Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0014583

Physical Location & Seq

Genomic Coordinates Forward (+)

21782623 .. 21786138

Gene Structure 3516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG114600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2541 bp

ATGGAAGGTACCCTCTTCCCAAGTAGACCAGTCCTTCCCATTCAAACCAGCAGACCAATACAACCAAGCCCTCCGGTGAAATTCAATGCAACCACTTTGCCACCCCTTCCCCAAACCCCATCTTCATTTCCTATTGACTCTCTTCTCCAGCACCTTCTCAACATCTCTTCTCCTCCTAACACTCCCCACAACCTTAAACCCTTAAACCCACCACACCAAACCAATGCCGTTTTCCCTTCTCTTCAAATTTCAGTGGATTCGACTCCGAAACAGCGCCAATTGAAGAAACCCACCTCGGTTTTAGTCCACAACTTTGAGGACAAGGCCAAACCAGAAGATGGGCTTATCGACTTCTTGACAGTAAAGGGTAAGATGATGTTCAATTCCATTGTAGAGTCGCCTTTGCATTGTGTGAATGAATTATGTGATTCTGCTAAGTTTGAGTTGCTTGAAGTTGATTTGATTAGTCTGTTGAAGGCATTAGACCTTTCTGGCAATTGGGAAAGAGCCCTTTTGTTGTTTGAATGGATTATGCTGAACTTACATTCTGAAAGTTTGAAATTGGATAAGCAGATCATTGAACTAATGGTTAGAATTTTGGGTAGAGAGTCACAGCATACTATTGCATCCAAGCTGTTTGAGGTAATTCCCATAGAGGAATACTCGCTGGATGTTCGAGCTTATACCACTGTCATTCATGCATATTCTCGCACTGGCAAGTACGAACGAGCAATTGACTTGTTTGAGAAGTTGATGGAGATGGGTCTTTCGCCGACTTTGGTCACTTACAATGTCATGCTTGATGTTTATGGGAAGAAGGGTCGATCTTGGAATAAAATCTTAGGCCTCTTGGATGAAATGAAGAGCAAAGGATTTGAATTTGATGATTTTACTTGTAGTACAGTGATATCTGCTTGTGGAAGAGAGGGTTTGTTGGATGAGGCAAAAGAGTTCTTTGCCGGATTGAAGTCACAAGGGTATGTACCAGGAACAGTTACCTATAATTCTTTGCTACAAGTTTTCGGCAAGGCGGGGGTGTTCATGGAGGCATTGAGCATATTGAAAGAAATGGAGGATAACAACTGCCCACCTGATGCTGTTACTTACAATGAGCTTGTGGCAGCTTATGTGAGGGCAGGATTCGCCGAGGAGGGTGCATCTGTGTTAAAAACAATGACCCAAAAAGGAACTATGCCAAACGCTGTTACATACACTACCGTGATAAATGCATATGGAAGAGCAGGAAAGGAGGAAGAAGCTCTAAGGTTGTTCAACCAAATGAAGGAGACTGGCTGTGTTCCTAATGTTTGTACCTACAATGCTGTCCTTGCAATGCTTGGAAAGAAGTCACGGCCAGAGGAGATGATAAAAATACTTTGTGATATGAAGTCGAGTGGATGTGCCCCTAACCGGATTACATGGAATACAATGCTTGCCATGTGTGGTGATAAGGGCAAGCACAAGTATGTGAATCAGGTGCTTCGAGAAATGAAGAATTGTGGTTTTGAGCCTGACAGAGACACCTTCAATACCTTGATCAGTGCATATGGACGGTGTGGGTCAGATATAGATGCTGCACAGATGCACGATGAGATGATTAGAGCTGGATTTACCCCATGCATTACAACTTACAATGCACTTCTAAATGCTCTGGCTCGGCGAGGGGACTGGAAAGCAGCTGAATCTGTTATTCTAGACATGAAGAATAAGGGTTTTAAGCCTAATGAAACCTCATATTCATTGATGATCAACTGCCATGCAAAGGGAGGGAATGTGAGGGGGATAGAGAGAATAGAGAAAGAAATCTATGAGGGTCATATTTTTCCTAGCTGGATTCTTTTGAGAACACTTGTTCTTGCAAACTTCAAGTGTAGAGCACTAAGGGGTATGGAGAGGGCATTCCAGCAATTGCAGATTAAAGGATATAAACCTGATTTGGTCCTGTTCAATTCTATGCTTTCCATTTATGCTCGAAAGAACATGTATGACCGGGCTAATGACATGCTGCACATGATTCGTGAAAACGACCTTCAGCCAGATCTCGTAACCTACAATAGCTTGATGGACATGTATGCCAGAAAGGGAGAGTGTTGGAAAGCAGAAGAAATTCTCCTGTCCTTACAAAAATCTGGTGGGAAACCAGACCTTGTCTCTTATAACACTGTCATCAAAGGATTTTGCAGGCAAGGGCACATGCAAGAGGCTATCAGAATTCTCTCTGAGATGACAGCAAGAGGGATTCGACCGTGTATTTTTACCTACAATACTTTTGTCACTGGCTATTCAGGGCGAGGAATGTTCTCAGAAGTAGATGAAGTGATTAGCTATATGACTCAGAACAATTGCAAGCCTAATGAGTTAACCTACAAGATTGTGGTGGATGGTTATTGTAAAGCAAGGAAGTTTGAAGAAGCTATGGACTTTCTGTCAAAGATTAAGGAGATTGATAATTCTTTTGATGATGAATATGTGGAAAGACTCGCTTCTCGCATTAGGGGCAATTGGGAAGCATTGGAGAACTTAAGTAGTCCAAGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

846

Amino Acids

95.54

Weight (kDa)

6.73

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	221 - 272	5.7e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	224 - 270	5.1e-12	PPR repeat family
PPR	PF01535	227 - 256	2.3e-06	PPR repeat
PPR_2	PF13041	258 - 307	2.7e-11	PPR repeat family
PPR_long	PF17177	283 - 418	3.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	283 - 343	3.9e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	298 - 375	2.3e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	329 - 376	3.7e-12	PPR repeat family
PPR	PF01535	332 - 362	1.9e-06	PPR repeat
PPR_3	PF13812	352 - 412	1.2e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	364 - 411	1.8e-10	PPR repeat family
TPR_24	PF23276	380 - 465	4.7e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	387 - 448	1.4e-16	Pentatricopeptide repeat domain
PPR_1	PF12854	395 - 428	1e-09	PPR repeat
PPR_2	PF13041	399 - 443	2.2e-15	PPR repeat family
PPR	PF01535	402 - 432	1.7e-09	PPR repeat
PPR_long	PF17177	404 - 556	4.1e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	434 - 481	3e-12	PPR repeat family
PPR_2	PF13041	471 - 516	4.3e-10	PPR repeat family
PPR_2	PF13041	508 - 553	7.3e-07	PPR repeat family
PPR_3	PF13812	529 - 585	8.4e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	539 - 588	6.7e-14	PPR repeat family
PPR	PF01535	543 - 572	7e-06	PPR repeat
TPR_24	PF23276	633 - 740	4.1e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	634 - 691	9.6e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	644 - 693	2.8e-09	PPR repeat family
PPR_3	PF13812	704 - 760	2.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	711 - 743	9.2e-12	PPR repeat
PPR_2	PF13041	714 - 749	1.1e-10	PPR repeat family
PPR	PF01535	717 - 747	6e-08	PPR repeat
PPR_3	PF13812	737 - 793	2.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	749 - 798	8.4e-13	PPR repeat family
PPR_1	PF12854	781 - 811	5.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18940
fragaria_vesca	FvH4_4g07880
malus_domestica	MD13G1249100.v1.1 MD16G1255600.v1.1
prunus_persica	Prupe.3G037500_v2.0.a1
pyrus_communis	pycom13g21970 pycom16g21670
rosa_chinensis	RchiOBHm_Chr4g0401161
rosa_laevigata	RLG00000009158
rosa_multiflora	Rmu_sc0003257.1_g000006
rosa_roxburghii	Rroxscaffold_5G00346010
rosa_rugosa	Rorug04G0028400
rosa_samantha	Rh4AG105900 Rh4BG100900 Rh4CG114600 Rh4DG098100
rosa_wichuraiana	Rw4G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2157
Acc65I	GGTACC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	8
AccB7I	CCANNNNNTGG	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	25
AciI	CCGC	1 cut(s)	1031
AcoI	YGGCCR	1 cut(s)	1352
AcsI	RAATTY	6 cut(s)	80, 246, 594, 878, 2106, 2211
AcuI	CTGAAG	1 cut(s)	2015
AfaI	GTAC	5 cut(s)	10, 722, 901, 984, 1312
AfiI	CCNNNNNNNGG	4 cut(s)	338, 1282, 1410, 1762
AflII	CTTAAG	1 cut(s)	2521
AflIII	ACRYGT	2 cut(s)	1980, 2067
AhdI	GACNNNNNGTC	1 cut(s)	2425
AjnI	CCWGG	1 cut(s)	985
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AleI	CACNNNNGTG	1 cut(s)	1217
Alw21I	GWGCWC	1 cut(s)	1879
Alw26I	GTCTC	3 cut(s)	1280, 1512, 2155
AoxI	GGCC	3 cut(s)	324, 844, 1352
ApeKI	GCWGC	4 cut(s)	1121, 1574, 1676, 2005
ApoI	RAATTY	6 cut(s)	80, 246, 594, 878, 2106, 2211
Asp700I	GAANNNNTTC	1 cut(s)	2106
Asp718I	GGTACC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	1939
AsuC2I	CCSGG	1 cut(s)	1991
AsuHPI	GGTGA	2 cut(s)	88, 1457
AvaII	GGWCC	1 cut(s)	1939
BaeGI	GKGCMC	2 cut(s)	1405, 2193
BanI	GGYRCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	1879
BbvI	GCAGC	4 cut(s)	1133, 1561, 1688, 1992
BccI	CCATC	6 cut(s)	127, 332, 748, 754, 2056, 2375
BceAI	ACGGC	2 cut(s)	212, 1367
BcgI	CGANNNNNNTGC	4 cut(s)	1136, 1170, 1997, 2031
BciT130I	CCWGG	1 cut(s)	987
BclI	TGATCA	2 cut(s)	1536, 1746
BcnI	CCSGG	1 cut(s)	1991
BcoDI	GTCTC	3 cut(s)	1280, 1512, 2155
BfaI	CTAG	2 cut(s)	1694, 1827
BfoI	RGCGCY	1 cut(s)	277
BfrI	CTTAAG	1 cut(s)	2521
BglII	AGATCT	1 cut(s)	2038
BisI	GCNGC	4 cut(s)	1122, 1575, 1677, 2006
BlsI	GCNGC	4 cut(s)	1123, 1576, 1678, 2007
Bme1390I	CCNGG	2 cut(s)	987, 1991
Bme18I	GGWCC	1 cut(s)	1939
BmeRI	GACNNNNNGTC	1 cut(s)	2425
BmgT120I	GGNCC	1 cut(s)	1939
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	2 cut(s)	987, 1991
BmsI	GCATC	5 cut(s)	635, 1084, 1166, 1561, 1572
BoxI	GACNNNNGTC	1 cut(s)	779
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
BpmI	CTGGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	1991
BsaJI	CCNNGG	2 cut(s)	294, 1146
BsaWI	WCCGGW	2 cut(s)	73, 1410
BsaXI	ACNNNNNCTCC	2 cut(s)	1758, 1788
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 1282, 1410, 1762
Bse1I	ACTGG	5 cut(s)	29, 718, 1294, 1673, 2281
Bse3DI	GCAATG	1 cut(s)	1338
BseBI	CCWGG	1 cut(s)	987
BseDI	CCNNGG	2 cut(s)	294, 1146
BseGI	GGATG	6 cut(s)	626, 676, 859, 943, 1403, 2386
BseLI	CCNNNNNNNGG	4 cut(s)	338, 1282, 1410, 1762
BseMI	GCAATG	1 cut(s)	1338
BseMII	CTCAG	3 cut(s)	2211, 2316, 2348
BseNI	ACTGG	5 cut(s)	29, 718, 1294, 1673, 2281
BseRI	GAGGAG	3 cut(s)	162, 1163, 1373
BseSI	GKGCMC	2 cut(s)	1405, 2193
BseXI	GCAGC	4 cut(s)	1133, 1561, 1688, 1992
BsgI	GTGCAG	2 cut(s)	1560, 1991
Bsh1285I	CGRYCG	1 cut(s)	2246
BshFI	GGCC	3 cut(s)	326, 846, 1354
BshNI	GGYRCC	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	2246
BsiHKAI	GWGCWC	1 cut(s)	1879
BsiSI	CCGG	4 cut(s)	74, 960, 1411, 1990
BslFI	GGGAC	1 cut(s)	1679
BslI	CCNNNNNNNGG	4 cut(s)	338, 1282, 1410, 1762
BsmAI	GTCTC	3 cut(s)	1280, 1512, 2155
BsmFI	GGGAC	1 cut(s)	1679
BsmI	GAATGC	1 cut(s)	1898
BsnI	GGCC	3 cut(s)	326, 846, 1354
Bsp1286I	GDGCHC	4 cut(s)	511, 1405, 1879, 2193
Bsp143I	GATC	5 cut(s)	573, 824, 1536, 1746, 2038
BspACI	CCGC	1 cut(s)	1031
BspANI	GGCC	3 cut(s)	326, 846, 1354
BspCNI	CTCAG	3 cut(s)	2212, 2315, 2347
BspLI	GGNNCC	1 cut(s)	10
BspQI	GCTCTTC	2 cut(s)	857, 1231
BspT107I	GGYRCC	1 cut(s)	8
BspTI	CTTAAG	1 cut(s)	2521
BsrDI	GCAATG	1 cut(s)	1338
BsrI	ACTGG	5 cut(s)	29, 718, 1294, 1673, 2281
BssECI	CCNNGG	2 cut(s)	294, 1146
BssMI	GATC	5 cut(s)	573, 824, 1536, 1746, 2038
Bst2UI	CCWGG	1 cut(s)	987
Bst4CI	ACNGT	8 cut(s)	361, 691, 904, 994, 1219, 1554, 2164, 2247
Bst6I	CTCTTC	7 cut(s)	20, 147, 172, 246, 857, 916, 1231
BstAFI	CTTAAG	1 cut(s)	2521
BstC8I	GCNNGC	4 cut(s)	1434, 1457, 2183, 2348
BstDEI	CTNAG	7 cut(s)	435, 841, 1262, 1880, 2220, 2302, 2334
BstF5I	GGATG	6 cut(s)	626, 676, 859, 943, 1403, 2386
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	5 cut(s)	576, 827, 1539, 1749, 2041
BstMAI	GTCTC	3 cut(s)	1280, 1512, 2155
BstMBI	GATC	5 cut(s)	573, 824, 1536, 1746, 2038
BstMCI	CGRYCG	1 cut(s)	2246
BstMWI	GCNNNNNNNGC	3 cut(s)	1142, 1328, 2496
BstNI	CCWGG	1 cut(s)	987
BstNSI	RCATGY	4 cut(s)	1984, 2005, 2071, 2197
BstPAI	GACNNNNGTC	1 cut(s)	779
BstSCI	CCNGG	2 cut(s)	985, 1989
BstSLI	GKGCMC	2 cut(s)	1405, 2193
BstV1I	GCAGC	4 cut(s)	1133, 1561, 1688, 1992
BstX2I	RGATCY	1 cut(s)	2038
BstYI	RGATCY	1 cut(s)	2038
BsuRI	GGCC	3 cut(s)	326, 846, 1354
BtsCI	GGATG	6 cut(s)	626, 676, 859, 943, 1403, 2386
BtsIMutI	CAGTG	7 cut(s)	258, 687, 711, 909, 1546, 2160, 2274
Cac8I	GCNNGC	4 cut(s)	1434, 1457, 2183, 2348
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	1939
Csp6I	GTAC	5 cut(s)	9, 721, 900, 983, 1311
CviQI	GTAC	5 cut(s)	9, 721, 900, 983, 1311
DdeI	CTNAG	7 cut(s)	435, 841, 1262, 1880, 2220, 2302, 2334
DpnI	GATC	5 cut(s)	575, 826, 1538, 1748, 2040
DpnII	GATC	5 cut(s)	573, 824, 1536, 1746, 2038
DriI	GACNNNNNGTC	1 cut(s)	2425
EaeI	YGGCCR	1 cut(s)	1352
Eam1104I	CTCTTC	7 cut(s)	20, 147, 172, 246, 857, 916, 1231
Eam1105I	GACNNNNNGTC	1 cut(s)	2425
EarI	CTCTTC	7 cut(s)	20, 147, 172, 246, 857, 916, 1231
Eco147I	AGGCCT	1 cut(s)	846
Eco24I	GRGCYC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	909
Eco47I	GGWCC	1 cut(s)	1939
Eco57I	CTGAAG	1 cut(s)	2015
EcoRI	GAATTC	1 cut(s)	2211
EcoRII	CCWGG	1 cut(s)	985
EcoRV	GATATC	1 cut(s)	909
EcoT22I	ATGCAT	3 cut(s)	703, 1231, 1622
EcoT38I	GRGCYC	1 cut(s)	511
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 2467, 2499
FaqI	GGGAC	1 cut(s)	1679
FauI	CCCGC	1 cut(s)	1024
FauNDI	CATATG	2 cut(s)	1231, 1546
FbaI	TGATCA	2 cut(s)	1536, 1746
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	1122, 1575, 1677, 2006
FokI	GGATG	6 cut(s)	613, 683, 866, 950, 1410, 2393
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	4 cut(s)	1122, 1575, 1677, 2006
FspBI	CTAG	2 cut(s)	1694, 1827
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	4 cut(s)	1122, 1575, 1677, 2006
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	277
HaeIII	GGCC	3 cut(s)	326, 846, 1354
HapII	CCGG	4 cut(s)	74, 960, 1411, 1990
HhaI	GCGC	1 cut(s)	276
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HincII	GTYRAC	1 cut(s)	2361
HindII	GTYRAC	1 cut(s)	2361
HpaI	GTTAAC	1 cut(s)	2361
HpaII	CCGG	4 cut(s)	74, 960, 1411, 1990
HphI	GGTGA	2 cut(s)	88, 1457
Hpy166II	GTNNAC	3 cut(s)	26, 307, 2361
Hpy188I	TCNGA	7 cut(s)	267, 550, 1564, 2210, 2221, 2305, 2337
Hpy188III	TCNNGA	4 cut(s)	355, 1484, 1694, 2018
Hpy8I	GTNNAC	3 cut(s)	26, 307, 2361
HpyAV	CCTTC	9 cut(s)	44, 116, 164, 246, 469, 811, 1276, 1534, 2039
HpyCH4III	ACNGT	8 cut(s)	361, 691, 904, 994, 1219, 1554, 2164, 2247
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1142, 1328, 2496
HpyF3I	CTNAG	7 cut(s)	435, 841, 1262, 1880, 2220, 2302, 2334
HspAI	GCGC	1 cut(s)	274
KpnI	GGTACC	1 cut(s)	12
Ksp22I	TGATCA	2 cut(s)	1536, 1746
KspAI	GTTAAC	1 cut(s)	2361
Kzo9I	GATC	5 cut(s)	573, 824, 1536, 1746, 2038
LguI	GCTCTTC	2 cut(s)	857, 1231
Lsp1109I	GCAGC	4 cut(s)	1133, 1561, 1688, 1992
LweI	GCATC	5 cut(s)	635, 1084, 1166, 1561, 1572
MaeI	CTAG	2 cut(s)	1694, 1827
MalI	GATC	5 cut(s)	575, 826, 1538, 1748, 2040
MboI	GATC	5 cut(s)	573, 824, 1536, 1746, 2038
MfeI	CAATTG	6 cut(s)	278, 496, 732, 1907, 2341, 2500
MflI	RGATCY	1 cut(s)	2038
MhlI	GDGCHC	4 cut(s)	511, 1405, 1879, 2193
MlyI	GAGTC	6 cut(s)	131, 256, 404, 617, 2326, 2472
MmeI	TCCRAC	2 cut(s)	915, 2072
Mph1103I	ATGCAT	3 cut(s)	703, 1231, 1622
MroXI	GAANNNNTTC	1 cut(s)	2106
MseI	TTAA	8 cut(s)	195, 203, 1166, 1716, 1917, 2360, 2436, 2522
MslI	CAYNNNNRTG	2 cut(s)	1217, 1464
MspA1I	CMGCKG	1 cut(s)	1679
MspCI	CTTAAG	1 cut(s)	2521
MspI	CCGG	4 cut(s)	74, 960, 1411, 1990
MspR9I	CCNGG	2 cut(s)	987, 1991
MunI	CAATTG	6 cut(s)	278, 496, 732, 1907, 2341, 2500
Mva1269I	GAATGC	1 cut(s)	1898
MvaI	CCWGG	1 cut(s)	987
MwoI	GCNNNNNNNGC	3 cut(s)	1142, 1328, 2496
NciI	CCSGG	1 cut(s)	1991
NdeI	CATATG	2 cut(s)	1231, 1546
NdeII	GATC	5 cut(s)	573, 824, 1536, 1746, 2038
NlaIV	GGNNCC	1 cut(s)	10
NmeAIII	GCCGAG	2 cut(s)	1171, 1636
NmuCI	GTSAC	5 cut(s)	609, 781, 969, 1347, 2272
NsiI	ATGCAT	3 cut(s)	703, 1231, 1622
NspI	RCATGY	4 cut(s)	1984, 2005, 2071, 2197
OliI	CACNNNNGTG	1 cut(s)	1217
PceI	AGGCCT	1 cut(s)	846
PciI	ACATGT	2 cut(s)	1980, 2067
PciSI	GCTCTTC	2 cut(s)	857, 1231
PctI	GAATGC	1 cut(s)	1898
PdmI	GAANNNNTTC	1 cut(s)	2106
PfeI	GAWTC	8 cut(s)	257, 428, 1140, 1471, 1682, 1834, 2014, 2239
PflFI	GACNNNGTC	1 cut(s)	2147
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	4 cut(s)	1123, 1576, 1678, 2007
PleI	GAGTC	6 cut(s)	131, 256, 403, 616, 2326, 2472
PpsI	GAGTC	6 cut(s)	131, 256, 403, 616, 2326, 2472
PscI	ACATGT	2 cut(s)	1980, 2067
PshAI	GACNNNNGTC	1 cut(s)	779
PsiI	TTATAA	1 cut(s)	2157
Psp6I	CCWGG	1 cut(s)	985
PspGI	CCWGG	1 cut(s)	985
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	1939
PsuI	RGATCY	1 cut(s)	2038
PsyI	GACNNNGTC	1 cut(s)	2147
PvuII	CAGCTG	1 cut(s)	1679
RsaI	GTAC	5 cut(s)	10, 722, 901, 984, 1312
RsaNI	GTAC	5 cut(s)	9, 721, 900, 983, 1311
RseI	CAYNNNNRTG	2 cut(s)	1217, 1464
SapI	GCTCTTC	2 cut(s)	857, 1231
SaqAI	TTAA	8 cut(s)	195, 203, 1166, 1716, 1917, 2360, 2436, 2522
SatI	GCNGC	4 cut(s)	1122, 1575, 1677, 2006
Sau3AI	GATC	5 cut(s)	573, 824, 1536, 1746, 2038
Sau96I	GGNCC	1 cut(s)	1939
SchI	GAGTC	6 cut(s)	131, 256, 404, 617, 2326, 2472
ScrFI	CCNGG	2 cut(s)	987, 1991
SduI	GDGCHC	4 cut(s)	511, 1405, 1879, 2193
SfaNI	GCATC	5 cut(s)	635, 1084, 1166, 1561, 1572
SinI	GGWCC	1 cut(s)	1939
SmiMI	CAYNNNNRTG	2 cut(s)	1217, 1464
SmlI	CTYRAG	1 cut(s)	2521
SmoI	CTYRAG	1 cut(s)	2521
SseBI	AGGCCT	1 cut(s)	846
SsiI	CCGC	1 cut(s)	1031
SspMI	CTAG	2 cut(s)	1694, 1827
StuI	AGGCCT	1 cut(s)	846
StyD4I	CCNGG	2 cut(s)	985, 1989
TaaI	ACNGT	8 cut(s)	361, 691, 904, 994, 1219, 1554, 2164, 2247
TaqI	TCGA	8 cut(s)	260, 348, 676, 823, 1391, 1483, 1972, 2242
TatI	WGTACW	1 cut(s)	899
TfiI	GAWTC	8 cut(s)	257, 428, 1140, 1471, 1682, 1834, 2014, 2239
Tru1I	TTAA	8 cut(s)	195, 203, 1166, 1716, 1917, 2360, 2436, 2522
Tru9I	TTAA	8 cut(s)	195, 203, 1166, 1716, 1917, 2360, 2436, 2522
TscAI	CASTG	7 cut(s)	258, 694, 718, 909, 1546, 2167, 2281
TseFI	GTSAC	5 cut(s)	609, 781, 969, 1347, 2272
TseI	GCWGC	4 cut(s)	1121, 1574, 1676, 2005
Tsp45I	GTSAC	5 cut(s)	609, 781, 969, 1347, 2272
TspRI	CASTG	7 cut(s)	258, 694, 718, 909, 1546, 2167, 2281
Tth111I	GACNNNGTC	1 cut(s)	2147
Van91I	CCANNNNNTGG	1 cut(s)	338
Vha464I	CTTAAG	1 cut(s)	2521
VpaK11BI	GGWCC	1 cut(s)	1939
XapI	RAATTY	6 cut(s)	80, 246, 594, 878, 2106, 2211
XbaI	TCTAGA	1 cut(s)	1693
XceI	RCATGY	4 cut(s)	1984, 2005, 2071, 2197
XmiI	GTMKAC	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	2106
XspI	CTAG	2 cut(s)	1694, 1827
Zsp2I	ATGCAT	3 cut(s)	703, 1231, 1622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.