
HspAI GCGC 1 cut(s) 307
KflI GGGWCCC 1 cut(s) 167
Kpn2I TCCGGA 1 cut(s) 254
Ksp22I TGATCA 3 cut(s) 412, 450, 594
Kzo9I GATC 8 cut(s) 187, 289, 358, 412, 450, 548, 594, 658
LmnI GCTCC 5 cut(s) 96, 471, 508, 586, 686
Lsp1109I GCAGC 5 cut(s) 238, 361, 543, 690, 724
LweI GCATC 2 cut(s) 45, 108
MaeI CTAG 2 cut(s) 177, 300
MaeIII GTNAC 1 cut(s) 458
MalI GATC 8 cut(s) 189, 291, 360, 414, 452, 550, 596, 660
MboI GATC 8 cut(s) 187, 289, 358, 412, 450, 548, 594, 658
MboII GAAGA 5 cut(s) 74, 243, 263, 395, 503
MflI RGATCY 1 cut(s) 548
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 3 cut(s) 159, 262, 342
MlyI GAGTC 1 cut(s) 611
MnlI CCTC 7 cut(s) 344, 373, 462, 493, 579, 637, 638
Mph1103I ATGCAT 1 cut(s) 60
MroI TCCGGA 1 cut(s) 254
MseI TTAA 3 cut(s) 219, 518, 737
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 2 cut(s) 97, 255
MspR9I CCNGG 1 cut(s) 701
Mva1269I GAATGC 1 cut(s) 15
MvaI CCWGG 1 cut(s) 701
MwoI GCNNNNNNNGC 6 cut(s) 19, 97, 245, 528, 537, 721
NcoI CCATGG 1 cut(s) 730
NdeII GATC 8 cut(s) 187, 289, 358, 412, 450, 548, 594, 658
NlaIII CATG 8 cut(s) 31, 62, 175, 340, 445, 478, 676, 734
NlaIV GGNNCC 3 cut(s) 77, 168, 169
NmeAIII GCCGAG 1 cut(s) 403
NsiI ATGCAT 1 cut(s) 60
PaqCI CACCTGC 1 cut(s) 631
PctI GAATGC 1 cut(s) 15
PkrI GCNGC 6 cut(s) 228, 376, 533, 567, 680, 714
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
PpuMI RGGWCCY 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 699
PspGI CCWGG 1 cut(s) 699
PspN4I GGNNCC 3 cut(s) 77, 168, 169
PspPI GGNCC 2 cut(s) 167, 428
PspPPI RGGWCCY 1 cut(s) 167
PsuI RGATCY 1 cut(s) 548
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 4 cut(s) 104, 111, 406, 612
RsaNI GTAC 4 cut(s) 103, 110, 405, 611
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 3 cut(s) 219, 518, 737
SatI GCNGC 6 cut(s) 227, 375, 532, 566, 679, 713
Sau3AI GATC 8 cut(s) 187, 289, 358, 412, 450, 548, 594, 658
Sau96I GGNCC 2 cut(s) 167, 428
ScaI AGTACT 1 cut(s) 406
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 1 cut(s) 701
SduI GDGCHC 1 cut(s) 93
SfaNI GCATC 2 cut(s) 45, 108
SinI GGWCC 1 cut(s) 167
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 3 cut(s) 159, 262, 342
SsiI CCGC 1 cut(s) 565
SspMI CTAG 2 cut(s) 177, 300
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 699
StyI CCWWGG 1 cut(s) 730
TaaI ACNGT 2 cut(s) 107, 694
TaqI TCGA 3 cut(s) 363, 392, 615
TasI AATT 3 cut(s) 159, 262, 342
TatI WGTACW 3 cut(s) 102, 109, 404
TauI GCSGC 1 cut(s) 568
Tru1I TTAA 3 cut(s) 219, 518, 737
Tru9I TTAA 3 cut(s) 219, 518, 737
TscAI CASTG 4 cut(s) 112, 316, 661, 691
TseI GCWGC 5 cut(s) 226, 374, 531, 678, 712
TspDTI ATGAA 3 cut(s) 75, 144, 263
TspRI CASTG 4 cut(s) 112, 316, 661, 691
VpaK11BI GGWCC 1 cut(s) 167
XagI CCTNNNNNAGG 1 cut(s) 573
XapI RAATTY 2 cut(s) 159, 342
XbaI TCTAGA 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 332
XspI CTAG 2 cut(s) 177, 300
ZrmI AGTACT 1 cut(s) 406
Zsp2I ATGCAT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.