Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010050

Physical Location & Seq

Genomic Coordinates Reverse (-)

28897563 .. 28900888

Gene Structure 3326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1253900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGAACAAAAATTGAATATATGATCAATATATTAGGAAGCTCACAAAATAGCAGCAGCTTAACGGTGCATCGGGTGGATGACTGGGACTATTTTCAGAAAACTGGGCTGAAGGAGAAGTATCAAAAGGCTAGAGTTGAGGACGCACTTCGGAACTTGACGGACAAGATGCTTGACAAGCACAGCATGGATATCATCAAGAAGACAATGCAGATGCATGAAGATACCTTTAAATACCAGATTCGAGAGCTACACCGTCTGTACAGTGTACAAAAGATGCTAATGGAAGAACTGAAGAAAGAGATTAAACAAAATAGACTTTGGGGTCCAATAACTAGTAGTGCAGATCACATTAACCAATCCCAGTTGATTAACTGGCAGCACTCGATAACTCAAACTTCTTCAGGATATAATTTCCACCTTCAGAGATTGAGGGATGATCCAAACTCTAGAGAGCGTAGTGGAAGTTGCTCAGGAGACATTCAGAGAGTGTCAAGGGGATTTGACCTTGAATGGCCTGCCGAGGAAGACATCTCAACAAGATTCAGTACAATTGACCAATTACAAGCAGGACCAAGCTCTCACATGTCCCTCAAAAGTGAAAGTATAAGTGCAGCTAGTTATGATGAAGATAGTCAAGTGGAGCTTTCATTAAGCATCGGAAGTAACAAGAACAGGAAGAGATCAAAACCTTACCAGCCTCAGTTAGGATGTTCGGAACTGATCGAGAAAGCAAAAGAACTCGATACGCCGGCCTCATTCAAATCAGATAGAGGAGAAGATTGCAGTTATCCCACAACTCCCATGAGCAGCTCTAGTGCAACATGTGACCAAGAAAGAAAGCGGCCACATTGGCTCTTCCATGGTTTAAAGCTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

33.78

Weight (kDa)

7.71

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57340 AT5G57340
fragaria_vesca	FvH4_4g07760 FvH4_4g07760
malus_domestica	MD13G1247000.v1.1 MD16G1253900.v1.1
prunus_persica	Prupe.1G081700_v2.0.a1 Prupe.1G081700_v2.0.a1 Prupe.1G081700_v2.0.a1 Prupe.1G081700_v2.0.a1
pyrus_communis	pycom13g21790 pycom16g21510
rosa_chinensis	RchiOBHm_Chr4g0400841
rosa_laevigata	RLG00000009174
rosa_roxburghii	Rroxscaffold_5G00345690
rosa_rugosa	Rorug04G0026100
rosa_samantha	Rh4AG104200 Rh4BG099400 Rh4CG112500 Rh4DG096100
rosa_wichuraiana	Rw4G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	324
AciI	CCGC	1 cut(s)	844
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	845
AcuI	CTGAAG	4 cut(s)	131, 314, 387, 407
AfaI	GTAC	3 cut(s)	263, 270, 550
AfiI	CCNNNNNNNGG	1 cut(s)	707
AflIII	ACRYGT	2 cut(s)	585, 824
AgsI	TTSAA	3 cut(s)	17, 512, 763
AhlI	ACTAGT	1 cut(s)	335
AluBI	AGCT	8 cut(s)	42, 60, 250, 579, 617, 646, 813, 874
AluI	AGCT	8 cut(s)	42, 60, 250, 579, 617, 646, 813, 874
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	3 cut(s)	515, 753, 845
ApeKI	GCWGC	5 cut(s)	54, 57, 379, 614, 810
AspS9I	GGNCC	2 cut(s)	326, 572
AvaII	GGWCC	2 cut(s)	326, 572
BbsI	GAAGAC	2 cut(s)	209, 534
BbvI	GCAGC	5 cut(s)	66, 69, 391, 626, 822
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	471
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	5 cut(s)	132, 336, 450, 618, 816
BglI	GCCNNNNNGGC	1 cut(s)	853
BisI	GCNGC	6 cut(s)	55, 58, 380, 615, 811, 845
BlsI	GCNGC	6 cut(s)	56, 59, 381, 616, 812, 846
Bme18I	GGWCC	2 cut(s)	326, 572
BmgT120I	GGNCC	2 cut(s)	326, 572
BmiI	GGNNCC	1 cut(s)	327
BmrI	ACTGGG	3 cut(s)	94, 114, 358
BmsI	GCATC	5 cut(s)	79, 159, 204, 267, 666
BmuI	ACTGGG	3 cut(s)	94, 114, 358
BpiI	GAAGAC	2 cut(s)	209, 534
Bpu10I	CCTNAGC	1 cut(s)	472
BsaJI	CCNNGG	2 cut(s)	522, 862
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse118I	RCCGGY	1 cut(s)	751
Bse1I	ACTGG	4 cut(s)	89, 109, 364, 380
BseDI	CCNNGG	2 cut(s)	522, 862
BseGI	GGATG	3 cut(s)	85, 442, 716
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMII	CTCAG	2 cut(s)	486, 716
BseNI	ACTGG	4 cut(s)	89, 109, 364, 380
BseRI	GAGGAG	1 cut(s)	789
BseXI	GCAGC	5 cut(s)	66, 69, 391, 626, 822
BsgI	GTGCAG	2 cut(s)	363, 633
BshFI	GGCC	3 cut(s)	517, 755, 847
BsiSI	CCGG	1 cut(s)	752
BslFI	GGGAC	2 cut(s)	101, 574
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	1 cut(s)	471
BsmFI	GGGAC	2 cut(s)	101, 574
BsnI	GGCC	3 cut(s)	517, 755, 847
Bsp1407I	TGTACA	2 cut(s)	261, 268
Bsp143I	GATC	5 cut(s)	24, 346, 439, 683, 723
Bsp19I	CCATGG	1 cut(s)	862
BspACI	CCGC	1 cut(s)	844
BspANI	GGCC	3 cut(s)	517, 755, 847
BspCNI	CTCAG	2 cut(s)	485, 715
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	434
BspQI	GCTCTTC	1 cut(s)	863
BsrFI	RCCGGY	1 cut(s)	751
BsrGI	TGTACA	2 cut(s)	261, 268
BsrI	ACTGG	4 cut(s)	89, 109, 364, 380
BssAI	RCCGGY	1 cut(s)	751
BssECI	CCNNGG	2 cut(s)	522, 862
BssMI	GATC	5 cut(s)	24, 346, 439, 683, 723
BssT1I	CCWWGG	1 cut(s)	862
Bst4CI	ACNGT	3 cut(s)	67, 257, 266
Bst6I	CTCTTC	2 cut(s)	674, 863
BstAUI	TGTACA	2 cut(s)	261, 268
BstC8I	GCNNGC	2 cut(s)	519, 753
BstDEI	CTNAG	2 cut(s)	472, 702
BstDSI	CCRYGG	1 cut(s)	862
BstENI	CCTNNNNNAGG	1 cut(s)	705
BstF5I	GGATG	3 cut(s)	85, 442, 716
BstKTI	GATC	5 cut(s)	27, 349, 442, 686, 726
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	5 cut(s)	24, 346, 439, 683, 723
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 853
BstNSI	RCATGY	2 cut(s)	589, 828
BstV1I	GCAGC	5 cut(s)	66, 69, 391, 626, 822
BstV2I	GAAGAC	2 cut(s)	209, 534
BsuRI	GGCC	3 cut(s)	517, 755, 847
BtgI	CCRYGG	1 cut(s)	862
BtsCI	GGATG	3 cut(s)	85, 442, 716
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	519, 753
Cfr10I	RCCGGY	1 cut(s)	751
Cfr13I	GGNCC	2 cut(s)	326, 572
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	262, 269, 549
CviAII	CATG	6 cut(s)	187, 218, 586, 805, 825, 863
CviQI	GTAC	3 cut(s)	262, 269, 549
DdeI	CTNAG	2 cut(s)	472, 702
DpnI	GATC	5 cut(s)	26, 348, 441, 685, 725
DpnII	GATC	5 cut(s)	24, 346, 439, 683, 723
DraI	TTTAAA	2 cut(s)	232, 870
DrdI	GACNNNNNNGTC	1 cut(s)	324
DseDI	GACNNNNNNGTC	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	845
Eam1104I	CTCTTC	2 cut(s)	674, 863
EarI	CTCTTC	2 cut(s)	674, 863
Eco130I	CCWWGG	1 cut(s)	862
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	326, 572
Eco57I	CTGAAG	4 cut(s)	131, 314, 387, 407
EcoNI	CCTNNNNNAGG	1 cut(s)	705
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	862
EcoT22I	ATGCAT	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	862
FaeI	CATG	6 cut(s)	190, 221, 589, 808, 828, 866
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FaqI	GGGAC	2 cut(s)	101, 574
FatI	CATG	6 cut(s)	186, 217, 585, 804, 824, 862
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	6 cut(s)	55, 58, 380, 615, 811, 845
FokI	GGATG	3 cut(s)	92, 449, 723
Fsp4HI	GCNGC	6 cut(s)	55, 58, 380, 615, 811, 845
FspBI	CTAG	5 cut(s)	132, 336, 450, 618, 816
GluI	GCNGC	6 cut(s)	55, 58, 380, 615, 811, 845
HaeIII	GGCC	3 cut(s)	517, 755, 847
HapII	CCGG	1 cut(s)	752
HgaI	GACGC	1 cut(s)	152
Hin1II	CATG	6 cut(s)	190, 221, 589, 808, 828, 866
HinfI	GANTC	2 cut(s)	241, 543
HpaII	CCGG	1 cut(s)	752
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	7 cut(s)	99, 153, 426, 486, 662, 718, 769
Hpy188III	TCNNGA	6 cut(s)	199, 245, 405, 450, 474, 727
Hpy8I	GTNNAC	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	106, 431
HpyCH4III	ACNGT	3 cut(s)	67, 257, 266
HpyCH4V	TGCA	7 cut(s)	70, 211, 217, 344, 614, 786, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 853
HpyF3I	CTNAG	2 cut(s)	472, 702
Hsp92II	CATG	6 cut(s)	190, 221, 589, 808, 828, 866
KroI	GCCGGC	1 cut(s)	751
KroNI	GCCGGC	1 cut(s)	753
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	5 cut(s)	24, 346, 439, 683, 723
LguI	GCTCTTC	1 cut(s)	863
LmnI	GCTCC	1 cut(s)	643
Lsp1109I	GCAGC	5 cut(s)	66, 69, 391, 626, 822
LweI	GCATC	5 cut(s)	79, 159, 204, 267, 666
MaeI	CTAG	5 cut(s)	132, 336, 450, 618, 816
MaeIII	GTNAC	2 cut(s)	665, 827
MalI	GATC	5 cut(s)	26, 348, 441, 685, 725
MboI	GATC	5 cut(s)	24, 346, 439, 683, 723
MfeI	CAATTG	1 cut(s)	552
MluCI	AATT	4 cut(s)	12, 412, 552, 560
MnlI	CCTC	7 cut(s)	133, 426, 517, 602, 711, 766, 767
Mph1103I	ATGCAT	1 cut(s)	219
MroNI	GCCGGC	1 cut(s)	751
MseI	TTAA	7 cut(s)	62, 231, 306, 354, 372, 653, 869
MspI	CCGG	1 cut(s)	752
MunI	CAATTG	1 cut(s)	552
MwoI	GCNNNNNNNGC	2 cut(s)	178, 853
NaeI	GCCGGC	1 cut(s)	753
NcoI	CCATGG	1 cut(s)	862
NdeII	GATC	5 cut(s)	24, 346, 439, 683, 723
NgoMIV	GCCGGC	1 cut(s)	751
NlaIII	CATG	6 cut(s)	190, 221, 589, 808, 828, 866
NlaIV	GGNNCC	1 cut(s)	327
NmeAIII	GCCGAG	1 cut(s)	547
NmuCI	GTSAC	1 cut(s)	827
NsiI	ATGCAT	1 cut(s)	219
NspI	RCATGY	2 cut(s)	589, 828
PciI	ACATGT	2 cut(s)	585, 824
PciSI	GCTCTTC	1 cut(s)	863
PdiI	GCCGGC	1 cut(s)	753
PfeI	GAWTC	2 cut(s)	241, 543
PkrI	GCNGC	6 cut(s)	56, 59, 381, 616, 812, 846
PscI	ACATGT	2 cut(s)	585, 824
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	2 cut(s)	326, 572
RsaI	GTAC	3 cut(s)	263, 270, 550
RsaNI	GTAC	3 cut(s)	262, 269, 549
SapI	GCTCTTC	1 cut(s)	863
SaqAI	TTAA	7 cut(s)	62, 231, 306, 354, 372, 653, 869
SatI	GCNGC	6 cut(s)	55, 58, 380, 615, 811, 845
Sau3AI	GATC	5 cut(s)	24, 346, 439, 683, 723
Sau96I	GGNCC	2 cut(s)	326, 572
SfaNI	GCATC	5 cut(s)	79, 159, 204, 267, 666
SinI	GGWCC	2 cut(s)	326, 572
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	4 cut(s)	12, 412, 552, 560
SsiI	CCGC	1 cut(s)	844
SspMI	CTAG	5 cut(s)	132, 336, 450, 618, 816
StyI	CCWWGG	1 cut(s)	862
TaaI	ACNGT	3 cut(s)	67, 257, 266
TaqI	TCGA	4 cut(s)	244, 386, 726, 744
TasI	AATT	4 cut(s)	12, 412, 552, 560
TatI	WGTACW	3 cut(s)	261, 268, 548
TauI	GCSGC	1 cut(s)	847
TfiI	GAWTC	2 cut(s)	241, 543
Tru1I	TTAA	7 cut(s)	62, 231, 306, 354, 372, 653, 869
Tru9I	TTAA	7 cut(s)	62, 231, 306, 354, 372, 653, 869
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	827
TseI	GCWGC	5 cut(s)	54, 57, 379, 614, 810
Tsp45I	GTSAC	1 cut(s)	827
TspDTI	ATGAA	3 cut(s)	234, 639, 642
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	1 cut(s)	271
VpaK11BI	GGWCC	2 cut(s)	326, 572
XagI	CCTNNNNNAGG	1 cut(s)	705
XbaI	TCTAGA	1 cut(s)	449
XceI	RCATGY	2 cut(s)	589, 828
XspI	CTAG	5 cut(s)	132, 336, 450, 618, 816
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.