Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014583

Physical Location & Seq

Genomic Coordinates Forward (+)

7446736 .. 7449954

Gene Structure 3219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2541 bp

ATGGAAGGCACTCTCTTCCCTAGTAGACCAGTCCTTCCCATTCAAACCAACAGACCAATACAACCAAGCCCTCCTGTGAAATTCAATGCAACCACTCTGCCACCTCTTCCCCAAAACCCATCTTCATTTCCTATAGACTCTCTTCTCCACCACCTCCTCAACATCTCTTCACCTCCCAACACTCCCCACAACCTTAAACCCTTAAACCCACCACACCAAACCAATGACACTTTCCCTTCTCTTCATATTTCAGCGGATTCAACTCCGAAACAGCACCAGTTCAAGAAACCCACTTCGGTTTTGGTCCCAAGTTTTGAGGACAAGGCCAGAACTGAAGATGGGCTTATTGACTTCTTGACAATAAAGGGTAAGATGATGTTCAATTCCATTGTAGAGTCACCATTGGATTGTGTGAATGAGTTATGTGATTCGGCTAAGTTTGAGTTGCTTGAAGTTGATTTGATTAGTCTGTTGAAGGCATTGGACCTTTCTGGCAATTGGGAAAGAGCCCTTTTAGTTTTTGAATGGATATTGCTGAACTTGAATGCCGAAAGCTTGAAATTGGATAAGCAGATTATTGAACTGATGGTTAGAATTTTGGGTAGACAGTCACAGCATACTATTGCGTCTAAGCTGTTTGATGTAATTCCCATTGAGGAGTACTCACTGGATGTTCGAGCTTATACCACTGTCATTCATGCATATTCTCGCACCGGCAAGTACGAAAGAGCAATCGACATGTTTGAGAAATTGATGGAGATGGGTCTGTCGCCAACTTTGGTTACTTACAATGTAATGCTTGATGTTTATGGGAAGAAGGGTCGGTCTTGGAATAAAATTTTGGGCCTGTTGGATGAGATGAAGAGCAAAGGATTGGAGTTTGATGATTTTACTTGTAGTACAGTGATATCTGCTTGTGGAAGAGAGGGTTTGCTGGATGAGGCAAAAGAGTTCTTTGCCGGGTTGAAGTCACAAGGGTTTGTACCAGGAACAGTTACCTATAATTCTTTGCTACAAGTTTTTGGCAAGGCGGGGGTGTTCATGGAGGCATTGAGCATATTGAAAGAAATGGAGGATAATAACTGCCCACCTGATGCTGTTACTTATAATGAGCTTGTGGCAGCTTATGTGAGGGCAGGATTTGCCGAGGAAGGTGCATCTGTGTTAAAAACAATGACCCAAAAAGGAACTATGCCGAACGCGGTTACATACACTACCGTGATAAATGCGTACGGAAGAGCAGGAAAGGAGGAAGAAGCTCTAAGGTTGTTCAACCAAATGAAAGAGACTGGCTGTGTTCCTAATGTTTGTACCTACAATGCTGTCCTTGCAATGCTTGGAAAGAAGTTGCGGCCAGAGGAGATGATAAAAGTACTTTGTGATATGAAGTCGAGTGGATGTGCCCCTAATCGGATCACATGGAATACGATGCTTGCCATGTGTGGTGATAAGGGCAAGCACAAGTATGTGAATCAGGTGCTTCGAGAAATGAAGAATTGTGGTTTTGAGCCTGACAGAGACACCTTCAATACCTTGATCAGTGCATATGGGCGGTGTGGGTCAGACATAGATGCTGCACAGATGCATGATGAGATGATTAGAGCTGGATTTACTCCATGTATTTCAACTTACAATGCACTTCTAAATGCTCTGGCTCGGCGAGGGGACTGGAAAGCAGCAGAATCTGTCATTCTAGACATGAAGAATAAGGGTTACAAGCCTAATGAAACCTCATATTCATTGATGATCAACTGCCACGCAAAAGGAGGGAATGTGAGGGGGATAGAGAGAATTGAGAATGAAATCTATGAGGGTCATATTTTTCCTAGCTGGATTCTTTTGAGAACACTTGTTCTTGCAAACTTCAAGTGTAGAGCGCTGAGGGGTATGGAGAGGGCATTCCAGCAACTGCAGATTAATGGCTATAAACCTGATTTGGTCCTTTTCAATTCTATGCTTTCCATTTATGCTCGAAAGAACATGTACGACCGGGCCAATGACATGCTGCACATGATTCGTGAAAACGGCCTTCAGCCAGATCTTGTAACATACAATAGCTTGATGGATATGTATGCCAGAAAGGGGGAGTGTTGGAAAGCAGAAGAAATTCTCCTGTCCTTGCAAAAATCTGGTGGGAAACCGGACCTTGTTTCTTATAACACTGTCATCAAAGGATTTTGCAGGCAAGGGCACATGCAAGAGGCTATAAGAATTCTCTCTGAGATGACAACAAGAGGGATTCGGCCGTGTATTTTTACCTACAATACTTTTGTCACTGGCTATTCAGGGCGAGGAATGTTCTCGGAAGTAGATGAAGTGATTAGCTATATGACTCAGAACAATTGTAAACCTAATGAGTTAACCTACAAGATTGTGGTGGATGGTTATTGTAAAGCAAGGAAGTTTGAAGAAGCTATGGACTTTCTGTCAAAGATCAAGGAGATTGATAATTCTTTTGATGATGGATATGTTGAAAGACTTTCTTCTCGCATTAGGGGCAATTGGGAAGTGTTCGAGAACTTAAGTAATCCAAGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

847

Amino Acids

95.46

Weight (kDa)

6.45

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	220 - 272	4.4e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	224 - 270	1.2e-11	PPR repeat family
PPR	PF01535	227 - 256	3.6e-06	PPR repeat
PPR_2	PF13041	258 - 307	2.8e-11	PPR repeat family
PPR_long	PF17177	281 - 418	2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	283 - 343	3.1e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	298 - 375	3.5e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	329 - 376	3.7e-12	PPR repeat family
PPR	PF01535	332 - 362	1.9e-06	PPR repeat
PPR_3	PF13812	352 - 412	1.2e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	364 - 411	3.8e-10	PPR repeat family
TPR_24	PF23276	380 - 464	1.3e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	387 - 448	1.4e-16	Pentatricopeptide repeat domain
PPR_1	PF12854	395 - 428	1e-09	PPR repeat
PPR_2	PF13041	399 - 446	6.9e-16	PPR repeat family
PPR	PF01535	402 - 432	1.7e-09	PPR repeat
PPR_long	PF17177	410 - 556	2.8e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	434 - 481	8.6e-12	PPR repeat family
PPR_2	PF13041	469 - 516	8.3e-11	PPR repeat family
PPR_3	PF13812	529 - 585	1.8e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	539 - 588	1.4e-13	PPR repeat family
PPR	PF01535	542 - 571	1e-05	PPR repeat
PPR_3	PF13812	634 - 691	3.4e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	644 - 693	2.8e-10	PPR repeat family
PPR_3	PF13812	704 - 760	2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	711 - 743	9.2e-12	PPR repeat
PPR_2	PF13041	714 - 749	9.6e-11	PPR repeat family
PPR	PF01535	717 - 747	5e-08	PPR repeat
PPR_2	PF13041	749 - 798	8.3e-13	PPR repeat family
PPR_1	PF12854	781 - 811	5.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18940
fragaria_vesca	FvH4_4g07880
malus_domestica	MD13G1249100.v1.1 MD16G1255600.v1.1
prunus_persica	Prupe.3G037500_v2.0.a1
pyrus_communis	pycom13g21970 pycom16g21670
rosa_chinensis	RchiOBHm_Chr4g0401161
rosa_laevigata	RLG00000009158
rosa_multiflora	Rmu_sc0003257.1_g000006
rosa_roxburghii	Rroxscaffold_5G00346010
rosa_rugosa	Rorug04G0028400
rosa_samantha	Rh4AG105900 Rh4BG100900 Rh4CG114600 Rh4DG098100
rosa_wichuraiana	Rw4G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1107, 2157
AccI	GTMKAC	2 cut(s)	25, 604
AccII	CGCG	1 cut(s)	1202
AciI	CCGC	5 cut(s)	254, 1031, 1202, 1351, 1552
AclWI	GGATC	1 cut(s)	1421
AcoI	YGGCCR	2 cut(s)	1352, 2243
AcsI	RAATTY	5 cut(s)	80, 594, 837, 2106, 2211
AcuI	CTGAAG	2 cut(s)	354, 2015
AfaI	GTAC	8 cut(s)	662, 722, 901, 984, 1232, 1312, 1374, 1985
AfeI	AGCGCT	1 cut(s)	1878
AfiI	CCNNNNNNNGG	2 cut(s)	1410, 2082
AflII	CTTAAG	1 cut(s)	2521
AflIII	ACRYGT	2 cut(s)	738, 1980
AhdI	GACNNNNNGTC	1 cut(s)	2425
AjnI	CCWGG	1 cut(s)	985
AjuI	GAANNNNNNNTTGG	4 cut(s)	215, 247, 824, 856
AleI	CACNNNNGTG	1 cut(s)	1217
Alw26I	GTCTC	2 cut(s)	1280, 1512
AlwI	GGATC	1 cut(s)	1421
AlwNI	CAGNNNCTG	2 cut(s)	1685, 1909
Aor51HI	AGCGCT	1 cut(s)	1878
AoxI	GGCC	6 cut(s)	324, 844, 1352, 1992, 2026, 2243
ApeKI	GCWGC	4 cut(s)	1121, 1574, 1676, 2005
ApoI	RAATTY	5 cut(s)	80, 594, 837, 2106, 2211
AseI	ATTAAT	1 cut(s)	1917
Asp700I	GAANNNNTTC	1 cut(s)	2106
AspLEI	GCGC	1 cut(s)	1879
AspS9I	GGNCC	6 cut(s)	304, 484, 844, 1939, 1992, 2143
AsuC2I	CCSGG	2 cut(s)	961, 1991
AsuHPI	GGTGA	3 cut(s)	162, 390, 1457
AvaII	GGWCC	4 cut(s)	304, 484, 1939, 2143
BaeGI	GKGCMC	2 cut(s)	1405, 2193
BanII	GRGCYC	1 cut(s)	511
BbvCI	CCTCAGC	1 cut(s)	1880
BbvI	GCAGC	4 cut(s)	1133, 1561, 1688, 1992
BccI	CCATC	8 cut(s)	127, 332, 580, 748, 754, 2056, 2375, 2456
BceAI	ACGGC	2 cut(s)	2041, 2230
BcgI	CGANNNNNNTGC	4 cut(s)	1136, 1170, 1997, 2031
BciT130I	CCWGG	1 cut(s)	987
BclI	TGATCA	2 cut(s)	1536, 1746
BcnI	CCSGG	2 cut(s)	961, 1991
BcoDI	GTCTC	2 cut(s)	1280, 1512
BfaI	CTAG	3 cut(s)	21, 1694, 1827
BfmI	CTRYAG	2 cut(s)	132, 1910
BfoI	RGCGCY	1 cut(s)	1880
BfrI	CTTAAG	1 cut(s)	2521
BglII	AGATCT	1 cut(s)	2038
BisI	GCNGC	5 cut(s)	1122, 1352, 1575, 1677, 2006
BlsI	GCNGC	5 cut(s)	1123, 1353, 1576, 1678, 2007
BmcAI	AGTACT	2 cut(s)	662, 1374
Bme1390I	CCNGG	3 cut(s)	961, 987, 1991
Bme18I	GGWCC	4 cut(s)	304, 484, 1939, 2143
BmeRI	GACNNNNNGTC	1 cut(s)	2425
BmgT120I	GGNCC	6 cut(s)	304, 484, 844, 1939, 1992, 2143
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	3 cut(s)	961, 987, 1991
BmsI	GCATC	5 cut(s)	1084, 1166, 1419, 1561, 1572
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
Bpu10I	CCTNAGC	1 cut(s)	1880
BpuMI	CCSGG	2 cut(s)	961, 1991
BsaJI	CCNNGG	1 cut(s)	1146
BsaWI	WCCGGW	1 cut(s)	2140
BsaXI	ACNNNNNCTCC	2 cut(s)	1758, 1788
Bsc4I	CCNNNNNNNGG	2 cut(s)	1410, 2082
Bse118I	RCCGGY	1 cut(s)	713
Bse1I	ACTGG	6 cut(s)	29, 277, 672, 1294, 1673, 2281
Bse3DI	GCAATG	1 cut(s)	1338
BseBI	CCWGG	1 cut(s)	987
BseDI	CCNNGG	1 cut(s)	1146
BseGI	GGATG	5 cut(s)	676, 859, 943, 1403, 2386
BseLI	CCNNNNNNNGG	2 cut(s)	1410, 2082
BseMI	GCAATG	1 cut(s)	1338
BseMII	CTCAG	3 cut(s)	1871, 2211, 2348
BseNI	ACTGG	6 cut(s)	29, 277, 672, 1294, 1673, 2281
BseRI	GAGGAG	3 cut(s)	146, 671, 1373
BseSI	GKGCMC	2 cut(s)	1405, 2193
BseX3I	CGGCCG	1 cut(s)	2243
BseXI	GCAGC	4 cut(s)	1133, 1561, 1688, 1992
BsgI	GTGCAG	2 cut(s)	1560, 1991
Bsh1236I	CGCG	1 cut(s)	1202
Bsh1285I	CGRYCG	2 cut(s)	1990, 2246
BshFI	GGCC	6 cut(s)	326, 846, 1354, 1994, 2028, 2245
BsiEI	CGRYCG	2 cut(s)	1990, 2246
BsiSI	CCGG	4 cut(s)	714, 960, 1990, 2141
BsiWI	CGTACG	1 cut(s)	1230
BslFI	GGGAC	2 cut(s)	290, 1679
BslI	CCNNNNNNNGG	2 cut(s)	1410, 2082
BsmAI	GTCTC	2 cut(s)	1280, 1512
BsmFI	GGGAC	2 cut(s)	290, 1679
BsmI	GAATGC	2 cut(s)	550, 1898
BsnI	GGCC	6 cut(s)	326, 846, 1354, 1994, 2028, 2245
Bsp1286I	GDGCHC	3 cut(s)	511, 1405, 2193
Bsp143I	GATC	5 cut(s)	1413, 1536, 1746, 2038, 2433
BspACI	CCGC	5 cut(s)	254, 1031, 1202, 1351, 1552
BspANI	GGCC	6 cut(s)	326, 846, 1354, 1994, 2028, 2245
BspCNI	CTCAG	3 cut(s)	1872, 2212, 2347
BspFNI	CGCG	1 cut(s)	1202
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	1914
BspPI	GGATC	1 cut(s)	1421
BspQI	GCTCTTC	2 cut(s)	857, 1231
BspTI	CTTAAG	1 cut(s)	2521
BsrDI	GCAATG	1 cut(s)	1338
BsrFI	RCCGGY	1 cut(s)	713
BsrI	ACTGG	6 cut(s)	29, 277, 672, 1294, 1673, 2281
BssAI	RCCGGY	1 cut(s)	713
BssECI	CCNNGG	1 cut(s)	1146
BssMI	GATC	5 cut(s)	1413, 1536, 1746, 2038, 2433
Bst2UI	CCWGG	1 cut(s)	987
Bst4CI	ACNGT	6 cut(s)	609, 691, 904, 994, 1219, 2164
Bst6I	CTCTTC	8 cut(s)	20, 111, 147, 172, 246, 857, 916, 1231
BstAFI	CTTAAG	1 cut(s)	2521
BstAPI	GCANNNNNTGC	1 cut(s)	1142
BstC8I	GCNNGC	3 cut(s)	1434, 1457, 2183
BstDEI	CTNAG	6 cut(s)	435, 630, 1262, 1880, 2220, 2334
BstF5I	GGATG	5 cut(s)	676, 859, 943, 1403, 2386
BstFNI	CGCG	1 cut(s)	1202
BstH2I	RGCGCY	1 cut(s)	1880
BstHHI	GCGC	1 cut(s)	1879
BstKTI	GATC	5 cut(s)	1416, 1539, 1749, 2041, 2436
BstMAI	GTCTC	2 cut(s)	1280, 1512
BstMBI	GATC	5 cut(s)	1413, 1536, 1746, 2038, 2433
BstMCI	CGRYCG	2 cut(s)	1990, 2246
BstMWI	GCNNNNNNNGC	3 cut(s)	1142, 1328, 2496
BstNI	CCWGG	1 cut(s)	987
BstNSI	RCATGY	4 cut(s)	742, 1984, 2005, 2197
BstSCI	CCNGG	3 cut(s)	959, 985, 1989
BstSFI	CTRYAG	2 cut(s)	132, 1910
BstSLI	GKGCMC	2 cut(s)	1405, 2193
BstUI	CGCG	1 cut(s)	1202
BstV1I	GCAGC	4 cut(s)	1133, 1561, 1688, 1992
BstX2I	RGATCY	1 cut(s)	2038
BstYI	RGATCY	1 cut(s)	2038
BstZI	CGGCCG	1 cut(s)	2243
BsuRI	GGCC	6 cut(s)	326, 846, 1354, 1994, 2028, 2245
BtsCI	GGATG	5 cut(s)	676, 859, 943, 1403, 2386
BtsIMutI	CAGTG	6 cut(s)	665, 687, 909, 1546, 2160, 2274
Cac8I	GCNNGC	3 cut(s)	1434, 1457, 2183
CaiI	CAGNNNCTG	2 cut(s)	1685, 1909
CfoI	GCGC	1 cut(s)	1879
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	6 cut(s)	304, 484, 844, 1939, 1992, 2143
CseI	GACGC	1 cut(s)	615
Csp6I	GTAC	8 cut(s)	661, 721, 900, 983, 1231, 1311, 1373, 1984
CviQI	GTAC	8 cut(s)	661, 721, 900, 983, 1231, 1311, 1373, 1984
DdeI	CTNAG	6 cut(s)	435, 630, 1262, 1880, 2220, 2334
DpnI	GATC	5 cut(s)	1415, 1538, 1748, 2040, 2435
DpnII	GATC	5 cut(s)	1413, 1536, 1746, 2038, 2433
DriI	GACNNNNNGTC	1 cut(s)	2425
EaeI	YGGCCR	2 cut(s)	1352, 2243
EagI	CGGCCG	1 cut(s)	2243
Eam1104I	CTCTTC	8 cut(s)	20, 111, 147, 172, 246, 857, 916, 1231
Eam1105I	GACNNNNNGTC	1 cut(s)	2425
EarI	CTCTTC	8 cut(s)	20, 111, 147, 172, 246, 857, 916, 1231
EclXI	CGGCCG	1 cut(s)	2243
Eco24I	GRGCYC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	909
Eco47I	GGWCC	4 cut(s)	304, 484, 1939, 2143
Eco47III	AGCGCT	1 cut(s)	1878
Eco52I	CGGCCG	1 cut(s)	2243
Eco57I	CTGAAG	2 cut(s)	354, 2015
EcoRI	GAATTC	1 cut(s)	2211
EcoRII	CCWGG	1 cut(s)	985
EcoRV	GATATC	1 cut(s)	909
EcoT22I	ATGCAT	2 cut(s)	703, 1587
EcoT38I	GRGCYC	1 cut(s)	511
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 2467, 2499
FaqI	GGGAC	2 cut(s)	290, 1679
FauI	CCCGC	1 cut(s)	1024
FauNDI	CATATG	1 cut(s)	1546
FbaI	TGATCA	2 cut(s)	1536, 1746
FblI	GTMKAC	2 cut(s)	25, 604
Fnu4HI	GCNGC	5 cut(s)	1122, 1352, 1575, 1677, 2006
FokI	GGATG	5 cut(s)	683, 866, 950, 1410, 2393
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	5 cut(s)	1122, 1352, 1575, 1677, 2006
FspBI	CTAG	3 cut(s)	21, 1694, 1827
GlaI	GCGC	1 cut(s)	1878
GluI	GCNGC	5 cut(s)	1122, 1352, 1575, 1677, 2006
HaeII	RGCGCY	1 cut(s)	1880
HaeIII	GGCC	6 cut(s)	326, 846, 1354, 1994, 2028, 2245
HapII	CCGG	4 cut(s)	714, 960, 1990, 2141
HgaI	GACGC	1 cut(s)	615
HhaI	GCGC	1 cut(s)	1879
Hin6I	GCGC	1 cut(s)	1877
HinP1I	GCGC	1 cut(s)	1877
HincII	GTYRAC	1 cut(s)	2361
HindII	GTYRAC	1 cut(s)	2361
HindIII	AAGCTT	1 cut(s)	553
HpaI	GTTAAC	1 cut(s)	2361
HpaII	CCGG	4 cut(s)	714, 960, 1990, 2141
HphI	GGTGA	3 cut(s)	162, 390, 1457
Hpy166II	GTNNAC	4 cut(s)	26, 605, 2348, 2361
Hpy188I	TCNGA	6 cut(s)	267, 1413, 1564, 2221, 2305, 2337
Hpy188III	TCNNGA	6 cut(s)	283, 355, 1484, 1694, 2018, 2515
Hpy8I	GTNNAC	4 cut(s)	26, 605, 2348, 2361
HpyAV	CCTTC	7 cut(s)	44, 246, 469, 811, 1145, 1534, 2039
HpyCH4III	ACNGT	6 cut(s)	609, 691, 904, 994, 1219, 2164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1142, 1328, 2496
HpyF3I	CTNAG	6 cut(s)	435, 630, 1262, 1880, 2220, 2334
HspAI	GCGC	1 cut(s)	1877
Ksp22I	TGATCA	2 cut(s)	1536, 1746
KspAI	GTTAAC	1 cut(s)	2361
Kzo9I	GATC	5 cut(s)	1413, 1536, 1746, 2038, 2433
LguI	GCTCTTC	2 cut(s)	857, 1231
Lsp1109I	GCAGC	4 cut(s)	1133, 1561, 1688, 1992
LweI	GCATC	5 cut(s)	1084, 1166, 1419, 1561, 1572
MaeI	CTAG	3 cut(s)	21, 1694, 1827
MalI	GATC	5 cut(s)	1415, 1538, 1748, 2040, 2435
MboI	GATC	5 cut(s)	1413, 1536, 1746, 2038, 2433
MfeI	CAATTG	3 cut(s)	496, 2341, 2500
MflI	RGATCY	1 cut(s)	2038
MhlI	GDGCHC	3 cut(s)	511, 1405, 2193
MlyI	GAGTC	3 cut(s)	131, 404, 2326
MmeI	TCCRAC	2 cut(s)	831, 2072
Mph1103I	ATGCAT	2 cut(s)	703, 1587
MroXI	GAANNNNTTC	1 cut(s)	2106
MseI	TTAA	6 cut(s)	195, 203, 1166, 1917, 2360, 2522
MslI	CAYNNNNRTG	2 cut(s)	1217, 1464
MspA1I	CMGCKG	1 cut(s)	254
MspCI	CTTAAG	1 cut(s)	2521
MspI	CCGG	4 cut(s)	714, 960, 1990, 2141
MspR9I	CCNGG	3 cut(s)	961, 987, 1991
MunI	CAATTG	3 cut(s)	496, 2341, 2500
Mva1269I	GAATGC	2 cut(s)	550, 1898
MvaI	CCWGG	1 cut(s)	987
MvnI	CGCG	1 cut(s)	1202
MwoI	GCNNNNNNNGC	3 cut(s)	1142, 1328, 2496
NciI	CCSGG	2 cut(s)	961, 1991
NdeI	CATATG	1 cut(s)	1546
NdeII	GATC	5 cut(s)	1413, 1536, 1746, 2038, 2433
NlaIV	GGNNCC	1 cut(s)	306
NmeAIII	GCCGAG	2 cut(s)	1171, 1636
NmuCI	GTSAC	4 cut(s)	396, 609, 969, 2272
NsiI	ATGCAT	2 cut(s)	703, 1587
NspI	RCATGY	4 cut(s)	742, 1984, 2005, 2197
OliI	CACNNNNGTG	1 cut(s)	1217
PciI	ACATGT	2 cut(s)	738, 1980
PciSI	GCTCTTC	2 cut(s)	857, 1231
PctI	GAATGC	2 cut(s)	550, 1898
PdmI	GAANNNNTTC	1 cut(s)	2106
PfeI	GAWTC	7 cut(s)	257, 428, 1471, 1682, 1834, 2014, 2239
Pfl23II	CGTACG	1 cut(s)	1230
PkrI	GCNGC	5 cut(s)	1123, 1353, 1576, 1678, 2007
PleI	GAGTC	3 cut(s)	131, 403, 2326
PpsI	GAGTC	3 cut(s)	131, 403, 2326
PscI	ACATGT	2 cut(s)	738, 1980
PshBI	ATTAAT	1 cut(s)	1917
PsiI	TTATAA	2 cut(s)	1107, 2157
Psp6I	CCWGG	1 cut(s)	985
PspGI	CCWGG	1 cut(s)	985
PspLI	CGTACG	1 cut(s)	1230
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	6 cut(s)	304, 484, 844, 1939, 1992, 2143
PstI	CTGCAG	1 cut(s)	1914
PstNI	CAGNNNCTG	2 cut(s)	1685, 1909
PsuI	RGATCY	1 cut(s)	2038
RsaI	GTAC	8 cut(s)	662, 722, 901, 984, 1232, 1312, 1374, 1985
RsaNI	GTAC	8 cut(s)	661, 721, 900, 983, 1231, 1311, 1373, 1984
RseI	CAYNNNNRTG	2 cut(s)	1217, 1464
SapI	GCTCTTC	2 cut(s)	857, 1231
SaqAI	TTAA	6 cut(s)	195, 203, 1166, 1917, 2360, 2522
SatI	GCNGC	5 cut(s)	1122, 1352, 1575, 1677, 2006
Sau3AI	GATC	5 cut(s)	1413, 1536, 1746, 2038, 2433
Sau96I	GGNCC	6 cut(s)	304, 484, 844, 1939, 1992, 2143
ScaI	AGTACT	2 cut(s)	662, 1374
SchI	GAGTC	3 cut(s)	131, 404, 2326
ScrFI	CCNGG	3 cut(s)	961, 987, 1991
SduI	GDGCHC	3 cut(s)	511, 1405, 2193
SfaNI	GCATC	5 cut(s)	1084, 1166, 1419, 1561, 1572
SfcI	CTRYAG	2 cut(s)	132, 1910
SinI	GGWCC	4 cut(s)	304, 484, 1939, 2143
SmiMI	CAYNNNNRTG	2 cut(s)	1217, 1464
SmlI	CTYRAG	1 cut(s)	2521
SmoI	CTYRAG	1 cut(s)	2521
SsiI	CCGC	5 cut(s)	254, 1031, 1202, 1351, 1552
SspMI	CTAG	3 cut(s)	21, 1694, 1827
StyD4I	CCNGG	3 cut(s)	959, 985, 1989
TaaI	ACNGT	6 cut(s)	609, 691, 904, 994, 1219, 2164
TaqI	TCGA	6 cut(s)	676, 735, 1391, 1483, 1972, 2514
TaqII	GACCGA	1 cut(s)	813
TatI	WGTACW	3 cut(s)	660, 899, 1372
TauI	GCSGC	1 cut(s)	1354
TfiI	GAWTC	7 cut(s)	257, 428, 1471, 1682, 1834, 2014, 2239
Tru1I	TTAA	6 cut(s)	195, 203, 1166, 1917, 2360, 2522
Tru9I	TTAA	6 cut(s)	195, 203, 1166, 1917, 2360, 2522
TscAI	CASTG	6 cut(s)	672, 694, 909, 1546, 2167, 2281
TseFI	GTSAC	4 cut(s)	396, 609, 969, 2272
TseI	GCWGC	4 cut(s)	1121, 1574, 1676, 2005
Tsp45I	GTSAC	4 cut(s)	396, 609, 969, 2272
TspGWI	ACGGA	1 cut(s)	1248
TspRI	CASTG	6 cut(s)	672, 694, 909, 1546, 2167, 2281
Vha464I	CTTAAG	1 cut(s)	2521
VpaK11BI	GGWCC	4 cut(s)	304, 484, 1939, 2143
VspI	ATTAAT	1 cut(s)	1917
XapI	RAATTY	5 cut(s)	80, 594, 837, 2106, 2211
XbaI	TCTAGA	1 cut(s)	1693
XceI	RCATGY	4 cut(s)	742, 1984, 2005, 2197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmiI	GTMKAC	2 cut(s)	25, 604
XmnI	GAANNNNTTC	1 cut(s)	2106
XspI	CTAG	3 cut(s)	21, 1694, 1827
ZrmI	AGTACT	2 cut(s)	662, 1374
Zsp2I	ATGCAT	2 cut(s)	703, 1587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.